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Demonstrators occupy French space station in Guiana – Channel NewsAsia
Posted: April 5, 2017 at 4:26 pm
KOUROU: Around 30 protest leaders in French Guiana attempted to occupy a rocket-launching space centre on Tuesday (Apr 4) as part of demonstrations that have crippled the territory in South America for 10 days.
Workers have launched protests and strikes demanding pay raises and improved public safety, creating a fresh crisis in the last few weeks of outgoing president Francois Hollande's unpopular term in office.
Labour leaders rejected a government offer of a billion-dollar aid package on Monday and are demanding US$2.5 billion instead for a "Marshall Plan" to develop the often overlooked overseas territory.
After visiting the world-renowned French space centre in Kourou on Tuesday to meet its director, about 30 leaders said they would not leave until the government met their demands.
"We won't move. The situation is stuck and Guiana is blocked. You are blocked. We want the billions we have asked for," protest leader Manuel Jean-Baptiste told the director of the space centre.
The Kourou centre has become a symbol of economic disparity in Guiana, a heavily-forested landmass wedged between Suriname and Brazil on the northeastern shoulder of Latin America.
On Mar 20, angry residents blocked the planned launch of a rocket that was to place into orbit satellites for Brazilian and South Korean operators, in one of the first signs of public anger there.
Rundown homes and potholed streets ring the Kourou centre - and these are for the relatively lucky few in a territory where many of the 244,000-strong population live without electricity or running water.
"Kourou is a political, technological and financial success. It is the flagship of European technology," Youri Antoinette, an engineer at the space centre and spokesman for the residents of Kourou, told AFP.
"But once you leave the space centre, you're in an under-developed country."
The unemployment rate in Guiana is 23 per cent - and nearly twice this for 18-25-year-olds - while per capita income is about half of the rate in mainland France.
Guiana has been administered as a French region since the end of 18th century and it was also used as a place to send convicts for forced labour between 1852 and 1946.
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Meet America’s next astronaut: From F-15 combat to the International Space Station – AirForceTimes.com
Posted: at 4:26 pm
During his more than two decades in the Air Force, Col. Jack Fischer has gone from the classrooms of the Air Force Academy to the skies above Iraq and Afghanistan in an F-15 and to the cockpit of an F-22 as a test pilot.
But Fischer's next move will take him farther than he's ever been before: Outer space.
Fischer will become America's newest astronaut on April 20, when he blasts off in a Soyuz spacecraft from the Baikonur Cosmodrome in Kazakhstan, bound for the International Space Station. Fischer will spend at least four and a half months maybe as long as 6 months helping conduct some 300 experiments on everything from new technologies for exploration to creating lighter and stronger alloys to new medicines.
In interviews with reporters on Tuesday, Fischer speaking from Russia's Star City near Moscow, where he was undergoing his final training said he's "unbelievably excited" and that this journey will allow him to achieve the dream he's had since he was young.
"The first time I went for a jet ride or the first time I flew in the Raptor, you knew it was going to be awesome, but you didn't know it was going to be that awesome," he said. "I think [the blastoff] here in a couple of weeks is going to be an amazing experience that I can't even comprehend at this point. I can't wait to, once the final [rocket] stages kick off and we're actually floating in orbit, to look out the window and see the Earth in its entirety without borders, without boundaries."
Fischer said his grandfather used to work at the Johnson Space Center in Houston, Texas, and he got to visit the facility when he was six years old. He said he was awestruck at the massive Saturn V rocket laying on its side there.
"I just walked up to it and thought it was the coolest thing that I had ever seen," Fischer said.
Then-Maj. Jack Fischer poses in front of an F-22A Raptor at Edwards Air Force Base, Calif. Fischer, a 1996 Air Force Academy graduate, was one of nine new astronauts selected for NASA's 2009 astronaut candidate class. Photo Credit: Air Force Fischer, of Louisville, Colorado, graduated from the academy in 1996 with a degree in astronautical engineering and got a master's degree in aeronautics and astronautics at MIT two years later. He learned to fly F-15E Strike Eagles at Seymour Johnson Air Force Base in North Carolina, flew two combat tours in Afghanistan and Iraq, and attended Test Pilot School at Edwards Air Force Base in California. He tested weapons at Eglin Air Force Base in Florida before returning to Edwards in 2006 to test the F-22 Raptor.
Fischer was selected for NASA's 20th astronaut class in 2009 and finished two years later.
There is a chance Fischer will be able to make a spacewalk to work on the space station's exterior, which has him "super-excited."
"The only thing between you and space is a little suit," Fischer said when describing his enthusiasm for the possible spacewalk.
Fischer said that freed from gravity, the space station crew will be able to conduct experiments with the potential to help many people. For example, the station will work on a substance that can act as synthetic bone, which could potentially help trauma victims and the military.
"Without the constraints of gravity and convection and sedimentation, we're able to do some pretty cool things with alloys as well as crystals and proteins," Fischer said. "They can form perfectly, which allows us to look at new ways to study the human body, to look at immune system effects, to look for new drugs."
He described one device that he trained on in Japan that melted pellets of various substances with lasers and then rapidly cooled them to make new materials as "one of the coolest experiments that we have on the station."
