Ancient DNA reveals phenological diversity of Coast Salish herring harvests over multiple centuries | Scientific Reports – Nature.com

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Luck, G. W., Daily, G. C. & Ehrlich, P. R. Population diversity and ecosystem services. Trends Ecol. Evol. 18, 331336. https://doi.org/10.1016/S0169-5347(03)00100-9 (2003).

Article Google Scholar

Schindler, D. E. et al. Population diversity and the portfolio effect in an exploited species. Nature 465, 609612. https://doi.org/10.1038/nature09060 (2010).

ADS CAS Article PubMed Google Scholar

Moore, J. W., Yeakel, J. D., Peard, D., Lough, J. & Beere, M. Life-history diversity and its importance to population stability and persistence of a migratory fish: Steelhead in two large North American watersheds. J. Anim. Ecol. 83, 10351046. https://doi.org/10.1111/1365-2656.12212 (2014).

Article PubMed Google Scholar

Barrett, R. D. H. et al. Linking a mutation to survival in wild mice. Science 363, 499. https://doi.org/10.1126/science.aav3824 (2019).

ADS CAS Article PubMed Google Scholar

Jones, F. C. et al. The genomic basis of adaptive evolution in threespine sticklebacks. Nature 484, 55. https://doi.org/10.1038/nature10944 (2012).

CAS Article PubMed PubMed Central Google Scholar

Savage, A. E. & Zamudio, K. R. MHC genotypes associate with resistance to a frog-killing fungus. Proc. Natl. Acad. Sci. 108, 16705. https://doi.org/10.1073/pnas.1106893108 (2011).

ADS Article PubMed PubMed Central Google Scholar

Hofinger, B. J. et al. An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Mol. Ecol. 20, 36533668. https://doi.org/10.1111/j.1365-294X.2011.05201.x (2011).

CAS Article PubMed Google Scholar

Ceballos, G., Ehrlich, P. R. & Dirzo, R. Biological annihilation via the ongoing sixth mass extinction signaled by vertebrate population losses and declines. Proc. Natl. Acad. Sci. 114, E6089. https://doi.org/10.1073/pnas.1704949114 (2017).

CAS Article PubMed PubMed Central Google Scholar

Hughes, J. B., Daily, G. C. & Ehrlich, P. R. Population diversity: its extent and extinction. Science 278, 689. https://doi.org/10.1126/science.278.5338.689 (1997).

ADS CAS Article PubMed Google Scholar

Fernndez-Llamazares, . et al. Scientists warning to humanity on threats to indigenous and local knowledge systems. J. Ethnobiol. 41(144169), 126 (2021).

Google Scholar

Womble, J. N., Willson, M. F., Sigler, M. F., Kelly, B. P. & VanBlaricom, G. R. Distribution of Steller sea lions (Eumetopias jubatus) in relation to spring-spawning fish in SE Alaska. Mar. Ecol. Prog. Ser. 294, 271282 (2005).

ADS Article Google Scholar

Thomas, G. L. & Thorne, R. E. Night-time predation by Steller sea lions. Nature 411, 10131013. https://doi.org/10.1038/35082745 (2001).

ADS CAS Article PubMed Google Scholar

Chamberlin, J. W., Beckman, B. R., Greene, C. M., Rice, C. A. & Hall, J. E. How relative size and abundance structures the relationship between size and individual growth in an ontogenetically piscivorous fish. Ecol. Evol. 7, 69816995. https://doi.org/10.1002/ece3.3218 (2017).

Article PubMed PubMed Central Google Scholar

Hatch, S. A. Kittiwake diets and chick production signal a 2008 regime shift in the Northeast Pacific. Mar. Ecol. Prog. Ser. 477, 271284 (2013).

ADS Article Google Scholar

Schrimpf, M. B., Parrish, J. K. & Pearson, S. F. Trade-offs in prey quality and quantity revealed through the behavioral compensation of breeding seabirds. Mar. Ecol. Prog. Ser. https://doi.org/10.3354/meps09750 (2012).

Article Google Scholar

Willson, M. F. & Womble, J. N. Vertebrate exploitation of pulsed marine prey: A review and the example of spawning herring. Rev. Fish Biol. Fisheries 16, 183200. https://doi.org/10.1007/s11160-006-9009-7 (2006).

Article Google Scholar

Sandell, T., Lindquist, A., Dionne, P. & Lowry, D. 2016 Washington State herring stock status report (Washington Department of Fish and Wildlife, 2019).

