Loftus, R. T., MacHugh, D. E., Bradley, D. G., Sharp, P. M. & Cunningham, P. Evidence for two independent domestications of cattle. Proc. Natl Acad. Sci. USA 91, 27572761 (1994).
Article ADS CAS PubMed PubMed Central Google Scholar
Verdugo Marta, P. et al. Ancient cattle genomics, origins, and rapid turnover in the Fertile Crescent. Science 365, 173176 (2019).
Article ADS PubMed Google Scholar
Utsunomiya, Y. T. et al. Genomic clues of the evolutionary history of Bos indicus cattle. Anim. Genet. 50, 557568 (2019).
Article CAS PubMed Google Scholar
Thornton, P., Nelson, G., Mayberry, D. & Herrero, M. Impacts of heat stress on global cattle production during the 21st century: a modelling study. Lancet Planet. Health 6, e192e201 (2022).
Article PubMed Google Scholar
Kim, K. et al. The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism. Nat. Genet. 52, 10991110 (2020).
Article PubMed Google Scholar
Chen, S. et al. Zebu cattle are an exclusive legacy of the South Asia Neolithic. Mol. Biol. Evol. 27, 16 (2010).
Article PubMed Google Scholar
Papachristou, D. et al. Genomic diversity and population structure of the indigenous Greek and Cypriot cattle populations. Genet. Sel. Evol. 52, 43 (2020).
Article CAS PubMed PubMed Central Google Scholar
Felius, M. et al. On the history of cattle genetic resources. Diversity 6, 705750 (2014).
Article Google Scholar
Chen, N. et al. Whole-genome resequencing reveals world-wide ancestry and adaptive introgression events of domesticated cattle in East Asia. Nat. Commun. 9, 2337 (2018).
Article ADS PubMed PubMed Central Google Scholar
Wu, D.-D. et al. Pervasive introgression facilitated domestication and adaptation in the Bos species complex. Nat. Ecol. Evol. 2, 11391145 (2018).
Article PubMed Google Scholar
Medugorac, I. et al. Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks. Nat. Genet. 49, 470475 (2017).
Article CAS PubMed Google Scholar
Sinding, M.-H. S. et al. Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos. iScience 24, 103226 (2021).
Article ADS CAS PubMed PubMed Central Google Scholar
Lenstra, J. A. et al. Meta-analysis of mitochondrial DNA reveals several population bottlenecks during worldwide migrations of cattle. Diversity 6, 178187 (2014).
Article Google Scholar
Li, Y. et al. Whole-genome sequencing reveals selection signals among Chinese, Pakistani, and Nepalese goats. J. Genet. Genomics 50, 362365 (2023).
Article PubMed Google Scholar
Dixit, Y., Hodell, D. A. & Petrie, C. A. Abrupt weakening of the summer monsoon in northwest India ~4100 yr ago. Geology 42, 339342 (2014).
Article ADS CAS Google Scholar
Ali, N. S., Sartori-Valinotti, J. C. & Bruce, A. J. Periodic fever, aphthous stomatitis, pharyngitis, and adenitis (PFAPA) syndrome. Clin. Dermatol. 34, 482486 (2016).
Article PubMed Google Scholar
Duchesne, A. et al. Progressive ataxia of Charolais cattle highlights a role of KIF1C in sustainable myelination. PLoS Genet. 14, e1007550 (2018).
Article PubMed PubMed Central Google Scholar
Miyajima, D. et al. Profilin1 regulates sternum development and endochondral bone formation. J. Biol. Chem. 287, 3354533553 (2012).
Article CAS PubMed PubMed Central Google Scholar
Song, K. et al. The transcriptional coactivator CAMTA2 stimulates cardiac growth by opposing class II histone deacetylases. Cell 125, 453466 (2006).
Article CAS PubMed Google Scholar
Fougerousse, F. et al. The muscle-specific enolase is an early marker of human myogenesis. J. Muscle Res. Cell Motil. 22, 535544 (2001).
Article CAS PubMed Google Scholar
Kazantseva, A. et al. Human hair growth deficiency is linked to a genetic defect in the phospholipase gene LIPH. Science 314, 982985 (2006).
Article ADS CAS PubMed Google Scholar
Jirimutu et al. Genome sequences of wild and domestic bactrian camels. Nat. Commun. 3, 1202 (2012).
Article ADS CAS PubMed Google Scholar
Tian, S. et al. Genomic analyses reveal genetic adaptations to tropical climates in chickens. iScience 23, 101644 (2020).
Article ADS CAS PubMed PubMed Central Google Scholar
Yang, J. et al. Whole-genome sequencing of native sheep provides insights into rapid adaptations to extreme environments. Mol. Biol. Evol. 33, 25762592 (2016).
Article CAS PubMed PubMed Central Google Scholar
Deng, C., Chen, H., Yang, N., Feng, Y. & Hsueh, A. J. W. Apela regulates fluid homeostasis by binding to the APJ receptor to activate Gi. Signal. J. Biol. Chem. 290, 1826118268 (2015).
Article CAS PubMed Google Scholar
Jin, H., Fishman, Z. H., Ye, M., Wang, L. & Zuker, C. S. Top-down control of sweet and bitter taste in the mammalian brain. Cell 184, 257271.e16 (2021).
Article CAS PubMed Google Scholar
Zhang, K., Lenstra, J. A., Zhang, S., Liu, W. & Liu, J. Evolution and domestication of the Bovini species. Anim. Genet. 51, 637657 (2020).
