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Category Archives: Transhuman News
Devangshu Datta: What's in a genome
Posted: September 20, 2012 at 10:12 pm
Devangshu Datta: What's in a genome The results of the Encode project may not be sensational but will clearly accelerate research in several key areas Devangshu Datta / New Delhi Sep 21, 2012, 00:55 IST
In early September, several teams working on the human genome published a flood of papers detailing their findings. The Encyclopaedia of DNA Elements Projects (Encode) has made great progress in detailing human genome functions.
This is the biggest set of breakthroughs since the human genome project (HGP) mapped the DNA sequence between 2000 and 2003. However, Encodes results have caused some controversy within the scientific community. The results are not being disputed. But several scientists have stated the press releases were misleading or misinterpreted.
Unusually, for a collaborative project of this scale, the papers were embargoed to ensure coordinated release. The raw data were made available for use, however. All data and papers are now freely available with a special search application on the portal, http://nature. com/encode/.
DNA (deoxyribonucleic acid) carries the information that offers inheritable characteristics. The HGP identified 20,000-plus DNA genes that carried protein-coded information unique to individuals. The coded sequences are responsible for most cell functions. If that set of protein-coded genes is replicated, it produces a clone, or identical twin.
But the coded DNA sequences are a very small proportion roughly 1 to 1.5 per cent of the entire genome. The genome contains many more DNA sequences that possess no protein-coding. It also has RNA (ribonucleic acid) sequences. RNA is required to copy and replicate DNA. RNA passes through the nuclear membrane of cells carrying selective DNA information to be replicated.
It was known that non-coded DNA sequences included switches that controlled and regulated the activity of coded sequences. However, many non-coded sequences also seem redundant. Some are broken bits of discarded genes and disabled viruses. Even some coded DNA is redundant. One hypothesis is that these bits of useless DNA are leftovers from evolutionary history.
Since functions of specific bits of non-coded DNA werent known and since some bits were apparently useless, these sections were misleadingly labelled junk. They are also referred to as dark matter.
Encode has figured out the biochemical activity in much of the junk and also confirms that there are many switches controlling the coded sections. The switches tell coded genes when to switch on and off and determine, for example, which cells become muscles, and which pancreas cells, or neurons.
Encode claims that at least 80 per cent of the junk is biochemically active. This is where confusion has arisen. It was reported that 80 per cent of junk was useful. But biochemically active doesnt necessarily translate to useful. Carrying a useless, disabled gene doesnt hurt the organism and most such sequences are biochemically active.
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Devangshu Datta: What's in a genome
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Oyster genome mystery unravelled
Posted: at 10:12 pm
20 September 2012 Last updated at 04:13 ET By Helen Briggs BBC News
A detailed map of the Pacific oyster genome has been unveiled by scientists.
The research, published in the journal Nature, shows how oysters manage to survive the harsh environment of the estuary and sea shore.
The mollusc has scores of genes that protect it from extremes of temperature and saltiness, where the land meets the sea.
Oyster farming is a multi-million dollar industry, centred around China, Japan, Korea and the US.
There's clearly been adaptations over millions of years to allow these animals to cope with an incredibly harsh environment
The genome map gives an insight into how the oyster became adapted to marine life, and how it formed its complex shell.
It also reveals secrets that may help scientists breed faster-growing oysters with a better survival rate.
A team of international scientists, from China, the US, and Europe, carried out the genome sequencing work.
Peter Holland, professor of zoology at the University of Oxford, and a co-author of the research, says the oyster has more than 80 genes that protect the oyster from stress.
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Kiwi Company Provides Scalp Relief For Coeliac Community
Posted: at 10:12 pm
Kiwi Company Provides Scalp Relief For Coeliac Community
TAURANGA, Thursday 20th September 2012: Psoriasis and dandruff are the lesser known but irritating side effects of coeliac disease - for which New Zealand has one of the highest rates globally and a leading brand of hair formulations is offering the gluten-free community some welcome respite.
Mediceuticals specialist scalp and hair loss formulations proved extremely popular at the recent Auckland and Wellington Gluten Free Food and Allergy shows for those suffering from psoriasis and associated scalp conditions.
