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Two-day test can spot gene diseases in newborns
Posted: October 3, 2012 at 9:17 pm
WASHINGTON (AP) Too often, newborns die of genetic diseases before doctors even know what's to blame. Now scientists have found a way to decode those babies' DNA in just days instead of weeks, moving gene-mapping closer to routine medical care.
The idea: Combine faster gene-analyzing machinery with new computer software that, at the push of a few buttons, uses a baby's symptoms to zero in on the most suspicious mutations. The hope would be to start treatment earlier, or avoid futile care for lethal illnesses.
Wednesday's study is a tentative first step: Researchers at Children's Mercy Hospital in Kansas City, Mo., mapped the DNA of just five children, and the study wasn't done in time to help most of them.
But the hospital finds the results promising enough that by year's end, it plans to begin routine gene-mapping in its neonatal intensive care unit and may offer testing for babies elsewhere, too while further studies continue, said Dr. Stephen Kingsmore, director of the pediatric genome center at Children's Mercy.
"For the first time, we can actually deliver genome information in time to make a difference," predicted Kingsmore, whose team reported the method in the journal Science Translational Medicine.
Even if the diagnosis is a lethal disease, "the family will at least have an answer. They won't have false hope," he added.
More than 20 percent of infant deaths are due to a birth defect or genetic diseases, the kind caused by a problem with a single gene. While there are thousands of such diseases from Tay-Sachs to the lesser known Pompe disease, standard newborn screening tests detect only a few of them. And once a baby shows symptoms, fast diagnosis becomes crucial.
Sequencing whole genomes all of a person's DNA can help when it's not clear what gene to suspect. But so far it has been used mainly for research, in part because it takes four to six weeks to complete and is very expensive.
Wednesday, researchers reported that the new process for whole-genome sequencing can take just 50 hours half that time to perform the decoding from a drop of the baby's blood, and the rest to analyze which of the DNA variations uncovered can explain the child's condition.
That's an estimate: The study counted only the time the blood was being decoded or analyzed, not the days needed to ship the blood to Essex, England, home of a speedy new DNA decoding machine made by Illumina, Inc. or to ship back the results for Children's Mercy's computer program to analyze. Kingsmore said the hospital is awaiting arrival of its own decoder, when 50 hours should become the true start-to-finish time.
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Two-day test can spot gene diseases in newborns
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Atkins, Benn show differences in hour-long debate
Posted: at 9:17 pm
Democratic State Rep. Cory Atkins and Republican challenger Michael Benn, both of Concord, faced off on issues ranging from job creation to gay marriage during a one-hour debate Tuesday night on Chelmsfords Politically Incorrect show.
Both are seeking the 14th Middlesex House of Representatives seat in a district that includes all or parts of Acton, Carlisle, Chelmsford and Concord.
Host Carmen Christiano gave both candidates two minutes to answer each of 11 questions, followed by an open debate.
One of the first questions fired by Christiano asked how the state government could help the private sector create more jobs.
To make it less difficult to do business here in Massachusetts. So lower tax rates is one(and) regulation reform. If the government gets too powerful, then there starts to be more regulations, said Benn.
Cory, who took a similar stance, emphasized the state investing in education and the importance of matching certain industries with particular areas in the state to enhance economic growth.
That is our (the states) biggest natural resource, a trained workforceOne of the biggest things we need to do is streamline the currentrecruiting businesses in Massachusetts, said Atkins, who credited community colleges for driving workforce training.
Next, Christiano asked the candidates position on all three of the state ballot questions. The first question, regarding the use of medical marijuana, yielded a difference of opinion between the two candidates.
Im in favor of anything prescribed legally that will alleviate somebodys pain and suffering, said Atkins. We have to be very, very stringent with our legal safeguards and just how people are going to get itjust like with any other controlled substance.
But Benn said supporting such use would be an incremental way toward full legalization of marijuana and he does not support the question.
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When Will It Be Politically Incorrect To Associate SEO With Scam?
Posted: at 9:17 pm
Jay Rockefeller and the US Senate Committee sent a letter to Google, Microsoft and Yahoo asking them to do a better job preventing "their search engines from being gamed through search engine optimization tactics."