Article CAS PubMed Google Scholar
Robinson, T. P. et al. Global Livestock Production Systems (Food and Agriculture Organization of the United Nations (FAO) and International Livestock Research Institute (ILRI), 2011).
Li, X., Shen, J. & Ran, Z. Crosstalk between the gut and the liver via susceptibility loci: novel advances in inflammatory bowel disease and autoimmune liver disease. Clin. Immunol. 175, 115123 (2017).
Article CAS PubMed Google Scholar
Dai, W. et al. Whole-exome sequencing identifies MST1R as a genetic susceptibility gene in nasopharyngeal carcinoma. Proc. Natl Acad. Sci. USA 113, 33173322 (2016).
Article ADS CAS PubMed PubMed Central Google Scholar
Wang, F. et al. Genetic variation in Mon1a affects protein trafficking and modifies macrophage iron loading in mice. Nat. Genet. 39, 10251032 (2007).
Article CAS PubMed Google Scholar
Tomizawa, Y. et al. Inhibition of lung cancer cell growth and induction of apoptosis after reexpression of 3p21.3 candidate tumor suppressor gene SEMA3B. Proc. Natl Acad. Sci. USA 98, 1395413959 (2001).
Article ADS CAS PubMed PubMed Central Google Scholar
Raymond, J. R. Jr., Appleton, K. M., Pierce, J. Y. & Peterson, Y. K. Suppression of GNAI2 message in ovarian cancer. J. Ovarian Res. 7, 66 (2014).
Article PubMed PubMed Central Google Scholar
Potiron, V. A. et al. Semaphorin SEMA3F affects multiple signaling pathways in lung cancer cells. Cancer Res. 67, 87088715 (2007).
Article CAS PubMed Google Scholar
Bechara, E. G., Sebestyn, E., Bernardis, I., Eyras, E. & Valcrcel, J. RBM5, 6, and 10 differentially regulate NUMB alternative splicing to control cancer cell proliferation. Mol. Cell 52, 720733 (2013).
Article CAS PubMed Google Scholar
Grabek, K. R. et al. Genetic variation drives seasonal onset of hibernation in the 13-lined ground squirrel. Commun. Biol. 2, 478 (2019).
Article PubMed PubMed Central Google Scholar
Chen, N. et al. Ancient genomes reveal tropical bovid species in the Tibetan Plateau contributed to the prevalence of hunting game until the late Neolithic. Proc. Natl Acad. Sci. USA 117, 2815028159 (2020).
Article ADS CAS PubMed PubMed Central Google Scholar
Pickrell, J. K. & Pritchard, J. K. Inference of population splits and mixtures from genome-wide allele frequency data. PLoS Genet. 8, e1002967 (2012).
Article CAS PubMed PubMed Central Google Scholar
Maples, B. K., Gravel, S., Kenny, E. E. & Bustamante, C. D. RFMix: a discriminative modeling approach for rapid and robust local-ancestry inference. Am. J. Hum. Genet. 93, 278288 (2013).
Article CAS PubMed PubMed Central Google Scholar
Malinsky, M., Matschiner, M. & Svardal, H. Dsuite-Fast D-statistics and related admixture evidence from VCF files. Mol. Ecol. Resour. 21, 584595 (2021).
Article PubMed Google Scholar
Racimo, F., Marnetto, D. & Huerta-Snchez, E. Signatures of archaic adaptive introgression in present-day human populations. Mol. Biol. Evol. 34, 296317 (2016).
PubMed Central Google Scholar
Gong, Y. et al. ILDR1 is important for paracellular water transport and urine concentration mechanism. Proc. Natl Acad. Sci. USA 114, 52715276 (2017).
Article ADS CAS PubMed PubMed Central Google Scholar
Ling, S. et al. Structural mechanism of cooperative activation of the human calcium-sensing receptor by Ca2+ ions and L-tryptophan. Cell Res. 31, 383394 (2021).
Article CAS PubMed PubMed Central Google Scholar
Vasilopoulos, Y. et al. Association analysis of the skin barrier gene cystatin A at the PSORS5 locus in psoriatic patients: evidence for interaction between PSORS1 and PSORS5. Eur. J. Hum. Genet. 16, 10021009 (2008).
Article CAS PubMed Google Scholar
Kariuki, S. N. & Williams, T. N. Human genetics and malaria resistance. Hum. Genet. 139, 801811 (2020).
Article PubMed PubMed Central Google Scholar
Gaughan, J. B., Sejian, V., Mader, T. L. & Dunshea, F. R. Adaptation strategies: ruminants. Anim. Front. 9, 4753 (2019).
Article PubMed Google Scholar
Brash, D. E. & Haseltine, W. A. UV-induced mutation hotspots occur at DNA damage hotspots. Nature 298, 189192 (1982).
Article ADS CAS PubMed Google Scholar
Vandewauw, I. et al. A TRP channel trio mediates acute noxious heat sensing. Nature 555, 662666 (2018).
Article ADS CAS PubMed Google Scholar
Lindley, E. P. Contagious bovine pleuropneumonia. In Diseases of Cattle in the Tropics: Economic and Zoonotic Relevance (eds Ristic M. & McIntyre W. I. M.) (Springer, 1981).
Van Alfen, N. K. Encyclopedia of Agriculture and Food Systems (Elsevier, 2014).
Brown, C. G. D. Dynamics and impact of tick-borne diseases of cattle. Trop. Anim. Health Prod. 29, 1S3S (1997).
Article CAS PubMed Google Scholar
Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 21142120 (2014).
Read the original:
Global genetic diversity, introgression, and evolutionary adaptation of indicine cattle revealed by whole genome ... - Nature.com
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