Revealing the uncharacterised diversity of amphibian and reptile viruses | ISME Communications – Nature.com

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Benton MJ, Donoghue PCJ. Paleontological evidence to date the tree of life. Mol Biol Evol. 2006;24:2653.

PubMed Google Scholar

Roll U, Feldman A, Novosolov M, Allison A, Bauer AM, Bernard R, et al. The global distribution of tetrapods reveals a need for targeted reptile conservation. Nat Ecol Evol. 2017;1:167782.

PubMed Google Scholar

IUCN, The IUCN Red List of Threatened Species. Version 2021-3. 2021.

Medicine, N.L.o., NCBI Genome. 2022, National Center for Biotechnology Information.

Hotaling S, Kelley JL, Frandsen PB. Toward a genome sequence for every animal: Where are we now? Proc Natl Acad Sci. 2021;118:e2109019118.

PubMed PubMed Central Google Scholar

Shi M, Lin XD, Chen X, Tian JH, Chen LJ, Li K, et al. The evolutionary history of vertebrate RNA viruses. Nature. 2018;556:197202.

PubMed Google Scholar

Parry R, Wille M, Turnbull OMH, Geoghegan JL, Holmes EC. Divergent influenzalike viruses of amphibians and fish support an ancient evolutionary association. Viruses. 2020;12:1042.

PubMed Central Google Scholar

Peck KM, Lauring AS, Christopher S, Complexities of viral mutation rates. J Virol. 92: e01031-17.

Latney LV, Klaphake E. Selected emerging infectious diseases of amphibians. Vet Clin N AmExotic Animal Pract. 2020;23:397412.

Google Scholar

Zhang J, Finlaison DS, Frost MJ, Gestier S, Gu X, Hall J, et al. Identification of a novel nidovirus as a potential cause of large scale mortalities in the endangered Bellinger River snapping turtle (Myuchelys georgesi). PLOS ONE. 2018;13:e0205209.

PubMed PubMed Central Google Scholar

Parrish K, Kirkland PD, Skerratt LF, Ariel E. Nidoviruses in reptiles: a review. Front Vet Sci. 2021;8:733404.

PubMed PubMed Central Google Scholar

Chang WS, Li CX, Hall J, Eden JS, Hyndman TH, Holmes EC, et al. Metatranscriptomic discovery of a divergent circovirus and a chaphamaparvovirus in captive reptiles with proliferative respiratory syndrome. Viruses. 2020;12:1073.

PubMed Central Google Scholar

Mendoza-Roldan JA, Mendoza-Roldan MA, Otranto D. Reptile vector-borne diseases of zoonotic concern. Int J Parasitol: Parasites Wildl. 2021;15:13242.

Google Scholar

Essbauer S, Ahne W. Viruses of lower vertebrates. J Vet Med Ser B. 2001;48:40375.

Google Scholar

Mercer LK, Harding EF, Yan GJH, White PA. Novel viruses discovered in the transcriptomes of agnathan fish. J Fish Dis. 2022;45:9318.

PubMed PubMed Central Google Scholar

Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat biotechnol. 2011;29:64452.

PubMed PubMed Central Google Scholar

Harding EF, Russo AG, Yan GJH, Waters PD, White PA. Ancient viral integrations in marsupials: a potential antiviral defence. Virus Evol. 2021;7:veab076.

PubMed PubMed Central Google Scholar

Buchfink B, Xie C, Huson DH. Fast and sensitive protein alignment using DIAMOND. Nat Methods. 2015;12:5960.

PubMed Google Scholar

Katoh K, Standley DM. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 2013;30:77280.

PubMed PubMed Central Google Scholar

Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 2014;30:13123.

PubMed PubMed Central Google Scholar

Kelly AG, Netzler NE, White PA. Ancient recombination events and the origins of hepatitis E virus. BMC Evol Biol. 2016;16:210.

PubMed PubMed Central Google Scholar

Rector A, Van, Ranst M. Animal papillomaviruses. Virology. 2013;445:21323.