Fischer said his test pilot training taught him to pay attention to even the smallest details, which will help him observe tiny, unexpected developments as the experiments progress.
Training for his first space mission includes lessons as varied as how to put on a space suit to how to fix a wall in space, Fischer said. And it can be tricky especially since everything has to be done in Russian.
"If you're not good with languages, it's a bugger," Fischer said. "Russian is a tough language, so I've had my hands full. But the people here, the culture, the community, our office and our support system is second to none. Obviously the instructors are top notch. We work together well as a community, so it hasn't been that bad."
Expedition 51 crew members Fyodor Yurchikhin of the Russian Federal Space Agency, left, and U.S. Air Force Col. Jack Fischer of NASA, right, pose for pictures in front of a Soyuz spacecraft mockup March 31 during final qualification exams at the Gagarin Cosmonaut Training Center in Star City, Russia. The men will launch April 20 on the Soyuz MS-04 spacecraft from the Baikonur Cosmodrome in Kazakhstan for a four and a half month mission on the International Space Station. Photo Credit: Rob Navias/NASA Fischer has been working side-by-side with cosmonaut Fyodor Yurchikhin, who will fly with him in the Soyuz, for much of the last three years. The two now know each other so well, Fischer jokingly compared them to an "old married couple."
"I can look over and understand, from a grunt or a motion that he makes with his shoulders, what he's thinking and what he wants me to do," Fischer said. "I think we've gotten to be a pretty darn good team."
Fischer and Yurchikhin are scheduled to fly down to Baikonur on Wednesday morning, where they will be quarantined for about two weeks before the launch and conduct final pre-launch training. That two-week stretch will be "pretty laid back" compared to the intense training he's undergone so far, he said.
Having deployed for the Air Force several times in the past, Fischer is used to saying goodbye to his family for months on end. But due to the quarantine this time, saying goodbye behind glass will be unusual, he said and a little more dramatic with the rocket launch.
"It's a little tougher for the family," Fischer said. "You make sure that you don't have anything left unsaid."
Looking to the future, Fischer said he'd like to see America build the technologies and infrastructure necessary to get humans to Mars. But, he said, if the administration decides "a pit stop to the Moon" is needed to perfect the technology, that could be a good step on the path towards Mars. And, in a few years, he would love to return to space in NASA's new Orion spacecraft.
When asked if he thought humans would ever make contact with extraterrestrials, Fischer said, "I sure hope they do! That's why we explore, is to find them. Someday, I sure hope we meet them."
Perhaps not surprisingly for an Air Force test pilot-turned-astronaut, Fischer's favorite space movie is "The Right Stuff," which tells the story of the beginnings of the space program and the original Mercury 7 astronauts.
Fischer said astronauts and cosmonauts on the space station relax by watching movies and having long conversations about their families or other subjects over dinner.
But perhaps their favorite pastime is taking advantage of the amazing view and taking as many photographs as they can, he said.
"It is such a unique perspective, that we do our very best to capture that perspective and share it with the world," Fischer said. "You have realize that spaceflight is a gift, and you have to make the most of it."
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‘Planetbase’: Possibly experiencing colonizing Mars – St. George Daily Spectrum
Posted: at 4:25 pm
Nathan Snow, For Where It's @ 4:49 p.m. MT April 4, 2017
Highly addicting and undeniably fun, this base-builder will have you happily (or madly) clicking away for hours on end as you outwit the elements. Available on Mac or PC for $19.99.(Photo: submitted)
You could easily make the case that survival is its own genre. From literature like Jack Londons To Build a Fire, movies like The Martian, and video games like Ark, there is something special about pitting your wits against the harsh, simulated elements and coming off conqueror. That is not to say that the genre, at least as it exists in video games, is not without its flaws. Survival games have often fallen prey to hours upon hours of endless grinding or collecting copious amounts of resources to build a single survival tool. Thats why its so refreshing to see a game break the mold.
Highly addicting and undeniably fun, this base-builder will have you happily (or madly) clicking away for hours on end as you outwit the elements. Available on Mac or PC for $19.99.(Photo: submitted)
Planetbase is a combination base-building and survival game. You play as the commander/architect/city planner/interior designer of a extraterrestrial colony of people. Your colonization ship lands on the alien planet and you are faced with the extreme task of building a base and beating the odds. You are given a handful of colonists with varying specialities and a small robot to start off with. Planetbase happens in real time, so from the very first moment the game keeps you busy building oxygen generators, sleeping quarters, cafeterias, factories and other elements to not only survive, but thrive. The end goal of what you are building is a completely self-sustaining human ecosystem: one wherein food, supplies, medicine and amenities are perfectly balanced. Achieving this balance is difficult enough given the limited resources you have at the beginning of the game, and it is even further complicated by the arrival of new colonists and unexpected meteor hits that throw your system out of whack.
Highly addicting and undeniably fun, this base-builder will have you happily (or madly) clicking away for hours on end as you outwit the elements. Available on Mac or PC for $19.99.(Photo: submitted)
Admittedly it took me about four tries before I got the hang of it. On the first attempt all of my colonists asphyxiated. The second: starvation. You get the picture. But, when I finally got past those all important first ten minutes or so and had a self-sustaining colony thats when the real fun began. When you begin building bigger and better structures and upgrading your colony the games structure brings you into a wonderful situation wherein you challenge yourself to expand. Expansion brings challenges, and meeting these constitutes the bulk of the game and were most of the excitement generates. The best moments in the game happen when, after a particularly intense few minutes after you have made a major change to your colony, you start to notice your settlement reach equilibrium again, and you can move on to the next challenge and create the perfect extraterrestrial community.