Seriously, "search engine optimization tactics?" Really? The letter goes on, to explain that this is "scam involving moving services, which has seen affected consumers lose personal possessions and pay thousands of dollars above quoted prices to dodgy moving companies."
When does it become politically incorrect to associate SEO with scams and spam? Why can't they use a different job classification to talk about spammy SEO? Why not call it search spam tactics? By call it search engine optimization tactics?
I think we need one of us in the senate to write a letter to the US Senate Committee on how to classify our industry in a politically correct manner.
In any event, both TechCrunch and Search Engine Land have another view of this story. I am just covering it from a community perspective.
Forum discussion at WebmasterWorld.
Note: This story was scheduled to be posted on this day, but was written earlier.
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When Will It Be Politically Incorrect To Associate SEO With Scam?
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YouTube goes legit in Turkey, bringing more sales and more censorship
Posted: at 9:17 pm
Many of the major web services have been expanding to emerging markets over the last few years. Googles travails in China are well documented, for example.
Now Googles YouTube is setting up shop in Europes fastest growing internet market with official sanction but that may call up the same kind of ethical concerns its parent has seen elsewhere.
Turkey says it has successfully convinced YouTube to operate at youtube.com.tr a fact that means the video site will have to comply with the countrys own domestic laws on such things as censorship.
Transport and communications minister Binali Yildirim (via Reuters):
It will now be in a binding and critical position to implement court decisions and remove any objectionable publications. Further more it will also pay taxes on its operations.
The issues is thrown in to relief by last weeks government edict that the controversial video, The Innocence of Muslims, be censored in Turkey.
Google, Twitter and Facebook last year said they would comply with the local laws of countries in which they operate.
Turkey is not considered a wildly oppressive state, but its stance of freedom of expression has been a sticking point in Turkeys efforts to gain European Union membership.
On the other hand, Turkey represents a tremendous business opportunity. With a young population, its online penetration surged from 15 percent in 2005 to 45 percent by late in 2011. And its 35 million users spend so much time online that they make Turkey the number-three country for time spent online per user.
YouTube.com was already the number-five site in the country last year, according to comScore.
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YouTube goes legit in Turkey, bringing more sales and more censorship
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Letter: White House guilty of censorship by stealth in seeking YouTube removal
Posted: at 9:17 pm
01Oct12
This letter appeared in the Financial Times
Sir,Your editorial (Obamas realist foreign policy, September 27) claims that free speech purists were offended by Barack Obamas comments onInnocence of Muslims. As an organisation that defends free expression around the world, Index on Censorship would certainly include itself in the free speech purist camp. Even the president of the US is entitled to say what he likes under the first amendment, as long as he upholds thatvitalpart of the US constitution for all.
In his address this week to world leaders at the UN General Assembly, President Obama defended the right of all people to express their views even views that we disagree with.
However, in reality, the White House is guilty of reaching out toGoogleto look into taking the video off YouTube on the grounds that it breached Googles terms of service, justifying its removal. This intervention by the US government suggests censorship by stealth, whereby governments can claim to protect free speech while putting pressure on middle men such as internet service providers to censor for them. All of which raises the question: Who should control the internet?
Kirsty Hughes, Chief Executive, Index on Censorship, London EC1, UK
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Letter: White House guilty of censorship by stealth in seeking YouTube removal
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Bike Matadors and Censorship Towels Spring From Ad Firm’s Creative Offshoot
Posted: at 9:17 pm
WTF?
Thats what several bicyclists in Minneapolis were probably thinking recently as they encountered a fully dressed matador squaring off with them on as they rode down one of the citys many bike paths.
Turns out it was an art project from the Carmichael Collective, which over the past 10 months has created a series of similarly wacky and creative stunts.
Its all about creativity for creativitys sake, says Dave Damman, the founder of the collective, which is comprised of employees from Carmichael Lynch, an advertising firm based in that city.
Back in May we covered a project called Bug Memorials which was one of the collectives first projects and ever since theyve been pushing out new ideas as a way to help employees at the firm get their creative juices flowing.
Damman, who is also the chief creative officer for Carmichael Lynch, says that when staffers participate in the collective he doesnt want them worrying about meeting client needs or tailoring projects to reach a specific audience. He just wants them to have fun and think outside the box.