Petrou, E. L. et al. Functional genetic diversity in an exploited marine species and its relevance to fisheries management. Proc. R. Soc. B Biol. Sci. 288, 20202398. https://doi.org/10.1098/rspb.2020.2398 (2021).

CAS Article Google Scholar

Chamberlin, J. et al. Phenological diversity of a prey species supports life-stage specific foraging opportunity for a mobile consumer. ICES J. Mar. Sci. 78, 30893100. https://doi.org/10.1093/icesjms/fsab176 (2021).

Article Google Scholar

Lok, E. K. et al. Spatiotemporal associations between Pacific herring spawn and surf scoter spring migration: Evaluating a silver wave hypothesis. Mar. Ecol. Prog. Ser. 457, 139150 (2012).

ADS Article Google Scholar

Armstrong, J. B., Takimoto, G., Schindler, D. E., Hayes, M. M. & Kauffman, M. J. Resource waves: Phenological diversity enhances foraging opportunities for mobile consumers. Ecology 97, 10991112. https://doi.org/10.1890/15-0554.1 (2016).

Article PubMed Google Scholar

McKechnie, I. et al. Archaeological data provide alternative hypotheses on Pacific herring (Clupea pallasii) distribution, abundance, and variability. Proc. Natl. Acad. Sci. https://doi.org/10.1073/pnas.1316072111 (2014).

Article PubMed PubMed Central Google Scholar

Moss, M. L., Rodrigues, A. T., Speller, C. F. & Yang, D. Y. The historical ecology of Pacific herring: Tracing Alaska Native use of a forage fish. J. Archaeol. Sci. Rep. https://doi.org/10.1016/j.jasrep.2015.10.005 (2016).

Article Google Scholar

Kopperl, R. E. Herring use in southern Puget Sound: Analysis of fish remains at 45-KI-437. Northwest Anthropol. Res. Notes 35, 120 (2001).

Google Scholar

McKechnie, I. & Moss, M. L. Meta-analysis in zooarchaeology expands perspectives on Indigenous fisheries of the Northwest Coast of North America. J. Archaeol. Sci. Rep. 8, 470485. https://doi.org/10.1016/j.jasrep.2016.04.006 (2016).

Article Google Scholar

Caldwell, M. E. et al. A birds eye view of northern Coast Salish intertidal resource management features, southern British Columbia, Canada. J. Isl. Coast. Archaeol. 7, 219233. https://doi.org/10.1080/15564894.2011.586089 (2012).

Article Google Scholar

Eells, M. & Castile, G. P. The Indians of Puget Sound: The Notebooks of Myron Eells (University of Washington Press, 1985).

Google Scholar

Smith, M. W. The Puyallup-Nisqually (Columbia University Press, 1940).

Book Google Scholar

Thornton, T. F. & Moss, M. L. Herring and People in the North Pacific: Sustaining a Keystone Species (University of Washington Press, 2021).

Google Scholar

Powell, M. Divided waters: Heiltsuk spatial management of herring fisheries and the politics of native sovereignty. West. Hist. Q. 43, 463484. https://doi.org/10.2307/westhistquar.43.4.0463 (2012).

Article Google Scholar

Gauvreau, A. M., Lepofsky, D., Rutherford, M. & Reid, M. Everything revolves around the herring: The Heiltsukherring relationship through time. Ecol. Soc. https://doi.org/10.5751/ES-09201-220210 (2017).

Article Google Scholar

von der Porten, S., Lepofsky, D., McGregor, D. & Silver, J. Recommendations for marine herring policy change in Canada: Aligning with Indigenous legal and inherent rights. Mar. Policy 74, 6876. https://doi.org/10.1016/j.marpol.2016.09.007 (2016).

Article Google Scholar

Hammond, J. Fish in puget sound. Am. Angler 25, 392393 (1886).

Google Scholar

Bargmann, G. Forage fish management plan (Washington Department of Fish and Wildlife, 1998).

Stick, K. C. & Lindquist, A. 2008 Washington State herring stock status report (Washington Department of Fish and Wildlife, 2009).

Erlandson, J. M. & Rick, T. C. Archaeology meets marine ecology: The antiquity of maritime cultures and human impacts on marine fisheries and ecosystems. Ann. Rev. Mar. Sci. 2, 231251. https://doi.org/10.1146/annurev.marine.010908.163749 (2009).

Article Google Scholar

Hadly, E. A. & Barnosky, A. D. in Conservation Paleobiology: Using the Past to Manage for the Future Vol. 15 (eds Dietl, G. P. & Flessa, K. W.) 3959 (Paleontological Society Papers, 2009).