Highly addicting and undeniably fun, this base-builder will have you happily (or madly) clicking away for hours on end as you outwit the elements. Available on Mac or PC for $19.99.(Photo: submitted)
There is little objectionable content, though when thieves enter your settlement your security forces quietly dispose of them.
(Photo: submitted)
Nathan Snow is a freelance writer for Where Its @. Follow him on twitter @nathanssnow.
RATING
4 out of 5 Stars
Highly addicting and undeniably fun, this base-builder will have you happily (or madly) clicking away for hours on end as you outwit the elements. Available on Mac or PC for $19.99.
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'Planetbase': Possibly experiencing colonizing Mars - St. George Daily Spectrum
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To colonize space, go back to the moon and then mine the asteroids – Blasting News
Posted: at 4:25 pm
People are starting to dream about the colonization of #Space again. Elon Musk, the visionary CEO of SpaceX, has already weighed in on a settlement on Mars. Now an Austrian architect and engineer named Werner Grandl has published his own thoughts on how we might colonize space with a plan that does not mention #Mars but rather focuses on the moon and Earth-approaching asteroids.
The first step would be to establish a #Lunar Base and use it to mine the moon for its resources, metals ranging from iron to platinum group metals, helium 3 for future fusion power plants, and water for rocket fuel. The lunar base could consist of a series of modules on the lunar surface or located underground, in a lava tube, protected from radiation and meteor strikes.
The next step would be to go to Earth-approaching asteroids, attach modules to them, and start mining them. If an asteroid happened to be 400 meters in diameter or greater, it could be hollowed out, a colony for about 2,000 people built inside, and then rotated to produce artificial gravity.
Mining and gravity are the keys. The moon and Mars have one drawback in that they have much lower gravity than Earth. People who live on these worlds will grow up accustomed to one-sixth and one-third gravity respectively and will be restricted in where else they can go. A native born Martian or Lunarian may not be able to visit Earth without a great deal of medical intervention and conditioning.
The idea of free-floating asteroid colonies is a variant on an idea first developed in the late 1960s and then popularized in the 1970s and 1980s by the late Dr. Gerard K. ONeill. The idea was that instead of setting down roots on another world with a hostile environment, build space-based colonies in which the environment can be controlled. Using space resources, the number of such flying settlements would be virtually unlimited. The idea somewhat fell out of favor toward the end of the 20th Century, however. But with more efforts being directed to asteroid and lunar mining, the vision of colonies in space may be due for a revival.
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To colonize space, go back to the moon and then mine the asteroids - Blasting News
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Key to developing flood-resistant crops: Genetically engineering plants’ stress response survival strategy – Genetic Literacy Project
Posted: at 4:24 pm
[The following is a Q&A with Dr.Emily Flashman, organic chemistry researcher at the University of Oxford, about a study she co-authored published in Nature Communications March 23, 2017.]
Why is this study so important?
Most living things need oxygen to survive, including plants, but flooding is a major threat to agriculture and vegetation. A plants oxygen levels are jeopardised during a flood, and they basically cant breathe. To protect themselves from flooding and survive longer, plants have a built-in stress response survival strategy, which re-configures their metabolism and supports them to generate more energy.
Emily Flashman
Scientists knew about this stress response, but they didnt know exactly how it was controlled. Our research underpins not only an understanding of how plants respond to loss of oxygen, but also how this response could be manipulated to protect them long term. With climate change of increased prevalence in todays society, flooding is a constant source of concern, so it is even more important for us to understand how hypoxia affects plants and crops, so that we can find new ways to preserve and protect them from it. Manipulating the enzymes involved in the process may help us to cultivate new crops and even to weather-proof them.
What was the aim of your research?
The overall aim [is] to genetically modify crops to make them flood tolerant.
The GLP aggregated and excerpted this blog/article to reflect the diversity of news, opinion, and analysis. Read full, original post:Manipulating plant enzymes could protect crops from flooding
For more background on the Genetic Literacy Project, read GLP on Wikipedia
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Human Genetics Market Analysis and Global Forecast to 2024 … – Digital Journal
Posted: at 4:23 pm
"Human Genetics Market Research Report - Global Forecast to 2024"
Human genetic market, by instruments (Accessories, Device), by end-user (Hospital, Clinic, Research center), by method (Prenatal, Molecular, cytogenetic, presymptomatic), by application (Forensic science institute) - Global Forecast 2024
Human Genetics Market:
Genetics is the study of genes, their functions and their effects. Among the various types of genetics such as molecular genetics, developmental genetics, population genetics and quantitative genetics, human genetics is the study that deals with the inheritance occurs in human beings. It encompasses a variety of overlapping fields such as classical genetics, cytogenetic, molecular genetics, genomics and many more.
The study of human heredity occupies a central position in genetics. Much of this interest stems from a basic desire to know who humans are and why they are as they are. It can be useful as it can answer questions about human nature, understand the diseases and development of effective disease treatment, and understand genetics of human life. At a more practical level, an understanding of human heredity is of critical importance in the prediction, diagnosis, and treatment of diseases that have a genetic component.