The mantra for the whole thing is What if? he says.
Like many of the collectives projects, the idea for the Bike Matador just popped into an employees head one day. Damman says Thako Harris was riding his bike to work and thought about how he might spruce up the commute.
If he was doing this with cars he probably would have been run over or at least flipped off, Damman says. But none of the bikers had unfavorable responses.
Other recent projects include the Censorship Towel, Piata Anatomy and Urban Plant Tags.
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Bike Matadors and Censorship Towels Spring From Ad Firm’s Creative Offshoot
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Glenn Beck's extraordinary open letter to Muse
Posted: at 9:16 pm
Glenn Beck. Photograph: Getty Images
In a bizarre story of unrequited love, American conservative political commentator Glenn Beck has written a heartfelt open letter to Muse frontman, Matt Bellamy.
The Fox News pundit, famous for his sharp tongue, was responding to recent comments made by the singer in an interview with the Observer on Sunday, in which Bellamy revealed that the band had repeatedly denied the use of the track Uprising for American political campaigns, calling its popularity among the farright weird.
In the US, the conspiracy theory subculture has been hijacked by the right to try to take down people like Obama and put forward rightwing libertarianism, he said, before going on to describe himself as a leftleaning libertarian.
Muse and Glenn Beck have a history: Beck previously endorsed Muses 2009 album The Resistance on his radio show and even likened their lyrical content to his own brand of republicanism, prompting drummer Dom Howard to label Beck a crazy rightwinger.
As uncomfortable as it might be for you, I will still play your songs loudly, the letter reads. To me your songs are anthems that beg for choruses of unity and pose the fundamental question facing the world today can man rule himself?
Beck then goes on (and on) to suggest that Bellamys own ideology isnt far off his own principles: in the Venn Diagram of American politics, where the circles of crimson and blue overlap, theres a place where you and I meet.
The rest of the letter then protractedly explains why he believes in Libertarianism before puzzlingly quoting lyrics from their fourth album and wishing them the best of luck on their new record.
Experience the madness, in full, below:
Dear Matthew, I read your comments in the Guardian via Rolling Stone last week and feel like with a little work we could better understand each other.
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Glenn Beck's extraordinary open letter to Muse
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U.S. Department of Defense Awards Penn Researchers Funding to Investigate New Anti-Infection Drug
Posted: at 9:16 pm
Phase 2 human trial set to examine effectiveness of topical gel in treating post-surgical orthopedic infections
Newswise PHILADELPHIA A team of researchers led by Samir Mehta, MD, chief of the Orthopaedic Trauma & Fracture Service at the Perelman School of Medicine at the University of Pennsylvania, has received a $2.5 million grant from the Congressionally Directed Medical Research Program (CDMRP), provided through the U.S. Department of Defense (DoD), to begin Phase 2 human trials of a study that examines the effective treatment of post-surgical orthopedic infections using Microbion Corporations topical BisEDT drug. The University of Pennsylvania will work with a team of researchers from Microbion and the University of California-San Francisco on the trial, set to begin pending FDA approval.
Were honored to be given this award from the DoD, and are hopeful that the Phase 2 trial will allow us to offer improved treatments and standards of care to a significant number of patients, said Mehta. Orthopaedic trauma and fracture patients are at an increased risk for infection. If successful, this new treatment strategy could be a significant step toward reducing instances of amputation, disability, and even death.
Studies show that patients requiring orthopaedic trauma surgery may be three times more likely to experience post-operative infections (8.7 percent) than patients undergoing other forms of surgery (2.8 percent) as a result of the high-energy nature of the injury. With approximately 2.6 million orthopaedic devices implanted annually in the United States, approximately 4.3 percent (112,000 patients) will suffer from a post-operative infection.
Orthopaedic extremity injuries also constitute the majority (65 percent) of combat casualties experienced in recent U.S. military conflicts. The risk of infection developing after surgical treatment of traumatic, open military wounds represents an extremely serious threat; reports indicate that military wound infection rates may be as high as 77 percent. Such infections frequently lead to death, amputation, disability, and other significant morbidity, despite the best available care.
