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Category Archives: Transhuman News

Why DNA could be the future of data storage

Posted: February 26, 2015 at 11:43 am

Story highlights Science is now looking to nature to find the best way to store data in a way that will make it last for millennia Just one gram of DNA is theoretically capable of containing all the data of internet giants such as Google and Facebook Researchers in Zurich wanted to find ways to combine the storage capacity of DNA with the stability of the DNA found in fossils The Zurich team say their process could make the data encoded in DNA readable in 10,000 years' time or even longer

Already a storage company called Backblaze is running 25,000 hard drives simultaneously to get to the bottom of the question. As each hard drive coughs its last, the company replaces it and logs its lifespan.

While this census has only been running five years, the statistics show a 22% attrition rate over four years.

Some may last longer than a decade, the company says, others may last little more than a year; but the short answer is that storage devices don't last forever.

Science is now looking to nature, however, to find the best way to store data in a way that will make it last for millions of years.

Researchers at ETH Zurich, in Switzerland, believe the answer may lie in the data storage system that exists in every living cell: DNA.

So compact and complex are its strands that just 1 gram of DNA is theoretically capable of containing all the data of internet giants such as Google and Facebook, with room to spare.

In data storage terms, that gram would be capable of holding 455 exabytes, where one exabyte is equivalent to a billion gigabytes.

Fossilization has been known to preserve DNA in strands long enough to gain an animal's entire genome -- the complete set of genes present in a cell or organism.

So far, scientists have extracted and sequenced the genome of a 110,000-year-old polar bear and more recently a 700,000-year-old horse.

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Osu! – Tsunamaru – Daidai Genome [Insane] w/ DT – 211pp – Video

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Osu! - Tsunamaru - Daidai Genome [Insane] w/ DT - 211pp
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Osu! - Tsunamaru - Daidai Genome [Insane] w/ DT - 211pp - Video

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The real genome project needs countries to share information

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Prof Eric Lander has trained his focus on identifying disease genes

Chennai, February 25:

Eric S Lander, one of the principal leaders of the Human Genome Project, a massive international research exercise that mapped the entire human genetic code in 2003, said on Wednesday that the real genome project is about studying huge samples of genomic data to identify disease genes.

While phenomenal technological advances have helped reduce the cost of genome sequencing by a million-fold over the last decade, allowing researchers to map thousands of human genomes, the future of genomic medicine depends on sharing information between organisations and countries including India said Prof Lander. In order for therapy to emerge from genetic research, health systems around the world need to turn into learning systems that share information, said Lander, delivering a lecture on The Human Genome and Beyond: A 35 year Journey of Genomic Medicine as part of the three-city Cell Press-TNQ Distinguished Lectureship Series.

Lander envisaged a DNA library where genes can be cross-reference to detect spelling differences and disease genes. The goal before the scientific community now is to find targets for therapeutic intervention, he said to a packed auditorium comprising medical students. There is much to be learnt in the course of clinical care, said Lander who is the founding director of the Broad Institute of MIT and Harvard.

While the breathless hype created around the Human Genome Project suggested that it would cure all disease in a couple of years, he said that much progress has indeed been made over the last decade with the discovery of several genes responsible for diabetes, schizophrenia and heart attacks.

Lander will be speaking next on Friday at JN Tata Auditorium in Bengaluru as part of the lectureship series.

(This article was published on February 25, 2015)

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How the landscape of the pancreatic cancer genome is coming into view

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IMAGE:This is professor Andrew Biankin. view more

Credit: Garvan Institute of Medical Research

Scientists from Australia and the UK have done the most in-depth analysis yet of 100 pancreatic cancer genomes and highlighted 4 subtypes that may help guide future patient treatment. The study is published in Nature today.

Using whole genome sequencing, the team revealed broad patterns of 'structural variation', or change, previously invisible when it was feasible to sequence only protein-coding genes (around 1% of the genome).

Just as satellite images allow us to see the Earth as a whole, and zoom into the detail when we choose, whole genome sequencing allows us to view global and local DNA damage equally effectively.

Like landmasses or ice shelves, entire chromosomes can shatter and rearrange themselves. Slabs of DNA can break away from one chromosome and join another. Genes can be inverted, deleted or multiplied.

