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Category Archives: Transhuman News
How To Decode A Genome In Just A Single Day
Posted: March 29, 2014 at 12:43 am
Genome analysis is big business. Thanks to the human genome project, two related fields of medicine--computational biology and personalized medicine--have become part of our health care vocabulary over the past few years. Because genome sequencing requires multi-terabyte files and mind-boggling amounts of server power, it's been a boon for tech companies. One of them, Intel, announced this week that they can now analyze a genome in only one day, a 300% increase in speed from the previous three days it took for genome decoding.
Intel's new benchmark was announced in conjunction with the joint MIT-Harvard Broad Institute. In recent years, Intel has aggressively targeted customers in the health care industry (along with automotive-sector customers) in order to build alternative profit bases. Industry trends like the rise of tablets and smartphones, along with the rising enterprise use of cloud computing have hurt Intel's traditional business model; health care gives Intel a lucrative new industry to work in.
Eric Dishman, an Intel health care executive and one of Fast Company's Most Creative People, said that the work with Broad was part of a much larger effort in North America and Europe to develop a health care tech infrastructure that would take genomics to the bedside and to the clinic rather than only research hospitals. Dishman has an unusual resume for a tech executive; he was diagnosed with kidney cancer in college and credits genomics with helping to save his life. And 23 years after receiving his diagnosis, a genomic analysis led doctors to begin treating him with a drug intended for another sort of cancer. This drug treatment allowed him to become healthy enough to receive a kidney transplant.
The increase in genome processing speed comes through a new version of Broad's Genome Analysis Toolkit (GATK) running on Intel servers. According to Broad and Intel, the new benchmarks in variant discovery don't just cut analysis times from three days to one day, but can also analyze data sets with 100 times more DNA samples than previously possible. These changes are due to both the new software update and the use of instruction sets related to highly compute intensive tasks that were released in late 2013.
Other Intel partners in the genomics sphere include London's Francis Crick Institute and the Beijing Genomics Institute. Dishman added that (We work) on the technical challenges. We need to make the computer as fast as possible and then there's the storage. This is some of the biggest of big data, if you generate a file every time a patient goes to the clinic, someday that will be a huge problem. The end goal? To make the Broad's genomics programs hum like a well-tuned engine.
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How To Decode A Genome In Just A Single Day
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Living longer and better
Posted: at 12:43 am
Some people die at 60, and they bury them at 90, fitness legend Jack LaLanne said, referring to the infirmities of many elderly.
As Americans live longer, quality-of-life, not just longevity, becomes more important. Thats why San Diego geneticist J. Craig Venter and his partners founded Human Longevity Inc., to uncover genes that cause disease and illness, thus allowing people to live longer, healthier lives.
Senior health will become an even larger issue in the country than it is already, with enormous economic effects. Americans 65 and over numbered 41.4 million in 2011; theyre projected to increase to 79.7 million in 2040. The 85-and-over population is projected to increase from 5.7 million in 2011 to 14.1 million in 2040. There are 55,000 Americans over 100.
While advances in science hold incredible promise, an ancient method exists that is proven to increase longevity and quality of life: exercise.
Physical exercise is the answer to longevity, said Stanford professor Dr. Walter M. Bortz, author of Dare to be 100. Bortz turned 84 last week.
LaLanne died in 2011 at 96. He was still running his business empire of books, DVDs, juicers and a website. Thats now handled by his wife, Elaine, who at 88 exercises daily and can still do mens-style push-ups. Indeed, lets make 90 todays 60.
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Living longer and better
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Drilling into the trends in genetics and epigenetics of aging and longevity
Posted: at 12:43 am
PUBLIC RELEASE DATE:
28-Mar-2014
Contact: Andrew Thompson andrew@landesbioscience.com Landes Bioscience
Since the dawn of civilization people were searching for clues to longevity and trying to extend human lifespan. But only in the past two decades with the advances in genetic sequencing, epigenetic analysis, and increased government investments the area experienced rapid expansion in the knowledge base, allowing scientists to develop comprehensive models and theories of aging. And while there is still much disagreement among scientists, the evolutionary theories are dominating the field. These theories predicted existence of certain genes that provide selective advantage early in life with adverse effects on lifespan later in life or longevity insurance genes. Indeed, the study of human and animal genetics is gradually identifying new genes that increase lifespan when overexpressed or mutatedgerontogenes. Furthermore, genetic and epigenetic mechanisms are being identified that have positive effects on longevity.