Mediceuticals NZ Ltd spokesperson, Geoff Grace says, When your digestive system is out of balance, your scalp and skin can also show sensitivity. For some people a flaky, itchy scalp can be a socially worrying health problem associated with coeliac disease. Our natural plant-based dermatological products have provided welcome relief to coeliac sufferers with scalp concerns.
There are an estimated 14,000 undiagnosed cases of coeliac disease in New Zealand, with Canterbury in particular having one of the highest rates in the world (1.2 per cent).
At the upcoming Christchurch Gluten Free Food and Allergy show on October 27th and 28th, Mediceuticals will be demonstrating its Scalp Therapies range, specifically designed to treat and control a broad spectrum of common scalp and skin disorders.
Both genetic and environmental factors play important roles in coeliac disease and those who attended the recent Gluten Free Food and Allergy shows were a very health-focused, educated audience actively seeking solutions for their health concerns, Grace says.
They quickly understood how Mediceuticals products worked and were excited about the benefits we could offer coeliac disease sufferers who struggle with psoriasis and other scalp and skin conditions.
Grace says Mediceuticals Scalp Therapies range has been developed to treat and control scalp and skin disorders like dandruff, psoriasis, oily scalp and dry scalp. Products within the range are designed to be mixed & matched depending on the specific scalp concern.
X-Folate is a specialist shampoo for persistent dandruff and psoriasis that reduces cell production whilst removing the flaky, yellow dead cells associated with dandruff. It is a gentle cleanser that also provides important UV protection.
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Kiwi Company Provides Scalp Relief For Coeliac Community
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$1.8M Grant Supports Investigation of Psoriasis Link to CVD
Posted: at 10:12 pm
Newswise Armed with a new $1.8 million grant from the National Institute of Arthritis and Musculoskeletal and Skin Diseases, dermatology researcher Nicole Ward, PhD, assistant professor of dermatology and neurosciences at Case Western Reserve School of Medicine, will lead a study examining the link between psoriasis and heart attack and stroke.
The work will advance research conducted earlier this year in Dr. Wards lab. She and colleagues at the University Hospitals Harrington Heart & Vascular Institute published a major discovery that psoriasis could cause the development of cardiovascular disease in mouse models. The team of researchers also found that aggressive treatment of the skin disease reversed the cardiovascular disease.
Prior to our recent publication, the evidence linking these two diseases was entirely at the epidemiological level and didnt show mechanistic insight for why this occurred, says Dr. Ward, who is also a scientist with the Murdough Family Center for Psoriasis at University Hospitals Case Medical Center. Our goal was to examine whether psoriasis influences cardiovascular disease. Psoriasis was previously thought of as a disease that severely affected skin appearance as well as the patients quality of life. We now know it decreases a patients life span by seven years.
Dr. Ward and colleagues will work to identify intrinsic changes in the skin cells and the subsequent cascade of events that leads to blood-clot formation in either heart attack or stroke. By identifying this trigger, the researchers hope to provide first-ever evidence that cell-specific events in psoriasis can be targeted for treatment.
This preclinical evidence will impact the approach to patient clinical care, as doctors will need to be more aggressive in monitoring for cardiovascular disease and other co-morbidities in those with moderate to severe-plaque psoriasis. By treating and keeping the skin disease in check, the risk for heart-related inflammation is reduced as well. In addition, they will conduct preclinical testing of the efficacy of current psoriasis medication on cardiovascular disease.
Dr. Ward's research discovery is quite exciting, says Kevin Cooper, MD, professor and chair of the Department of Dermatology at Case Western Reserve School of Medicine and University Hospitals Case Medical Center, It demonstrates for the first time that a mouse model of psoriasis exhibits a cardiovascular co-morbidity often seen in human psoriasis patients. Importantly, the basis of Dr. Ward's grant demonstrates that aggressively treating the skin disease improved the cardiovascular complications associated with psoriasis. The work supported by this grant will help to pinpoint how current therapeutics for psoriasis may also improve co-morbidities associated with chronic skin inflammation.
This research was funded by the National Institutes of Health, National Psoriasis Foundation, and the Murdough Family Center for Psoriasis.