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Key Players of Human Genetics Market:
Market Segmentation:
Major Human Genetics Market by Methods: Cytogenetic, Molecular, Presymptomatic and Prenatal.
Human Genetics Market by Product: Consumables, Devices and Accessories.
Human Genetics Market by Applications: Research, Diagnostic and Forensic Science and Others.
Human Genetics Market by End-Users: hospitals, clinics, research centers and forensic departments.
Human Genetics Market Growth Influencer:
The growth driver includes advancement of genetics testing technologies, rising genetic diseases, and rising awareness in terms of increasing knowledge about the potential benefits in genetic testing. Furthermore, aging population and increasing incidence of cancer cases are the other factors propelling growth of human genetics market.
The market for screening the newborns, diagnosing rare and fatal disorders, and predicting the probability of occurrence of abnormalities & diseases are likely to expand. Particularly, genetic tests to screen the newborns are expected to expand immensely over the coming years. Furthermore, the genetic disorders caused by microorganisms such Zika virus is one of the major concern behind of microcephaly. Microcephaly is a birth defect that is associated with a small head and incomplete brain development in newborns that transferred from mother to her child. Such, diseases are expected raise the application of the human genetic studies there by driving by the market. However, the high costing instruments and lack of experienced professionals are the major restraints for the growth of Human genetics market.
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Human Genetics Market Analysis and Global Forecast to 2024 ... - Digital Journal
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How the genomics revolution could finally help Africa : Nature News … – Nature.com
Posted: at 4:23 pm
Nana Kofi Acquah
The genomes of Africans and people of recent African descent house a huge amount of diversity that scientists have only begun to explore.
It took a public-health disaster for the Zimbabwean government to recognize the power of precision medicine. In 2015, the country switched from a standard three-drug cocktail for HIV to a single-pill combination therapy that was cheaper and easier for people to take every day. The new drug followed a World Health Organization recommendation to incorporate the antiretroviral drug efavirenz as a first-line therapy for public-health programmes. But as tens of thousands of Zimbabweans were put onto the drug, reports soon followed about people quitting it in droves.
Collen Masimirembwa, a geneticist and founding director of the African Institute of Biomedical Science and Technology in Harare, was not surprised. In 2007, he had shown that a gene variant carried by many Zimbabweans slows their ability to break down efavirenz1. For those with two copies of the variant about 20% of the population the drug accumulates in the bloodstream, leading to hallucinations, depression and suicidal tendencies. He had tried to communicate this to his government, but at the time efavirenz was not a staple of the country's HIV programme, and so the health ministry ignored his warnings.
Masimirembwa continued to publish his research, but the authorities took no heed until there was trouble. A lot of confusion could have been avoided if the government had listened, he says, It's not a bad drug. We just know it can be improved in Africa.
Masimirembwa is a rare breed. Although scientists worldwide have been pushing for ways to improve health care by tailoring diagnostics and treatment to the environment, lifestyle and genes of individual patients, few researchers have taken this precision-medicine approach in Africa.
That may be changing. In the past five years, international research-funding organizations have invested more than US$100 million in projects to boost genetic research on people in Africa. These studies could lead to improved treatments for Africans as well as for people of recent African descent in Europe and the Americas, who tend to experience more ill health than other ethnicities a situation that is often attributed to socioeconomic challenges, but which some scientists say could also have genetic roots.
Although few would question the importance of African genomics, opinions differ on whether this will translate into better care. Globally, precision medicine has failed to live up to its promise, even in countries that spend lots of money on health. And some argue that the money spent on investigating genes should instead be used to improve basic health care on the continent.
Many African scientists bristle at that simple calculus. They are frustrated that they have been left out of research on everything from health to human origins a field that has particularly benefited from African genome data and they want Africans to gain from the work. For Masimirembwa and others, the money presents an opportunity to take control of how genetic data are collected and used. Unless capacity is built on the continent, Africans won't have a chance to participate, he says.
There's a big problem, however. Precision medicine is expensive. For a continent that, for the most part, struggles to provide even basic health care, tailor-made treatments for individual patients may seem like an unaffordable luxury.
Enter 'precision public health' a new approach to precision medicine that bases health decisions on populations and communities rather than on individuals. It would use genomic insights into a country's population to inform general treatment programmes. For instance, a country might tweak its essential medicines list that specifies the drugs it buys in bulk at reduced rates from pharmaceutical companies, to avoid medicines that are known to cause problems in its population.
This is already happening in some places. Botswana a middle-income country stopped using the three-in-one drug containing efavirenz in 2016, opting instead for a newer and better-performing, but more expensive, drug called dolutegravir. The gene variant that causes problems with efavirenz is common in Botswana around 13.5% of the population has two copies of it. And in 2015, Ethiopia banned the use of the painkiller codeine, because a high proportion of people in the country carry a gene variant that causes them to rapidly convert the drug into morphine, which can cause breathing problems or even death.
Nana Kofi Acquah
Given the continents striking diversity, a one-size-fits-all approach to public health can lead to problems.
