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Minecraft – Attack Of The B-Team Ep 11 – DNA Madness (B-Team Modpack) HD – Video
Posted: May 7, 2014 at 11:44 pm
Minecraft - Attack Of The B-Team Ep 11 - DNA Madness (B-Team Modpack) HD
Attack of the B-Team was designed with one thing in mind, crazy mad science! With the help of the B-Team Technic hand picked the wackiest mods they could find and shoved them all in a modpack...
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First Life with "Alien" DNA Created in Lab
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An engineered bacterium is able to copy DNA that contains unnatural genetic code
The addition of new letters to the 'alphabet of life' could enable biologists to vastly expand the range of proteins that they could synthesize. Credit: National Nanotechnology Initiative
For billions of years, the history of life has been written with just four letters A, T, C and G, the labels given to the DNA subunits contained in all organisms. That alphabet has just grown longer, researchers announce, with the creation of a living cell that has two 'foreign' DNA building blocks in its genome.
Hailed as a breakthrough by other scientists, the work is a step towards the synthesis of cells able to churn out drugs and other useful molecules. It also raises the possibility that cells could one day be engineered without any of the four DNA bases used by all organisms on Earth.
What we have now is a living cell that literally stores increased genetic information, says Floyd Romesberg, a chemical biologist at the Scripps Research Institute in La Jolla, California, who led the 15-year effort. Their research appears online today inNature.
Each strand of the DNA's double helix has a backbone of sugar molecules and, attached to it, chemical subunits known as bases. There are four different bases: adenine (A), thymine (T), cytosine (C) and guanine (G). These letters represent the code for the amino-acid building blocks that make up proteins. The bases bind the two DNA strands together, with an A always bonding to a T on the opposite strand (and vice versa), and C and G doing likewise.
Test-tube letters Scientists first questioned whether life could store information using other chemical groups in the 1960s. But it wasnt until 1989 that Steven Benner, then at the Swiss Federal Institute of Technology in Zurich, and his team coaxed modified forms of cytosine and guanine into DNA molecules. In test-tube reactions, strands made of these funny letters, as Benner calls them, copied themselves and encoded RNA and proteins.
The bases engineered by Romesbergs team are more alien, bearing little chemical resemblance to the four natural ones, Benner says. In a 2008 paper, and in follow-up experiments, the group reported efforts to pair chemicals together from a list of 60 candidates and screen the 3,600 resulting combinations. They identified a pair of bases, known as d5SICS and dNaM, that looked promising. In particular, the molecules had to be compatible with the enzymatic machinery that copies and translates DNA.
We didnt even think back then that we could move into an organism with this base pair, says Denis Malyshev, a former graduate student in Romesbergs lab who is first author of the new paper. Working with test-tube reactions, the scientists succeeded in getting their unnatural base pair to copy itself and be transcribed into RNA, which required the bases to be recognized by enzymes that had evolved to use A, T, C and G.
The first challenge to creating this alien life was to get cells to accept the foreign bases needed to maintain the molecule in DNA through repeated rounds of cell division, during which DNA is copied. The team engineered the bacteriumEscherichia colito express a gene from a diatom a single-celled alga encoding a protein that allowed the molecules to pass through the bacterium's membrane.
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Biologists Create Cells With 6 DNA Letters, Instead of Just 4
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Cells with an expanded genetic alphabet could potentially make a wider range of proteins. Image: Synthorx
One of the first things you learn in Biology 101 is that the genetic code consists of four letters: A, T, C, and G. Each represents a chemical building block of DNA, the molecule that encodes the information necessary to build life as we know it. But what if we didnt have to settle for just four letters? Now, scientists have accomplished something once thought impossible: Theyve created cells with an expanded genetic alphabet that includes two more letters.
We now have a cell that survives and lives with more information in its genome, said Floyd Romesberg, the synthetic biologist at the Scripps Research Institute in La Jolla, California who led the work.
Having more letters to work with potentially opens the door to a huge range of novel molecules. (A rough analogy: Just think how many crazy new words you could spell with 39 letters instead of the usual 26). With further refinements, synthetic cells might one day be used to createor evolveproteins that dont exist in nature, as well as new sequences of DNA and RNA, any of which could be useful for research, diagnosing disease, or creating new therapies. But thats still a ways off.
Romesberg says his lab spent 15 years developingDNA with two extra letters. In chemical terms, the letters are nucleotides, the components of DNA whose sequences spell out instructions for making proteins. Cells, you may remember, make proteins by transcribing DNA into RNA and using the RNA as a template to string together amino acids into proteins. Cells also have to copy their DNA each time they divide to make more cells. The biggest challenge, Romesberg says, was making sure the two new nucleotides played nice with the enzymes that do all this copying and transcribing.
In 2012, the scientists reported a breakthrough: They showed that six-letter DNA theyd created could be successfully copied and transcribed into RNA in test tube experiments.