PubMed Google Scholar

Blahak S, Jenckel M, Hper D, Beer M, Hoffmann B, Schlottau K. Investigations into the presence of nidoviruses in pythons. Virol J. 2020;17:6.

PubMed PubMed Central Google Scholar

Marschang RE. Viruses infecting reptiles. Viruses. 2011;3:2087126.

PubMed PubMed Central Google Scholar

Horie M, Akashi H, Kawata M, Tomonaga K. Identification of a reptile lyssavirus in Anolis allogus provided novel insights into lyssavirus evolution. Virus Genes. 2021;57:4049.

PubMed Google Scholar

Stenglein MD, Sanders C, Kistler AL, Ruby JG, Franco JY, Reavill DR, et al. Identification, characterization, and in vitro culture of highly divergent arenaviruses from boa constrictors and annulated tree boas: candidate etiological agents for snake inclusion body disease. mBio. 2012;3:e0018012.

PubMed PubMed Central Google Scholar

Garver KA, Leskisenoja K, Macrae R, Hawley LM, Subramaniam K, Waltzek TB, et al. An alloherpesvirus infection of european perch perca fluviatilis in Finland. Dis Aquat Org. 2018;128:17585.

Google Scholar

Hellebuyck T, Couck L, Ducatelle R, Broeck WV, Marschang RE. Cheilitis associated with a novel herpesvirus in two panther chameleons (Furcifer pardalis). J Comp Pathol. 2021;182:5866.

PubMed Google Scholar

Altan E, Kubiski SV, Burchell J, Bicknese E, Deng X, Delwart E. The first reptilian circovirus identified infects gut and liver tissues of black-headed pythons. Vet Res. 2019;50:35.

PubMed PubMed Central Google Scholar

Russo AG, Harding EF, Yan GJH, Selechnik D, Ducatez S, DeVore JL, et al. Discovery of novel viruses associated with the invasive cane toad (Rhinella marina) in its native and introduced ranges. Front Microbiol. 2021;12:733631.

PubMed PubMed Central Google Scholar

Chen X-X, Wu W-C, Shi M. Discovery and characterization of actively replicating DNA and retro-transcribing viruses in lower vertebrate hosts based on RNA sequencing. Viruses. 2021;13:1042.

PubMed PubMed Central Google Scholar

Russo AG, Eden JS, Tuipulotu DE, Shi M, Selechnik D, Shine R, et al. Viral discovery in the invasive Australian cane toad (Rhinella marina) using metatranscriptomic and genomic approaches. J Virol. 2018;92:e0076818.

PubMed PubMed Central Google Scholar

Lpez-Bueno A, Mavian C, Labella AM, Castro D, Borrego JJ, Alcami A, et al. Concurrence of Iridovirus, Polyomavirus, and a unique member of a new group of fish Papillomaviruses in Lymphocystis disease-affected gilthead sea bream. Journal of virology. 2016;90:876879.

PubMed PubMed Central Google Scholar

Bentley K, Evans DJ. Mechanisms and consequences of positive-strand RNA virus recombination. J Gen Virol. 2018;99:134556.

PubMed Google Scholar

Diemer GS, Stedman KM. A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses. Biol Direct. 2012;7:13.

PubMed PubMed Central Google Scholar

Welch, NL, MJ Tisza, GJ Starrett, AK Belford, DV Pastrana, Y-YS Pang, et al. Identification of Adomavirus Virion proteins. bioRxiv. 2020:341131. https://doi.org/10.1101/341131

Dill JA, Camus AC, Leary JH, Ng TFF, Zheng Z-M, Meng X-J. Microscopic and Molecular Evidence of the First Elasmobranch Adomavirus, the Cause of Skin Disease in a Giant Guitarfish, Rhynchobatus djiddensis. mBio. 2018;9:e0018518.

PubMed PubMed Central Google Scholar

Yang J-X, Chen X, Li Y-Y, Song T-Y, Ge J-Q. Isolation of a novel adomavirus from cultured American eels, Anguilla rostrata, with haemorrhagic gill necrosis disease. J Fish Dis. 2021;44:18118.