"The study of the effects of mutations and epimutations on life expectancy and the aging rate expands the range of potential pharmacological and genoteraputic targets, as well as biomarkers of treatment of aging-dependent pathologies," said professor Alexey Moskalev, PhD, DSc, head of the laboratories for aging research at the Institute of Biology of the Russian Academy of Sciences and at the Moscow Institute of Physics and Technology.
The international group of scientists performed a comprehensive analysis of the genetic and epigenetic mechanisms and demonstrated that the majority of the genes, as well as genetic and epigenetic mechanisms that are involved in regulation of longevity, are highly interconnected and related to stress response. Also, for the first time, the group performed a comprehensive analysis of government research grants related to the genes involved in aging. One of the tools that may help understand the direction of scientific research that is still unpublished are research grant abstracts. To better understand the general trends in aging genetics, the funding and citation information for the longevity genes was collected using the International Aging Research Portfolio (IARP) system as well as the NCBI PubMed system.
Grants analysis led to interesting conclusions. The science of aging genetics is a comparatively new field. P53 was discovered in 1979 and implicated in aging in 1987. On average, genes in Table 2 were discovered 21 years ago and it took 9.7 years between the first citation and the first citation with "aging." The approximate amount of funding spent on genes related to aging is at over $8.5 billion with over 195,000 citations with the most funding spent on genes involved in stress response. On average approximately 7.4% of the funding was spent on projects with "aging" in the grant application and this was consistent across all three categories. The average amount of funding per citation was over $43,900. The largest amount of funding spent on a single gene with "aging" in the grant abstract was $195 million, which represents fewer than 5% of the total funding spent on P53 research. SIRT1 and homologs is the only gene with over $100 million spent on analyzing its role in aging with just under 14% of the funding spent on non-aging related projects. Most of the genes related to aging and longevity were associated with other biologic processes, and most of the funding and publications citing these genes is related to areas other than aging.
"While most scientists rely on published research data and scientific conferences to follow the advances their areas of research, the vast amount of knowledge is codified in the published research grant abstracts and associated metadata. A comprehensive analysis of government grants and related publications shows that aging research is an emerging field and that only a minor fraction of the research dollars spent on genes implicated in aging and longevity was actually intended for aging research," said professor Alex Zhavoronkov, PhD, director of the Biogerontology Research Foundation, UK.
The team also performed the signaling pathway analysis of the genes implicated in aging and longevity and demonstrated that that most of the gerontogenes are members of the stress response pathways that confirm the existence of genetics "longevity program." As a rule, genesregulators of longevity programsuppress mild stress response and mutations that make some of those pathways less efficient and provide life-extension benefits. Mild overexpression of effector longevity genes, involved with stress-response to DNA, protein, or other cellular damages, prolong lifespan. While moderate stress induces "longevity program" by stimulating expression of life assurance genes and promoting prevention or elimination of errors, including the novel and spontaneous ones, chronic or acute stress exposure exhausts the defense mechanisms and therefore accelerates aging. Pro-aging and anti-aging gene-determined processes exist on all levels of organismal systemfrom molecules to systems (metabolic, endocrine, immune, and inter-cellular communication). Their multi-level organization, the interpenetration of levels, a combination of regular and stochastic elements, is what makes the process of aging a fractal process.
The results of the study will be published Open Access in the prestigious peer-reviewed journal Cell Cycle, available at https://www.landesbioscience.com/journals/cc/article/28433/.
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Drilling into the trends in genetics and epigenetics of aging and longevity
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032414 Scratching the Surface of Treating Eczema – Vid – Video
Posted: at 12:43 am
032414 Scratching the Surface of Treating Eczema - Vid
Dr. Lewis First discusses how parents can determine whether their child #39;s itchy skin could be eczema.
By: WPTZ NewsChannel 5
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032414 Scratching the Surface of Treating Eczema - Vid - Video
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Children and Itchy Skin – Eczema – First With Kids – Vermont Children’s Hospital, Fletcher Allen – Video
Posted: at 12:43 am
Children and Itchy Skin - Eczema - First With Kids - Vermont Children #39;s Hospital, Fletcher Allen
Dr. Lewis First discusses how parents can determine whether their child #39;s itchy skin could be eczema. Eczema is a term that describes a skin condition in whi...