The precision public-health approach has great appeal for technology-savvy funding organizations that are eager to make a big impact on health. For instance, last October, the Bill & Melinda Gates Foundation and the Alliance for Accelerating Excellence in Science in Africa (AESA), a funding platform based in Nairobi, Kenya, held a precision public-health summit in Ethiopia's capital Addis Ababa. The European Commission is drawing up plans for a precision public-health initiative. And AESA, which is supported by global funders and African organizations, also plans to expand into precision public health.
But to fulfil this vision, a lot of research needs to be done on African genomes. Most genomic studies so far have focused on white people of European descent. A meta-analysis published in Nature last year2 revealed that only 3% of global genome-wide association studies which link genetic traits to patterns in health, disease or drug tolerance had been performed on Africans, compared with 81% on people of European ancestry.
An added challenge is that Africans are the most genetically varied people on Earth. Africa is where humanity originated and where humans have lived the longest, so populations there have diverged more than on other continents. Its people have genetic variants that are found nowhere else.
These two factors mean that scientists are missing a big piece of the puzzle when it comes to human genetics, says Charles Rotimi, founding director of the National Institutes of Health's Center for Research on Genomics and Global Health in Bethesda, Maryland. Tests developed to inform treatment options for white people might be unsuitable for Africans and people of recent African descent. We are in a position to make wrong diagnoses, he says.
Rotimi is one of the founders of the Human Heredity and Health in Africa (H3Africa) Initiative, created in 2010 by the London-based biomedical charity the Wellcome Trust and the US National Institutes of Health. Aiming to build genomics research capacity in Africa, the first round of the programme distributed $70 million to African scientists who teamed up with partners from the United States and Europe (see 'An evolving consortium'). A second round, worth around $64 million, is at the application stage.
Source: h3Africa
The research targets conundrums that have dogged clinicians for some time such as why Africans have a higher risk of developing chronic kidney disease, and do so at a younger age, than do white people. Nephrologist Dwomoa Adu at the University of Ghana Medical School in Accra, one of the principal investigators in the H3Africa Kidney Research Network, says there are no known environmental factors that explain this. But many Africans carry variants in the gene for apolipoprotein L1 (APOL1) that seem to confer an increased risk of developing kidney disease3. These variants have probably flourished in Africa because they confer resistance to trypanosomiasis, or sleeping sickness, a parasitic disease transmitted by the tsetse fly. But as life expectancy has increased in African countries, the incidence of kidney disease has risen markedly. And because there is little dialysis or kidney-transplant capacity on the continent, most people who develop the condition die, says Adu. It's a nightmare illness.
Adu's study is testing the link between the APOL1 gene and kidney disease in Africa at a greater sensitivity than previous studies. But being able to predict the disease with a gene test will be of little use in places where treatment is inaccessible. So Adu is also looking to understand the mechanism by which the gene causes disease, in the hope that this will lead to new, more-affordable, treatments. It might be possible to block the mechanism, he says.
Other H3Africa projects are looking for genetic clues to people's varying susceptibility to HIV progression, type 2 diabetes and stroke. One project is studying susceptibility to sleeping sickness. To find the genetic variations that might be causing this clinical diversity, H3Africa has created a chip for quickly assessing variation in Africans. Such chips act as a tool for genome-wide association studies by giving researchers a catalogue of variants called single nucleotide polymorphisms (SNPs) that could be linked to risk for a particular disease or drug reaction. So far, H3Africa has identified 2.7 million previously unrecorded SNPs, and many have made it onto the chip. Samples from the San a southern African indigenous group identified as the earliest genetic pool to split off from the rest of the human family tree have a particularly rich vein of new SNPs to study. We can't wait to explore them, says Nicola Mulder, a bioinformatician at the University of Cape Town in South Africa, who led work on the chip.
Although most of the H3Africa projects have yet to publish results, examples of the types of finding it might provide are starting to appear in the literature. For example, in March this year, Rotimi and his colleagues reported4 that about 1% of West Africans, African Americans and others of recent African ancestry carry a gene variant that increases their risk of obesity. And a collaboration between South African and Italian scientists resulted, also last month, in the identification of a genetic variant5 that seems to increase the carrier's risk of heart disease and cardiac arrest. The researchers identified the variant by studying a South African family that has been hit hard by the disease, whose members did not carry any gene variants previously associated with the illness. Although it is not known how common the variant is in South Africa, it could play a part in the high levels of heart disease seen in the country.
These insights could lead to better treatment for Africans and people of recent African descent, and perhaps result in discoveries about human genetics. We are all African beneath our skin, so understanding African genomes is going to be of global benefit, says Rotimi.
The attention that genomics research is getting in Africa has not been without critics. Cost is a major concern. Like most developing regions, Africa is seeing a rapid rise in non-communicable diseases such as cancer. In developed countries, cancer treatments are profoundly informed by genomics. But many African nations have only a handful of cancer specialists, and limited capacity for diagnosis and treatment. Although breast-cancer rates, for example, are lower in parts of Africa than in developed countries, more Africans die from the disease and not just because of a lack of access to care standard treatments sometimes seem less efficient in some African women. Still, basic cancer-therapy equipment may be higher on the wish list than new genomic tests tailored to African people's tumours. In April last year, for example, Uganda's only radiotherapy machine broke down, forcing people to travel to neighbouring Kenya for treatment, at their own cost.