PubMed Google Scholar

King AMQ, Adams MJ, Carstens EB & Lefkowitz EJ, Order - Nidovirales, in virus taxonomy: classification and nomenclature of viruses. 2012, Elsevier/Academic Press: San Diego.

Lyu S, Yuan X, Zhang H, Shi W, Hang X, Liu L, et al. Complete genome sequence and analysis of a new lethal arterivirus, Trionyx sinensis hemorrhagic syndrome virus (TSHSV), amplified from an infected Chinese softshell turtle. Arch Virol. 2019;164:25937.

PubMed PubMed Central Google Scholar

Sinzelle L, Carradec Q, Paillard E, Bronchain OJ, Pollet N. Characterization of a Xenopus tropicalis endogenous retrovirus with developmental and stress-dependent expression. J Virol. 2011;85:216779.

PubMed Google Scholar

Wei X, Chen Y, Duan G, Holmes EC, Cui J. A reptilian endogenous foamy virus sheds light on the early evolution of retroviruses. Virus Evol. 2019;5:vez001.

PubMed PubMed Central Google Scholar

Debat HJ, Ng TFF. Complete genome sequence of a divergent strain of Tibetan frog hepatitis B virus associated with a concave-eared torrent frog (Odorrana tormota). Arch Virol. 2019;164:172732.

PubMed Google Scholar

Reuter G, Boros , Tth Z, Gia Phan T, Delwart E, Pankovics P. A highly divergent picornavirus in an amphibian, the smooth newt (Lissotriton vulgaris). J Gen Virol. 2015;96:260713.

PubMed PubMed Central Google Scholar

ICTV. Subfamily: Secondpapillomavirinae. 2021 [cited 2022 15/06/2022]; Virus Taxonomy: 2021 Release:[Available from: https://talk.ictvonline.org/ictv-reports/ictv_online_report/dsdna-viruses/w/papillomaviridae/894/subfamilysecondpapillomavirinae.

Willemsen A, Bravo IG. Origin and evolution of papillomavirus (onco)genes and genomes. Philos Trans R Soc B: Biol Sci. 2019;374:20180303.

Google Scholar

Agius JE, Phalen DN, Rose K, Eden J-S. New insights into Sauropsid Papillomaviridae evolution and epizootiology: discovery of two novel papillomaviruses in native and invasive Island geckos. Virus Evol. 2019;5:vez051.

PubMed PubMed Central Google Scholar

Bienentreu J-F, Lesbarrres D. Amphibian disease ecology: are we just scratching the surface? Herpetologica. 2020;76:15366.

Google Scholar

Mashkour N, Jones K, Wirth W, Burgess G, Ariel E. The concurrent detection of Chelonid Alphaherpesvirus 5 and Chelonia mydas Papillomavirus 1 in tumoured and non-tumoured green turtles. Animals. 2021;11:697.

PubMed PubMed Central Google Scholar

Hoon-Hanks LL, Layton ML, Ossiboff RJ, Parker JSL, Dubovi EJ, Stenglein MD. Respiratory disease in ball pythons (Python regius) experimentally infected with ball python nidovirus. Virology. 2018;517:7787.

PubMed Google Scholar

Dervas E, Hepojoki J, Smura T, Prhauser B, Windbichler K, Blmich S, et al. Serpentoviruses: More than respiratory pathogens. J Virol. 2020;94:e0064920.

PubMed PubMed Central Google Scholar

ODea MA, Jackson B, Jackson C, Xavier P, Warren K. Discovery and Partial Genomic Characterisation of a Novel Nidovirus Associated with Respiratory Disease in Wild Shingleback Lizards (Tiliqua rugosa). PloS One. 2016;11:e0165209.

PubMed PubMed Central Google Scholar

Dervas E, Hepojoki J, Laimbacher A, Romero-Palomo F, Jelinek C, Keller S, et al. Nidovirus-associated proliferative pneumonia in the green tree python (Morelia viridis). J Virol. 2017;91:e0071817.

PubMed PubMed Central Google Scholar

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