With the benefit of a global view, four kinds of genomic rearrangement were detected in the new study, including 'stable', 'locally rearranged', 'scattered' and 'unstable'. In some cases - notably 'unstable' genomes, which show defective DNA repair mechanisms - effective treatments suggested themselves.

Professors Andrew Biankin and Sean Grimmond, laboratory heads at Sydney's Garvan Institute of Medical Research and the University of Queensland's Institute for Molecular Bioscience (IMB) respectively, led the study, arising out of a much larger ongoing project. Both are now based at the Wolfson Wohl Cancer Research Centre, part of the University of Glasgow in Scotland. They collaborated with bioinformatician Dr Nicola Waddell from IMB, who interpreted the sequencing results.

A prior study by the same group, which examined only the 'exomes' - protein-coding genes - within the same cohort of 100 patients, showed a complex mutational landscape, as well as enormous heterogeneity among the tumours. Thousands of mutated genes were present, and "a long tail of infrequently mutated genes dominated", said Professor Biankin.

"The bottom line is that we really have to start thinking about moving to whole genome sequencing as a diagnostic imperative.

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How the landscape of the pancreatic cancer genome is coming into view

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Team approach boosts human and environmental wellbeing

Posted: at 11:43 am

Even seemingly intractable problems such as the antibiotic crisis and the obesity epidemic could be resolved by treating human health and society as an integral part of an ecosystem.

Renowned health and nutrition expert Professor Mark Wahlqvist of Monash University said the living world was by nature a collaborative enterprise rather than a competitive one.

"It is unhelpful to look at ourselves as discrete species as the interconnectedness of all things, animate and inanimate, becomes more apparent," he said.

In research published in the Asia Pacific Journal of Clinical Nutrition, Professor Wahlqvist says awareness is growing of the ecosystem-dependent nature of human health.

"The problem now faced is that ecosystems have been plundered in such an anthropocentric fashion that their sustainability is precarious and our health with it," he said.

Calling for a re-evaluation of many ecosystems, from the home, school and work-place to health care, communication, transport and recreation, Professor Wahlqvist said we had become accustomed to blaming disease and dysfunction on one factor, or a small set of factors.

Such views had contributed to the rise of medications such as antibiotics, as well as their probable imminent demise.

"We confront multiple-resistant microorganisms in farm animals and ourselves that no currently available antibiotic can eradicate, not least because of their misuse as growth promotants in livestock for human consumption," he said.

"Better ecosystem management is likely to be one of the few solutions available to this crisis."

Professor Wahlqvist also said more integrative approaches to health-care practice were required.

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Team approach boosts human and environmental wellbeing

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Local Woman Invents Useful Tool For Weaves And Extensions

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NOW AVAILABLE: New FOX 29 News, Weather Apps NOW AVAILABLE: New FOX 29 News, Weather Apps

Updated: Wednesday, February 4 2015 11:31 AM EST2015-02-04 16:31:54 GMT

FOX 29 News has two new FREE apps to help you stay in the know when you're on the go! Click inside this story to find out how easy they are to get.

FOX 29 News has two new FREE apps to help you stay in the know when you're on the go! Click inside this story to find out how easy they are to get.

Updated: Thursday, February 26 2015 10:17 AM EST2015-02-26 15:17:58 GMT

It's one big industry, that's raking-in hundreds of millions of dollars.It all centers on hair, as in weaves and extensions, and African American women make-up a substantial portion of those paying big bucks.Fox 29's Joyce Evans introduced us to a local woman, who invented a tool she says can save you money, time, and your natural hair.

It's one big industry, that's raking-in hundreds of millions of dollars.It all centers on hair, as in weaves and extensions, and African American women make-up a substantial portion of those paying big bucks.Fox 29's Joyce Evans introduced us to a local woman, who invented a tool she says can save you money, time, and your natural hair.

Updated: Thursday, February 26 2015 8:09 AM EST2015-02-26 13:09:37 GMT

A southern system could produce snowfall in our southern zones during the Thursday morning commute. Some of that snow could make it into the city. Highs will be back in the upper 20s.