###
About Case Western Reserve University School of Medicine
Founded in 1843, Case Western Reserve University School of Medicine is the largest medical research institution in Ohio and is among the nation's top medical schools for research funding from the National Institutes of Health. The School of Medicine is recognized throughout the international medical community for outstanding achievements in teaching. The School's innovative and pioneering Western Reserve2 curriculum interweaves four themes--research and scholarship, clinical mastery, leadership, and civic professionalism--to prepare students for the practice of evidence-based medicine in the rapidly changing health care environment of the 21st century. Eleven Nobel Laureates have been affiliated with the school.
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$1.8M Grant Supports Investigation of Psoriasis Link to CVD
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$1.8 million grant supports investigation of psoriasis link to cardiovascular disease
Posted: at 10:12 pm
Public release date: 20-Sep-2012 [ | E-mail | Share ]
Contact: Jessica Studeny jessica.studeny@case.edu 216-368-4692 Case Western Reserve University
Armed with a new $1.8 million grant from the National Institute of Arthritis and Musculoskeletal and Skin Diseases, dermatology researcher Nicole Ward, PhD, assistant professor of dermatology and neurosciences at Case Western Reserve School of Medicine, will lead a study examining the link between psoriasis and heart attack and stroke.
The work will advance research conducted earlier this year in Dr. Ward's lab. She and colleagues at the University Hospitals Harrington Heart & Vascular Institute, published a major discovery that psoriasis could cause the development of cardiovascular disease in mouse models. The team of researchers also found that aggressive treatment of the skin disease reversed the cardiovascular disease.
"Prior to our recent publication, the evidence linking these two diseases was entirely at the epidemiological level and didn't show mechanistic insight for why this occurred," says Dr. Ward, who is also a scientist with the Murdough Family Center for Psoriasis at University Hospitals Case Medical Center. "Our goal was to examine whether psoriasis influences cardiovascular disease. Psoriasis was previously thought of as a disease that severely affected skin appearance as well as the patient's quality of life. We now know it decreases a patient's life span by seven years."
Dr. Ward and colleagues will work to identify intrinsic changes in the skin cells and the subsequent cascade of events that leads to blood-clot formation in either heart attack or stroke. By identifying this trigger, the researchers hope to provide first-ever evidence that cell-specific events in psoriasis can be targeted for treatment.
This preclinical evidence will impact the approach to patient clinical care, as doctors will need to be more aggressive in monitoring for cardiovascular disease and other co-morbidities in those with moderate to severe-plaque psoriasis. By treating and keeping the skin disease in check, the risk for heart-related inflammation is reduced as well. In addition, they will conduct preclinical testing of the efficacy of current psoriasis medication on cardiovascular disease.
"Dr. Ward's research discovery is quite exciting," says Kevin Cooper, MD, professor and chair of the Department of Dermatology at Case Western Reserve School of Medicine and University Hospitals Case Medical Center, "It demonstrates for the first time that a mouse model of psoriasis exhibits a cardiovascular co-morbidity often seen in human psoriasis patients. Importantly, the basis of Dr. Ward's grant demonstrates that aggressively treating the skin disease improved the cardiovascular complications associated with psoriasis. The work supported by this grant will help to pinpoint how current therapeutics for psoriasis may also improve co-morbidities associated with chronic skin inflammation."
###
This research was funded by the National Institutes of Health, National Psoriasis Foundation, and the Murdough Family Center for Psoriasis.
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Immediate withdrawal of unsafe GE corn vital
Posted: at 3:15 am
20 September 2012
Immediate withdrawal of unsafe GE corn vital
Research released yesterday shows the Governments lax policy on genetic engineering is putting the health of New Zealanders at risk, the Green Party said today.
The peer-reviewed research, published in the Journal of Food and Toxicology, shows disturbing results about the health effects of eating a genetically engineered corn that has been approved for human consumption in New Zealand for the last 10 years.
The rats in this study, fed with Roundup ready corn with levels of Roundup that are within approved limits, developed mutations and tumours at a hugely alarming rate.
There are now huge concerns over the safety of this corn. Eating this corn has now been proven to cause the growth of tumours, so why was it approved a decade ago without the necessary evidence that it was safe to eat? Green Party genetic engineering spokesperson Steffan Browning asked today.
New Zealand has more than 70 GE foods approved for sale in New Zealand to date, and these approvals were mostly based on health studies that were 90 days long or less. This new research recorded effects for two years and the tumours and deaths showed up after that previous 90 day cut off point.