There are those who think that projects such as H3Africa are over-stating the significance of the genetic variance between Africans and Europeans, and its effects on treatment options. Reinhard Hiller, director of the Centre for Proteomic and Genomic Research, a non-profit bioinformatics organization in Cape Town, is pleased that there is growing interest in African genomics. But he thinks that many genomic approaches, especially for treating cancer, can be applied to Africans now. A biopsy from a black woman's breast tumour can undergo the same analysis as that of a European's to look for the tell-tale genetic signs of its origin, he argues. And starting to do this, even on a small scale, might provide more informative data than focusing only on the differences, he says. We shouldn't try and prevent governments and societies in Africa from having access to cutting-edge solutions merely because they are deemed imperfect.
Insights from that could feed back to basic genomic research where outcomes warrant it. We have to be a lot more pragmatic and do whatever we can do now. If we don't get on with it we'll be sitting here in 50100 years still without answers.
His lab is one of the few in Africa that can do genomic sequencing. At the moment, most of its therapeutic work is for the private health sector in South Africa. But he's hopeful that genomic medicine can make it into the public sector. The main constraint, besides the cost, is the lack of technicians and counsellors, he says something that is also true in many wealthy countries, he adds.
But apart from the time it takes to do the research, the slow pace of government policy in Africa presents another stumbling block for the rollout of precision medicine. Masimirembwa's long-ignored advice on efavirenz in Zimbabwe is a case in point.
As it turns out, the three-in-one HIV drug that the country rolled out in 2015 works well in people who tolerate it. But differentiating those individuals from the 20% or so who will probably have a bad reaction is difficult. Masimirembwa and his colleagues developed a genetic test for the gene variant that makes carriers sensitive to the drug. This, he says, could be used to identify people who need to be given a lower dose of efavirenz something that he and his colleagues have determined decreases the risk of side effects while maintaining its efficacy. Last year he won a 500,000 rand ($39,000) commercialization grant from the South African government for his test. But he's up against the clock.
Zimbabwe's government, along with those in South Africa and Uganda, are considering going the same way as Botswana did, and ditching the efavirenz-based treatments entirely. Although the replacement drugs would not necessarily be any less effective, it would mean that Masimirembwa's test would no longer have a market a disappointing fate for his discovery.
But Masimirembwa thinks that there is still time to make good on his idea. It takes governments years to make decisions on public health, he says, and the new drugs might be unaffordable. And while the Zimbabwean government mulls over options, many HIV-positive people in the country still face a difficult choice: take the drugs that are available and experience serious side effects, or stop taking them and risk developing AIDS. There are second-line alternatives, but most patients are told to 'hang in there' to see if the side effects subside, he says. Few are offered different drugs.
One good thing has come out of the debacle so far: it has opened the government's eyes to the value of Masimirembwa's research. In February this year he was awarded a $15,000 national science award. Whilst there was initially poor acceptance of our findings, the current national and regional support is very encouraging for the future of genomic medicine, he says. And if his test makes it from the bench to the bedside, it will set a good precedent, he adds. We will have demonstrated that African scientists can take an idea from the lab to the market.
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Climate change impacting ‘most’ species on Earth, even down to their genome – The Guardian
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A female kangaroo lies dead after she was hit by a car while moving to higher ground away from floodwaters in Rockhampton, Tuesday, April 4, 2017. Flood waters are expected to hit levels not seen in 60 years. Climate change is intensifying extreme weather events such as these as well as making them hit more frequently. Such events, as well as other climate impacts, are forcing animals to move around the world, often resulting in population decline and local extinction. Photograph: Dan Peled/AAP
Climate change is rapidly becoming a crisis that defies hyperbole.
For all the sound and fury of climate change denialists, self-deluding politicians and a very bewildered global public, the science behind climate change is rock solid while the impacts observed on every ecosystem on the planet are occurring faster in many parts of the world than even the most gloomy scientists predicted.
Given all this, its logical to assume life on Earth the millions of species that cohabitate our little ball of rock in space would be impacted. But it still feels unnerving to discover that this is no longer about just polar bears; its not only coral reefs and sea turtles or pikas and penguins; it about practically everything including us.
Three recent studies have illustrated just how widespread climate changes effect on life on our planet has already become.
There has been a massive under-reporting of these impacts.
It is reasonable to suggest that most species on Earth have been impacted by climate change in some way or another, said Bret Scheffers with the University of Florida. Some species are negatively impacted and some species positively impacted.
Scheffers is the lead author of a landmark Science study from last year that found that current warming (just one degree Celisus) has already left a discernible mark on 77 of 94 different ecological processes, including species genetics, seasonal responses, overall distribution, and even morphology i.e. physical traits including body size and shape.
Woodland salamanders are shrinking in the Appalachian Mountains; the long-billed, Arctic-breeding red knot is producing smaller young with less impressive bills leading to survival difficulties. Marmot and martens in the Americas are getting bigger off of longer growing seasons produce more foodstuffs, while the alpine chipmunks of Yellowstone National Park have actually seen the shape of their skulls change due to climate pressure.
Life is proving just as strange under our new climate regime when it comes to genetics. Pink salmon genetics are evolving for earlier migrations with fewer salmon encoding their genes for earlier migrations. In making its way north, the southern flying squirrel has begun hybridising with the northern flying squirrel. The water flea has seen its genetics change over just a few decades to respond to higher water temperatures.