A southern system could produce snowfall in our southern zones during the Thursday morning commute. Some of that snow could make it into the city. Highs will be back in the upper 20s.

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Marshaling the body's own weapons against psoriasis

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This news release is available in German.

A three-character code brings relief to patients with psoriasis and sheds light on complex immunoregulation processes: IL-4, an abbreviation for the endogenous signaling molecule Interleukin 4. The substance's ability to inhibit inflammation is well known, but its mechanism of action was not fully understood. Scientists from the Technische Universitt Mnchen (TUM) and the University of Tbingen have now shown in an animal model and in a study on patients exactly how IL-4 helps against psoriasis at the molecular level and the important role it plays in our immune system.

Inflammation is a defense strategy of the body against invaders. Increased amounts of blood and fluid flow into the infected areas, and the release of signaling molecules summon immune cells to the site of infection to effectively neutralize the pathogens. However, poorly coordinated or misdirected immune reactions can trigger inflammation even in the absence of external agents, thus causing undue tissue damage. This is the case in psoriasis and other autoimmune diseases, such as multiple sclerosis and rheumatoid arthritis.

The body's own signaling molecule as a therapy candidate

"Together with colleagues from Tbingen, we were able to show in earlier studies that the signaling molecule IL-4 is a promising candidate for the treatment of psoriasis," explains Prof. Tilo Biedermann, who holds the chair for Dermatology and Allergology and is Director of the Clinic and Polyclinic for Dermatology and Allergology. "However, before IL-4 can be used as a standardized medication, we have to understand the exact mechanism of action - and we've now succeeded in doing just that."

The scientists followed a translational approach in their study - the laboratory findings were applied to patients without delay. They first used human and mouse cells to unravel the molecular effects of IL-4 on inflammation. To this effect, the scientists discovered that IL-4 inhibits specific immune cells in a natural way: it prevents the cells from synthesizing and releasing two signaling molecules, known as IL-23 and IL-17.

"The discovery is very interesting in that IL-23 activates special T-cells in the body, thus triggering inflammation. Evidently IL-4 is able to effectively block this pathway," says Biedermann. In subsequent experiments with mice, the scientists also found that administration of IL-4 specifically inhibits inflammation of the skin via this mechanism.

IL-4 reduces psoriasis in patients

The scientists also checked the findings from the animal model in a patient study. Twenty-two patients with psoriasis received subcutaneous injections of IL-4 over a period of six weeks. Tilo Biedermann and his colleagues then examined samples from the patients' affected skin areas before and after the treatment.

The results confirmed the previous experiments: Before treatment with IL-4, the study participants had high levels of IL-23 and IL-17 in their inflamed and itchy skin. After successful treatment, the two substances were barely detectable. The result was that inflammation and psoriatic skin changes had disappeared.

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First independent U.S. psoriasis registry will track drug safety and effectiveness

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PORTLAND, Ore., Feb. 26, 2015 /PRNewswire-USNewswire/ -- People with psoriasis and their health care providers will have the opportunity to participate in research that aims to improve treatments and disease outcomes when the first independent U.S. psoriasis registry begins recruiting patients in 2015.

The registry, a joint collaboration with the National Psoriasis Foundation and Corrona, LLC, will initially track the drug safety reporting for secukinumab, a new biologic medication by Novartis Pharmaceuticals for moderate-to-severe psoriasis. The Corrona Psoriasis Registry will enroll at least 3,000 people with psoriasis on secukinumab and follow their treatment for at least eight years. Novartis is the first subscriber to the registry and did incur a subscriber fee.

To become an investigator in the registry or learn more about it, visit http://www.psoriasis.org/corrona-registry.

By collecting and analyzing data from thousands of people with psoriasis over many years, the registry will help clinicians, researchers and the pharmaceutical industry compare the effectiveness and safety of different psoriasis treatments. Data will be gathered through comprehensive questionnaires completed by patients and their dermatologists during appointments.

"Psoriasis therapies have improved greatly over the years, yet there still remains an important need for us to understand more about their long-term safety and the course of disease over a patient's lifetime," said Dr. BruceStrober, vice chair of UConn Health's department of dermatology and scientific director for the registry. "This registry will help determine which treatments are safest and most effective for psoriasis in the long term."