We now know that eating this corn, called NK603, causes tumours and we cant be sure that any products containing these GE foods currently out there being eaten by New Zealanders are safe either.
FSANZ must immediately recall any products that have this strain of GE corn as an ingredient and reassess all previous approvals for long term eating safety.
New Zealanders dont want to be part of a science experiment. They rely on the Government to make sure these products are safe before they are released for human consumption.
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Immediate withdrawal of unsafe GE corn vital
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Immediate withdrawal of unsafe GE corn vital – Greens
Posted: at 3:15 am
Research released yesterday shows the Governments lax policy on genetic engineering is putting the health of New Zealanders at risk, the Green Party said today.
The peer-reviewed research, published in the Journal of Food and Toxicology, shows disturbing results about the health effects of eating a genetically engineered corn that has been approved for human consumption in New Zealand for the last 10 years.
The rats in this study, fed with Roundup ready corn with levels of Roundup that are within approved limits, developed mutations and tumours at a hugely alarming rate.
"There are now huge concerns over the safety of this corn. Eating this corn has now been proven to cause the growth of tumours, so why was it approved a decade ago without the necessary evidence that it was safe to eat?" Green Party genetic engineering spokesperson Steffan Browning asked today.
"New Zealand has more than 70 GE foods approved for sale in New Zealand to date, and these approvals were mostly based on health studies that were 90 days long or less. This new research recorded effects for two years and the tumours and deaths showed up after that previous 90 day cut off point.
"We now know that eating this corn, called NK603, causes tumours and we cant be sure that any products containing these GE foods currently out there being eaten by New Zealanders are safe either.
"FSANZ must immediately recall any products that have this strain of GE corn as an ingredient and reassess all previous approvals for long term eating safety.
"New Zealanders dont want to be part of a science experiment. They rely on the Government to make sure these products are safe before they are released for human consumption.
"Despite legal requirements, most GE foods are unlabelled so New Zealanders cant even choose to avoid them.
"I am hopeful that this study is on the top of the Minister for Food Safetys reading list this morning and that she will take immediate action to protect the health of New Zealanders.
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George Zimmerman: No DNA evidence of a struggle for his gun
Posted: at 3:14 am
George Zimmerman claims self defense in the killing of Trayvon Martin. But there's no DNA evidence that Trayvon Martin ever touched George Zimmerman's gun.
Forensic tests made public Wednesday show that George Zimmerman's was the only DNA that could be identified on the grip of the gun used to fatally shoot 17-year-old Trayvon Martin.
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The results rule out Martin's DNA from being on the gun's grip. Zimmerman's DNA also was identified on the gun's holster, but no determination could be made as to whether Martin's DNA was on the gun's holster, according to the report from the Florida Department of Law Enforcement.
Zimmerman is charged with second-degree murder for fatally shooting Martin during a confrontation in a gated community in Sanford in February. Zimmerman is pleading not guilty, claiming self-defense.
A delay in Zimmerman's arrest led to nationwide protests.
RECOMMENDED: How 5 black men view the Trayvon Martin case
The question of whose DNA is on the gun and holster could play a role in Zimmerman's defense.
Zimmerman says Martin had been on top of him, slamming his head against the ground and smothering his mouth and nose with his hand and arm when he grabbed his gun from a holster on his waist before Martin could get it. He shot the teenager once in the chest.
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George Zimmerman: No DNA evidence of a struggle for his gun
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George Zimmerman's DNA, not Trayvon Martin's, found on gun
Posted: at 3:14 am
Only DNA from George Zimmerman was found on the grip of the gun that was used in the fatal shooting of unarmed teenager Trayvon Martin, according to DNA test results released Wednesday.
The test results were in the latest batch of discovery material released by officials in the notorious murder case, which has become a national flashpoint in race relations and gun laws. Zimmerman, 28, is free on bail awaiting trial on charges of second-degree murder in the killing of Martin, an African American teenager, who was shot to death in a confrontation at a gated community in Sanford, Fla., on Feb. 26.
The tests on the gun and the holster were performed by the Florida Department of Law Enforcement. They found Zimmermans DNA on the gun but could not find any of Martin's. No determination could be made as to whether Martin's DNA was on the holster.