In a new study, scientists put six-letter DNA into E. coli bacteria. Image: Database Center for Life Science (DBCLS)
But could six-letter DNA actually function in the far more complex and chaotic environment of a living cell?
The new study suggests it can. Romesberg and colleagues managed to coax E. coli bacteria into taking up their six-letter DNA and making copies of it. The cells enzymes copied the two new letters, which the scientists call X and Y for short (not to be confused with the X and Y chromosomes that differentiate boys from girls), along with the usual four. The cells grew a little more slowly than normal, but otherwise seemed no worse for wear, the team reports today in Nature.
The work is a major accomplishment, says Steven Benner, a synthetic biologist at the Foundation for Applied Molecular Evolution in Gainesville, Florida. He says its the first time anyone has shown that living cells can replicate alien DNA built from parts other than the four letters that occur in nature.
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Biologists Create Cells With 6 DNA Letters, Instead of Just 4
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DNA match leads to arrest, major haul of suspected stolen items
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LEBANON, OR (KPTV) -
DNA evidence led to an arrest and a major haul of suspected stolen goods nearly a year after a burglary was first reported in Lebanon.
Deputies were called out to a home on Stoltz Hill Road on May 9, 2013. The caller reported that their neighbors were out of state and someone had broken into their home.
When the victims returned home, it was determined that more than $67,000 worth of property had been stolen, including 10 guns, an ATV, a large coin collection, U.S. savings bonds, jewelry, home electronics, chainsaws, hunting equipment and tools.
Deputies seized evidence and sent it to the Oregon State Police Crime Laboratory to be checked for possible DNA.
The crime lab reported finding DNA on the evidence but found no match in the database. The DNA profile was stored in the state and national DNA databases and periodically searched as new samples came in.
On April 29, 2014, a match was found, linking the DNA evidence to William Driskill, 35, of Lebanon.
On Tuesday, a search warrant was served at his home on the 600 block of E Street. Deputies said they recovered a gun and coins believed to be from the May 2013 case.
In addition, deputies said they found plenty of other suspected stolen items, including antiques, a specialized competition mountain bike, a car dolly and construction tools like concrete saws, air compressors and a cutting torch.
Metal believed to be stolen was also found on the property, including titanium, industrial stainless steel pipe and burnt copper wire.
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Mapping the spider genome: Surprising similarities to humans
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The fact that the eight-legged creepy spider in some ways resembles humans is one of the surprising conclusions after researchers at Aarhus University and the Beijing Genomics Institute (BGI) succeeded in sequencing its genome.
However, it is more a discovery on an awesome scale. The sequencing has far greater significance for our future understanding of the spider's special properties.
"In brief, we've acquired a tool for everyone interested in spiders," say Kristian W. Sanggaard and Jesper S. Bechsgaard, Aarhus University. Together with Xiaodong Fang, BGI, they are the first authors of the study, which has been published in Nature Communications. By describing the spider genome, the researchers have roughly speaking drawn up its genetic map. This map can be used in future to navigate to and delve into different areas of the spider's functions -- which will now be easier to describe.
What is a spider?
The researchers worked with two types of spiders, representing two of the three main groups in the spider family. One of these is a small velvet spider and the other is a tarantula.
The researchers succeeded in sequencing the velvet spider's genome, while there are still some unsolved gaps in the genetic map of the tarantula.
"The idea was that, by comparing their genetic makeup, we'd try to see whether we could say anything in general terms about what makes a spider a spider," says Kristian W. Sanggaard. However, it is almost 300 million years since the two types of spiders had a common ancestor, so the researchers could only find a limited number of similarities. "But we found a number of genes -- about two to three hundred -- that have only been found in these two types of spiders and not in other organisms. They could be candidates for genes specific to spiders," says Jesper S. Bechsgaard.
From overview to insight
The researchers were not content with simply mapping the spider genome. They also looked at the protein composition of two of the most interesting areas of the 'crawly cousins' -- silk and venom production. By including the proteins, they did not restrict themselves to providing a map, but they also filled in details on two specific points. James Watson, who was awarded a Nobel Prize for describing the structure of the DNA strand, called genes the 'script' and proteins the 'actors'. By describing the proteins, the researchers thus demonstrated so to speak that their script works. Or -- to keep to the map analogy -- that the genetic map actually leads in the right direction. This is one of the only studies in which the proteins are described along with the genome. This was possible because the Aarhus researchers have some of the most advanced mass spectrometry equipment in the world for sequencing large numbers of proteins.
We can learn from spiders
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3D shape of genome could diagnose leukaemia type
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When someone has leukaemia, differences in how their genome is folded up into the nucleus of their cells can reveal what form of the cancer they have. The finding the first time that the 3D structure of a cell's genome has accurately identified human disease could lead to a better way to predict the course of the disease.