In addition to studying treatment safety and effectiveness, the registry will help identify possible causes of psoriasis, examine the relationship between psoriasis and other health conditions, and study the impact of the disease on quality of life, among other outcomes.

"Post approval studies such as the Corrona Psoriasis Registry that collect standardized data on newly approved therapies and comparator drugs are needed to provide patients and clinicians, as well as regulators and payors, with real world evidence on long-term comparative effectiveness and safety," said Dr. Jeff Greenberg, chief scientific officer with Corrona and clinical associate professor of medicine at NYU School of Medicine.

Psoriasisa painful, chronic, genetic disease that causes the skin to crack, itch and bleedis the most common autoimmune disease in the country, affecting up to 7.5 million Americans. People with psoriasis are at increased risk for heart disease, heart attack, stroke, diabetes, obesity and depression. Up to 30 percent of psoriasis patients develop psoriatic arthritis, an inflammatory joint and tendon disease.

Learn more about the psoriasis registry and how you can participate at http://www.psoriasis.org/corrona-registry.

About the National Psoriasis FoundationNational Psoriasis Foundation (NPF) is the world's largest nonprofit serving those with psoriasis and psoriatic arthritis. Our priority is to provide the services people need to take control of their condition, while increasing research to find a cure. In addition to serving more than 2.1 million people annually through our education and advocacy initiatives, NPF has funded more than $10 million in psoriatic disease research grants and fellowships. Learn more at http://www.psoriasis.org or call 800.723.9166. Follow us on Facebook and Twitter.

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IU researchers identify pancreatic cancer patients who benefit from personalized treatment

Posted: at 11:42 am

INDIANAPOLIS - Cancer researchers at Indiana University report that about 15 percent of people with pancreatic cancer may benefit from therapy targeting a newly identified gene signature.

Using data from the Cancer Genome Atlas, Murray Korc, M.D., the Myles Brand Professor of Cancer Research at the Indiana University School of Medicine and a researcher at the Indiana University Melvin and Bren Simon Cancer Center, and colleagues found that a sub-group of pancreatic cancer patients who possess a strong angiogenic gene signature could benefit from personalized therapies that cut off the pathways that feed the cancer's growth.

This particular gene signature enables abnormal blood vessels to form in tumors, which feeds the tumor's growth.

The finding, published online Feb. 25 in the journal Oncotarget, is new because the prevalence of this signature was not previously known. The authors also demonstrated for the first time that endothelial cells, the main type of cell found in the inside lining of blood vessels, can produce molecules that directly stimulate the growth of pancreatic cancer cells.

"We showed that endothelial cells can stimulate the growth of pancreatic cancer cells and that by silencing or inhibiting certain pathways - JAK1-2 and STAT3 - we can alter that effect," Dr. Korc explained. "We demonstrated that it is possible to target these pathways and prolong the survival of genetically modified mice whose pancreatic cancers also have a strong pro-angiogenic gene signature."

Thus, for people with a strong pro-angiogenic gene signature, the finding suggests that they may benefit from targeted therapy that is directed against one of these pathways.

An important feature of the study was to demonstrate that it is possible to implant in mice small biopsy samples obtained from patients undergoing endoscopic procedures and to generate human tumors in these mice. When the original human tumor had evidence for angiogenesis, the implanted human tumor also exhibited angiogenesis in the mouse. Additional studies are necessary to confirm that these approaches could guide the design of precision medicine using targeted therapies, Dr. Korc said.

The need for new therapies for pancreatic cancer patients is great as only 7 percent of people with the disease survive more than five years after diagnosis. According to the American Cancer Society, there will be an estimated 48,960 new cases of pancreatic cancer and 40,560 deaths from the disease in 2015.

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Co-authors of the study were Jesse Gore, Ph.D.; Stuart Sherman, M.D.; Harvey Cramer, M.D.; Hai Nguyen, M.D.; Kelly Craven, Monica Cheng, and Julie Wilson, all of IU School of Medicine, and Gregory Cote M.D. M.S., formerly of IU School of Medicine and now at the Medical University of South Carolina.

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