But the fact that so many species are undergoing genetic changes doesnt mean they are successfully adapting to our warmer world.
In many instances genetic diversity is being lost due to climate change, not just in nature but also in resources that humans depend on such as crops and timber, Scheffers said. It is important to not confuse species responses and adaptation as an indicator that everything will be okay.
Scheffers and his colleagues findings are furthered by a study in Nature Climate Change this February that found that 47 percent of land mammals and 23 percent of birds have already suffered negative impacts form climate change. In all, nearly 700 species in just these two groups are flagging under climate change, according to this research.
We now have evidence that entire ecosystems, some the size of entire states within the USA, are changing.
There has been a massive under-reporting of these impacts, co-author James Watson with the University of Queensland said in a press release, pointing out that the IUCN Red List only considers seven percent of mammals and four percent of birds as threatened by climate change and severe weather. The IUCN often drags behind the latest science many species wait decades for an update while most species on Earth have never been evaluated.
In worst-case scenarios, species are simply vanishing.
A third study this one in PLOS Biology found that more than 450 plants and animals have undergone local extinctions due to climate change. Local extinction, as its name implies, doesnt mean the species are gone for good, but that they vanish from a portion of their range. For example, the barren ground shrew has seen its range constrict aggressively as its tundra home warms.
If global warming continues, species that cannot change or move quickly enough may go globally extinct, the studys author, John Wiens with the University of Arizona, said.
Such global extinctions have already happened. Last year, scientists discovered that the Bramble Cay melomys an Australian rat-like rodent went extinct recently (it was last seen in 2007) due to rising seas inundating its tiny coral island.
Its the first mammal confirmed to be pushed to extinction entirely due to climate change or one could say our fossil fuel addiction.
Wiens study also found that local extinctions were happening more in the tropics than in temperate areas. This is worrying since the tropics hold the vast bulk of the worlds biodiversity, with many tropic species still unstudied and even undiscovered by scientists.
But changes are rippling even beyond single extinctions.
We now have evidence that entire ecosystems, some the size of entire states within the USA, are changing in response to climate change, said Scheffers. He pointed to kelp forests that he said are dying and being replaced by rocky, less-productive ecosystems.
Made up of giant brown algae, kelp as tall as trees provide essential nurseries for fish, protect coastlines against worsening storm surges, store vast amounts of carbon, and provide homes for species like sea otters. But warming waters combined with ocean acidification is taking its toll.
And Scheffers expects more ecosystem shifts, as scientists describe them, in the future. Cloud forests are at risk of becoming high altitude grasslands, coral reefs of becoming algal-dominated ecosystems, and Arctic sea ice open ocean.
Given what we are seeing now, just imagine what will happen to all these species when temperatures increase by four of five times that amount, said Wiens.
If global society doesnt kick its fossil fuel addiction and quick scientists estimate that temperatures could rise 4-5 degrees Celsius by the end of the century. Such a rise would be not so much catastrophic, but apocalyptic.
One thing that is certain is that this global response to climate change points to an increasingly unpredictable future for humans, Scheffers said.
More than half of the worlds humans today live in cities but that wont make any of us immune to the changes going on in nature. According to Scheffers research, humans will see a drop in productivity of various crops or timber species, a drastic loss in marine fisheries, a potential rise in new diseases as well as disease spreading to places theyd never been before. Meanwhile, declines in coral reefs, kelp forests and mangroves could lead to more lives lost in climate-fueled storms. Loss of global biodiversity will also have knock-on effects in societies around the world, from less productive ecosystems to impacts we simply cant predict today.
I was not surprised, Scheffers said of his research. But I was alarmed. The extent of impacts is vast and has impacted every ecosystem on the Earth.
Is all this alarmist? Sure. But its high time we set off the alarms they should have started ringing in the 1980s and been deafening by the early 1990s.
Does all this imply nothing can be done? Of course not.
Governments and large organisation can invest and commit to reducing carbon emissions and protecting natural ecosystems that increase resilience to climate change not only for nature but for people as well, Scheffers said. These include large areas of connected forests which cool local and regional climate, pristine coral and oyster reefs that not only provide food but reduce storm surges, and well managed watersheds that will maintain adequate fresh water.
Wiens agreed, but added that there also needs to be more, bolder, large-scale efforts to reduce the carbon that is already in the atmosphere.
A number of companies have already produced technologies that do just that: they pull carbon out of the atmosphere. But to date, lack of money and support have delayed rolling out such devices en masse.
Meanwhile, the researchers agree that the Paris Agreement the only global agreement to tackle climate change must be protected.
Wisdom comes from combining truth with beliefs. There is a global scientific consensus around climate change and its impacts on nature and humans. It is truth that climate change will have devastating impacts on human health and quality of life, Scheffers said, noting that the Trump Administrations current flirtation with pulling out of the Paris Agreement is not only an unwise decision but a dangerous decision.