The goal of our study is to examine the efficacy and safety of administering a single application of Microbions topical BisEDT gel to infected extremity wounds, said Annamarie Horan, MPA, PhD, director of Clinical Research for Penn Orthopaedics. The gel is not a replacement for standard antibiotics, but the promising results of the Phase 1 trial provide strong evidence suggesting the drug may be an effective supplemental treatment.
Phase 1 human trials of BisEDT were successfully completed in 2011. In June 2012, the CDMRP award team met with the FDA in Washington D.C. to discuss the teams plan to advance to Phase 2 human clinical studies for the treatment of infections associated with orthopedic trauma. Clinical studies for Phase 2 will begin next year at the Hospital of the University of Pennsylvania, and at UCSF/San Francisco General Hospital.
Last year, the World Health Organization noted a significant rise in the rate of infections that are able to ward off antibiotic treatment. The alarming rate of antibiotic resistant infections has since been labeled a global health crisis. The research team is hopeful that future research and development of drugs like BisEDT will lead to new standards of health care and improved treatments for all patients.
Dr. Mehta and Dr. Horan do not have any financial affiliation with Microbion Corporation.
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Outrage over human errors in deadly Hong Kong boat crash
Posted: at 9:16 pm
The Associated Press Published Wednesday, Oct. 3, 2012 7:15AM EDT Last Updated Wednesday, Oct. 3, 2012 8:28AM EDT
HONG KONG -- When two boats filled with people collided on Hong Kong's busy waterways, the impact knocked a hole in one vessel's engine room and the water poured in too fast to stop it from sinking. Passengers struggled to find life vests and dozens drowned in the turbulent waters.
Rather than rush to help, however, the crew of the other vessel, a ferry, seemed paralyzed, according to witnesses. After pausing briefly near the doomed ship filled with holiday revelers, the ferry continued on to its berth.
Shock over Monday's crash, which left 38 dead, gave way to outrage Wednesday over what experts concluded was human error. Investigators have not publicly offered a theory of how the collision occurred but have arrested seven crew members, including both captains.
The ferry company denied accusations that the boat left immediately after the crash, but did not say whether its crew did anything to help the other vessel as it rapidly sank.
The captain of the Sea Smooth ferry was in a hospital with rib injuries Wednesday, said Nelson Ng, general manager of Hong Kong and Kowloon (Ferry) Holdings. He said staff members tried to talk to the captain, but he added, "We have to wait for the psychologist's report. ... He doesn't really want to say anything."
When asked whether the captain blames himself for the accident, Ng said, "He's emotionally depressed, so I believe he probably does." He did not release the captain's name.
The collision, Hong Kong's deadliest maritime accident since 1971, has hit at the heart of the semiautonomous territory's identity. Fleets of ferry boats form the backbone of the transport network, and much of Hong Kong's economy relies on its reputation as a well-managed shipping hub.
"We cannot help but be shocked and angry," the English-language South China Morning Post said in an editorial Wednesday. It said "pinpointing fault and ensuring that there is no repeat" would be a matter of "safety, reputation and financial well-being."
All 38 people killed had been on the Lamma IV, a boat owned by utility company Hong Kong Electric, which was taking about 120 of its workers and their families to watch fireworks in celebration of China's National Day and mid-autumn festival.
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Outrage over human errors in deadly Hong Kong boat crash
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Justice names new chief
Posted: at 9:16 pm
Wednesday 03 October 2012 by John Hyde
Campaign group Justice has appointed human rights lawyer Andrea Coomber (pictured) as its new director.
Coomber, currently legal director of the international human rights organisation Interights, replaces Roger Smith. Smith announced his decision to step down in May after 11 years in the post.
Coomber will become the fifth director in Justices 55-year history when she takes up the post on 18 February 2013.
She said: Justice has a rich history in this country and an international reputation for excellence in providing thoughtful legal analysis of critical rule of law and human rights issues.
I am honoured to be part of its future and look forward to working with staff to build on its many successes.
Coomber is an Australian-qualified lawyer who spent five years working in human rights in New Delhi, Geneva and Cairo. She joined Interights in 2002 and has advised and co-represented applicants before the European Court of Human Rights, the African Commission on Human and Peoples Rights and UN treaty bodies.
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