A human genome, with its DNA stretched out, is over a metre long. To fit into the nucleus of a cell, it is crumpled into a little ball held together by proteins. That complex is called chromatin.
The 3D structure of the DNA in each cell affects which genes it uses, or expresses. In some cases, the precise shape of the DNA can have specific effects. For example, if a bit of DNA code that normally controls how strongly nearby genes are expressed is folded over and touches another gene, it can switch that gene on or off even if it's on a completely different chromosome.
Since one of the hallmarks of leukaemia is gene over-expression, Jose Dostie at McGill University in Montral, Canada, and her colleagues wondered whether that was associated with changes in the chromatin shape.
To investigate, the team examined data from 30 DNA samples of cells grown in a lab. These cells originally came from people with three different subtypes of the cancer acute myeloid leukaemia, acute lymphoblastic leukaemia and embryonic carcinoma.
They focused on a particular region of the genome where a set of genes called HOXA are found. These are associated with many cancers, including leukaemia. The team identified the points of contact between the parts of the genome in this region of the chromatin complex and fed these data into a computer model. The model then predicted the chromatin shapes that the three different types of leukaemia would form.
With their model duly trained using known leukaemia samples, the team then tested their system's predictive power. They did this by providing it with data on an unknown set of leukaemia cells, all of which had one of the three leukaemia subtypes. They found that the model could identify the subtype with 93 per cent accuracy.
Finding the leukaemia subtype is the most important factor in defining treatment course, says Dostie. The standard way of diagnosing subtype involves several different clinical and histological tests. The overall level of accuracy is on a par with Dostie's results, but it requires the expertise of several different laboratories, which is not always available.
John Rasko from the University of Sydney in Australia says the method is a long way from being something that could be used to treat patients, but he says it's an exciting research tool. "It has the possibility of shedding light on mechanisms that cause or sustain cancer, and therefore may provide us with new opportunities to develop therapeutics aimed at the 3D structure of DNA," he says.
Musa Mhlanga from the Council for Scientific and Industrial Research in Pretoria, South Africa, says that if the method is verified, the practical challenge to using the technique to help patients will be doing the analysis with small samples. "The big caveat here is that to do these chromatin-confirmation studies at high resolution you need millions of cells. You can't get this from a tumour biopsy."
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Statistical Test Increases Power of Genetic Studies of Complex Disease
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Newswise The power of genome-wide association studies (GWAS) to detect genetic influences on human disease can be substantially increased using a statistical testing framework reported in the May issue of the journal GENETICS.
Despite the proliferation of GWAS, the associations found so far have largely failed to account for the known effects of genes on complex disease the problem of missing heritability. Standard approaches also struggle to find combinations of multiple genes that affect disease risk in complex ways (known as genetic interactions).
The new framework enhances the ability to detect genetic associations and interactions by taking advantage of data from other genomic studies of the same population. Such information is increasingly abundant for many human populations.
The authors demonstrated that their method improves performance over standard approaches. They also re-examined real GWAS data to find promising new candidates for genetic interactions that affect bipolar disorder, coronary artery disease, Crohns disease, and rheumatoid arthritis.
We think practically everyone whos ever done a case-control GWAS could benefit from reanalyzing their data in this way, said author Saharon Rosset, associate professor of statistics at Tel Aviv University.
This paper offers a significant advance in mapping genes involved in disease. The approach makes use of available data to substantially improve the ability to identify genetic components of disease, said Mark Johnston, Editor-in-Chief of the journal GENETICS.
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CITATION: S. Kaufman and S. Rosset. Exploiting Population Samples to Enhance Genome-Wide Association Studies of Disease. Genetics May 2014 197:337-349 doi: 10.1534/genetics.114.162511 Available online at: http://www.genetics.org/content/197/1/337
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Eczema Treatment – How to Moisturize Properly – Video
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Eczema Treatment - How to Moisturize Properly
http://www.VanishEczema.net Eczema is an inflammatory disease of the skin that affects a lot of person worldwide. Everyone can be affect by eczema. Eczema ca...
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How to Treat and Remove the Cause of Eczema – Video
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How to Treat and Remove the Cause of Eczema
FULL ECZEMA INFO AT: http://www.VanishEczema.net What is eczema? Eczema, also known as atopic dermatitis, is a chronic allergic condition in which the skin develops areas of itchy, scaly rashes....
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How To Get Rid Of Eczema On The Face Without Steriods or Harsh Medications – Video
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How To Get Rid Of Eczema On The Face Without Steriods or Harsh Medications
FULL ECZEMA INFO AT: http://www.VanishEczema.net What is eczema? Eczema, also known as atopic dermatitis, is a chronic allergic condition in which the skin d...
By: Alexander Hurben
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How To Get Rid Of Eczema On The Face Without Steriods or Harsh Medications - Video
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