By: Fletcher Allen
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Adelaide Hypnotist clive westwood helping to beat eczema – Video
Posted: at 12:43 am
Adelaide Hypnotist clive westwood helping to beat eczema
Adelaide Hypnotist clive westwood helping to beat eczema Adelaide Hypnotist / Hypnotherapist Clive Westwood Hypnosis / Hypnotherapy How to use for best resul...
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Adelaide Hypnotist clive westwood helping to beat eczema - Video
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Tratamiento del Eczema en Polanco – Video
Posted: at 12:43 am
Tratamiento del Eczema en Polanco
Tratamiento del Eczema en Polanco: El Terapeuta Luis Antonio Pacheco nos da la Bienvenida a su canal.
By: LUIS PACHECO CUANTUM CARE
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Tratamiento del Eczema en Polanco - Video
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How To Treat Plaque Psoriasis Naturally | Plaque Psoriasis Natural Remedies | Psoriasis Diet – Video
Posted: at 12:42 am
How To Treat Plaque Psoriasis Naturally | Plaque Psoriasis Natural Remedies | Psoriasis Diet
VISIT: http://psoriasis.vital101.com How To Treat Plaque Psoriasis Naturally - Plaque Psoriasis Natural Remedies - Psoriasis Diet What is psoriasis? Ps...
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How To Treat Plaque Psoriasis Naturally | Plaque Psoriasis Natural Remedies | Psoriasis Diet - Video
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Formation Quality Care sur le Psoriasis _ SCOPH Tunis – Video
Posted: at 12:42 am
Formation Quality Care sur le Psoriasis _ SCOPH Tunis
By: Nehed Hadrich
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Formation Quality Care sur le Psoriasis _ SCOPH Tunis - Video
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New Gene 'Atlas' Maps Human DNA Activity
Posted: at 12:42 am
WEDNESDAY, March 26, 2014 (HealthDay News) -- Scientists say they've constructed an "atlas" that maps the ways human genes are turned on and off, offering potentially important new insights into health and disease.
The new atlas builds on the achievements of the Human Genome Project -- the mapping of all of the approximately 20,500 human genes, first completed in 2003. Speaking at the time of the Human Genome Project's publication, Francis Collins, director of the U.S. National Human Genome Research Institute, called it "a shop manual, with an incredibly detailed blueprint for building every human cell."
The new gene-activity map describes those networks that govern genes' activity in major cells and tissues in the human body, according to a team of 250 experts from more than 20 countries.
"Now, for the first time, we are able to pinpoint the regions of the genome that can be active in a disease and in normal activity, whether it's in a brain cell, the skin, in blood stem cells or in hair follicles," Winston Hide, an associate professor of bioinformatics and computational biology at Harvard School of Public Health, said in a Harvard news release.
"This is a major advance that will greatly increase our ability to understand the causes of disease across the body," added Hide, who was one of the authors of the main paper in the March 27 issue of Nature.
The findings from the three-year project -- called FANTOM5 -- are described in a series of papers published in Nature and 16 other journals. The project was led by the RIKEN Center for Life Science Technologies in Japan.
In their work, Hide and his colleagues mapped the activity of 224,000 switches that turn human genes on and off. The map includes switches -- which are regions of DNA that manage gene activity -- across a wide range of cell and tissue types.
"We now have the ability to narrow down the genes involved in particular diseases based on the tissue cell or organ in which they work," Hide said. "This new atlas points us to the exact locations to look for the key genetic variants that might map to a disease."
"The FANTOM5 project is a tremendous achievement. To use the analogy of an airplane, we have made a leap in understanding the function of all of the parts. And we have gone well beyond that, to understanding how they are connected and control the structures that enable flight," David Hume, director of The Roslin Institute at the University of Edinburgh, Scotland, and a lead researcher on the project, said in a university news release.
"The FANTOM5 project has identified new elements in the genome that are the targets of functional genetic variations in human populations, and also have obvious applications to other species," he added.
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New Gene 'Atlas' Maps Human DNA Activity
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