Wolverton, S. & Lyman, R. L. in Conservation Biology and Applied Zooarchaeology (eds Wolverton, S. & Lyman, R. L.) 122 (University of Arizona Press, 2012).

Rogers, L. A. et al. Centennial-scale fluctuations and regional complexity characterize Pacific salmon population dynamics over the past five centuries. Proc. Natl. Acad. Sci. 110, 1750. https://doi.org/10.1073/pnas.1212858110 (2013).

ADS Article PubMed PubMed Central Google Scholar

Wright, C. A., Dallimore, A., Thomson, R. E., Patterson, R. T. & Ware, D. M. Late Holocene paleofish populations in Effingham Inlet, British Columbia, Canada. Palaeogeogr. Palaeoclimatol. Palaeoecol. 224, 367384. https://doi.org/10.1016/j.palaeo.2005.03.041 (2005).

Article Google Scholar

Thompson, T. Q. et al. Anthropogenic habitat alteration leads to rapid loss of adaptive variation and restoration potential in wild salmon populations. Proc. Natl. Acad. Sci. 116, 177. https://doi.org/10.1073/pnas.1811559115 (2019).

ADS CAS Article PubMed Google Scholar

Halffman, C. M. et al. Early human use of anadromous salmon in North America at 11,500 y ago. Proc. Natl. Acad. Sci. 112, 1234412348. https://doi.org/10.1073/pnas.1509747112 (2015).

ADS CAS Article PubMed PubMed Central Google Scholar

Quinn, T. An environmental and historical overview of the Puget Sound ecosystem (U.S. Geological Survey, 2010).

Kopperl, R. E., Taylor, A. K., Miss, C. J., Ames, K. M. & Hodges, C. M. The Bear Creek Site (45KI839), a Late Pleistocene-Holocene transition occupation in the Puget Sound lowland, King County, Washington. PaleoAmerica 1, 116120. https://doi.org/10.1179/2055556314Z.0000000004 (2015).

Article Google Scholar

Gunther, E. Klallam Ethnography (University of Washington Press, 1927).

Google Scholar

Elmendorf, W. W. & Kroeber, A. L. The Structure of Twana Culture (Washington State University Press, 1992).

Google Scholar

The Suquamish Tribe. Fish consumption survey of the Suquamish Indian tribe of the Port Madison Indian Reservation, Puget Sound Region (Suquamish, WA, 2000).

Suttles, W. P. The Economic Life of the Coast Salish of Haro and Rosario Straits (Garland Publishing, 1974).

Google Scholar

Lane, B. The Indian herring fishery from the earliest times to the mid-nineteenth century (United States Depatment of the Interior, 1974).

Stein, J. K. in Vashon Island Archaeology: A View from Burton Acres Shell Midden (eds Stein, J. K. & Phillips, L. S.) 516 (Burke Musseum, 2002).

Lewarch, D. E. et al. Data recovery excavations at the Bay Street Shell Midden (45KP115), Kitsap County, Washington (Larson Anthropological Archaeological Services Limited, 2002).

De Danaan, L. in Vashon Island Archaeology: A View from Burton Acres Shell Midden (eds Stein, J. K. & Phillips, L. S.) 1731 (Burke Museum, 2002).

Stein, J. K. in Vashon Island Archaeology: A View from Burton Acres Shell Midden (eds Stein, J. K. & Phillips, L. S.) 4764 (Burke Musseum, 2002).

Yang, D. Y. & Watt, K. Contamination controls when preparing archaeological remains for ancient DNA analysis. J. Archaeol. Sci. 32, 331336. https://doi.org/10.1016/j.jas.2004.09.008 (2005).

Article Google Scholar

Yang, D. Y., Liu, L., Chen, X. & Speller, C. F. Wild or domesticated: DNA analysis of ancient water buffalo remains from north China. J. Archaeol. Sci. 35, 27782785. https://doi.org/10.1016/j.jas.2008.05.010 (2008).

Article Google Scholar

Maddox, D. M. et al. A mutation in Syne2 causes early retinal defects in photoreceptors, secondary neurons, and Mller Glia. Invest. Ophthalmol. Vis. Sci. 56, 37763787. https://doi.org/10.1167/iovs.14-16047 (2015).

CAS Article PubMed PubMed Central Google Scholar

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Ancient DNA reveals phenological diversity of Coast Salish herring harvests over multiple centuries | Scientific Reports - Nature.com

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