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Fish study shows important genome interactions in animal cells – Science Daily
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Science Daily | Fish study shows important genome interactions in animal cells Science Daily All animal cells are made up of two genomes, the nuclear genome with 10,000s of protein coding genes and the mitochondrial genome with 13 protein-encoding genes. All 13 genes from the mitochondrial genome interact with approximately 76 nuclear ... |
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Fish study shows important genome interactions in animal cells - Science Daily
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Screening the dark genome for disease – Medical Xpress – Medical Xpress
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April 3, 2017 by Ken Kingery Charles Gersbach, the Rooney Family Associate Professor of Biomedical Engineering at Duke University. Credit: Duke University
Researchers have developed a method to swiftly screen the non-coding DNA of the human genome for links to diseases that are driven by changes in gene regulation. The technique could revolutionize modern medicine's understanding of the genetically inherited risks of developing heart disease, diabetes, cancer, neurological disorders and others, and lead to new treatments.
The study appeared online in Nature Biotechnology on April 3, 2017.
"Identifying single mutations that cause rare, devastating diseases like muscular dystrophy has become relatively straightforward," said Charles Gersbach, the Rooney Family Associate Professor of Biomedical Engineering at Duke University. "But more common diseases that run in families often involve lots of genes as well as genetic reactions to environmental factors. It's a much more complicated story, and we've been wanting a way to better understand it. Now we've found a way."
The new technique relies on the gene-hacking system called CRISPR/Cas9. Originally discovered as a natural antiviral defense mechanism in bacteria, the system recognizes and homes in on the genetic code of previous intruders and then chops up their DNA. In the past several years, researchers have harnessed this biologic system to precisely cut and paste DNA sequences in living organisms.
In the current study, researchers added molecular machinery that can control gene activity by manipulating the web of biomolecules that determines which genes each cell activates and to what degree.
With the new tool, Gersbach and his colleagues are exploring the 98 percent of our genetic code often referred to as the "dark matter of the genome."
"Only a small fraction of our genome encodes instructions to make proteins that guide cellular activity," said Tyler Klann, the biomedical engineering graduate student who led the work in Gersbach's lab. "But more than 90 percent of the genetic variation in the human population that is associated with common disease falls outside of those genes. We set out to develop a technology to map this part of the genome and understand what it is doing."
The answer, says Klann, lies with promoters and enhancers. Promoters sit directly next to the genes they control. Enhancers, however, which modulate promoters, can be just about anywhere due to the genome's complex 3D geometry, making it difficult to discern what they're actually doing.
"If an enhancer is dialing a promoter up or down by 10 or 20 percent, that could logically explain a small genetic contribution to cardiovascular disease, for example," said Gersbach. "With this CRISPR-based system, we can more strongly turn these enhancers on and off to see exactly what effect they're having on the cell. By developing therapies that more dramatically affect these targets in the right direction, we could have a significant effect on the corresponding disease."
That's all well and good for exploring the regions of the genome that researchers have already identified as being linked to diseases, but there are potentially millions of sites in the genome with unknown functions. To dive down the dark genome rabbit hole, Gersbach turned to colleagues Greg Crawford, associate professor of pediatrics and medical genetics, and Tim Reddy, assistant professor of bioinformatics and biostatistics. All three professors work together in the Duke Center for Genomic and Computational Biology.
Crawford developed a way of determining which sections of DNA are open for business. That is, which sections are not tightly packed away, providing access for interactions with biomachinery such as RNA and proteins. These sites, the researchers reason, are the most likely to be contributing to a cell's activity in some way. Reddy has been developing computational tools for interpreting these large genomic data sets.
Over the past decade, Crawford has scanned hundreds of types of cells and tissues affected by various diseases and drugs and come up with a list of more than 2 million potentially important sites in the dark genomeclearly far too many to investigate one at a time. In the new study, Crawford, Reddy and Gersbach demonstrate a high-throughput screening method to investigate many of these potentially important genetic sequences in short order. While these initial studies screened hundreds of these sites across millions of base pairs of the genome, the researchers are now working to scale this up 100- to 1000-fold.
"Small molecules can target proteins and RNA interference targets RNA, but we needed something to go in and modulate the non-coding part of the genome," said Crawford. "Up until now, we didn't have that."
The method starts by delivering millions of CRISPR systems loaded into viruses, each targeting a different genetic point of interest, to millions of cells in a single dish. After ensuring each cell receives only one virus, the team screens them for changes in their gene expression or cellular functions.
For example, someone researching diabetes could do this with pancreatic cells and watch for changes in insulin production. Those cells that show interesting alterations are then isolated and sequenced to determine which stretch of DNA the CRISPR affected, revealing a new genetic piece of the diabetes puzzle.
The technique is already producing results, identifying previously known genetic regulatory elements while also spotting a few new ones. The results also showed it can be used to turn genes either on or off, which is superior to other tools for studying biology which only turn genes off. Different cell types also produced differentbut partially overlappingresults, highlighting the biological complexity in gene regulation and disease that can be interrogated with this technology.
"Now that we have this tool, we can go in and annotate the functions of these previously unknown but important stretches of our genome," said Gersbach. "With so many places to look, and the ability to do it quickly and robustly, we'll undoubtedly find new segments that are important for disease, which will provide new avenues for developing therapeutics."
Explore further: Controlling genes using CRISPR shows high degree of specificity
More information: CRISPRCas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome, Nature Biotechnology, nature.com/articles/doi:10.1038/nbt.3853
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