PHOTOS: Tense moments from Trayvon Martin case
Zimmerman has acknowledged shooting Martin, but insists he acted in self-defense in the wake of a confrontation that left him injured.
The DNA findings could play a role in the trial, allowing the prosecution to argue against self-defense since it now seems that Martin never touched the weapon. The defense could counter that Zimmerman shot before Martin could get to the gun.
Zimmerman was not arrested the night of the shooting. After weeks of protests about that fact, a special prosecutor charged Zimmerman, a neighborhood watch volunteer, with second-degree murder.
Among other material released Wednesday was an interview with a clerk of the convenience store where Martin had gone to buy a package of Skittles and a can of iced tea. Martin was returning from the store when the confrontation with Zimmerman took place. The unidentified clerk told authorities he had no recollection of serving Martin.
To be honest, I don't even remember that day, he said.
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George Zimmerman's DNA, not Trayvon Martin's, found on gun
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GnuBIO Awarded $4.5 Million in Funding from the National Human Genome Research Institute to Develop Lower Cost Genome …
Posted: at 3:14 am
CAMBRIDGE, Mass.--(BUSINESS WIRE)--
GnuBIO http://www.gnubio.com announced today that it has been awarded a $4.5 million Phase II SBIR grant over the next three years through the National Human Genome Research Institutes (NHGRI) Advanced DNA Sequencing Technology Program. After a rigorous process, the grant committee at the NIH chose six projects to fund for this competitive awards program aimed at further advancing DNA sequencing technologies. Out of the total of $19 million, the NHGRI awarded GnuBIO the largest annual amount.
The purpose of the NHGRI grant program is to significantly reduce the cost of genome sequencing while improving both accuracy and speed, while significantly reducing the cost of sequencing a genome. GnuBIO, whose platform is based on Microfluidic DNA Sequencing, will use this funding to further develop its core technology towards rapid and accurate whole genome sequencing for less than $1000.
GnuBIO is commercializing a platform technology that integrates target enrichment, PCR, sequencing and informatics into a single system. The instrument has demonstrated sequencing of genomic DNA amplicons with read lengths up to 1000bp and accuracy higher than 99.9% per base. Unlike other currently available commercial systems, the GnuBIO http://www.gnubio.com platform encompasses all of the steps required for DNA sequencing into a single cartridge, thereby obviating any sample preparation that is required for all other commercial sequencing platforms.
Sequencing reactions on the GnuBIO http://www.gnubio.com platform take place inside droplets using minute reagent volumes. The NHGRI grant will be used to further reduce the size of these droplets and increase parallel processing of sequencing reactions to enable extremely low cost and rapid sequencing of large targets such as exomes and genomes, said Tal Raz, Vice President of Molecular Biology at GnuBIO. Currently, GnuBIO is in the process of preparing for the launch of its beta system, a platform that is capable of inline selection of sequencing targets, inline PCR, inline sequencing, and real-time informatics. The commercial system has a targeted price of $50K USD.
The grant award comes at an ideal time for us as it complements our strategy to launch an affordable sequencing platform that is practical for everyday patient care, said John Boyce, President and CEO of GnuBIO. This grant will enable us to expand our R&D capacity and enhance our core technology by increasing the throughput capability and enabling whole-genome sequencing.
About GnuBIO: GnuBIO is a privately-held company developing next-generation desktop DNA sequencing technology that will compartmentalize the entire DNA sequencing process, combining all of the steps required for sequencing in a single system, and providing the only fully integrated next-generation sequencing workflow.The GnuBIO sequencingtechnology is based on an emulsion based microfluidic technology which also provides a scalable sequencing solution that allows for interrogation of single genes, gene panels or whole genomes. The user of his GnuBIO system simply injects the patient sample into the GnuBIO http://www.gnubio.com cartridge, the appropriate panel is run inclusive of gene capture, PCR, sequencing, and informatics analysis and the results are ready within hours. Unlike any other DNA sequencing system, the entire process is all on the chip, simplifying the complex sample preparation process and breaking the barrier of an obstacle that has prevented the widespread adoption of DNA sequencing.
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GnuBIO Awarded $4.5 Million in Funding from the National Human Genome Research Institute to Develop Lower Cost Genome ...
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