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Human Genetics Market Analysis and Global Forecast to 2024 … – Press Release Rocket
Posted: April 7, 2017 at 8:36 pm
Human Genetics Market Research Report Global Forecast to 2024
Human genetic market, by instruments (Accessories, Device), by end-user (Hospital, Clinic, Research center), by method (Prenatal, Molecular, cytogenetic, presymptomatic), by application (Forensic science institute) Global Forecast 2024
Human Genetics Market:
Genetics is the study of genes, their functions and their effects. Among the various types of genetics such as molecular genetics, developmental genetics, population genetics and quantitative genetics, human genetics is the study that deals with the inheritance occurs in human beings. It encompasses a variety of overlapping fields such as classical genetics, cytogenetic, molecular genetics, genomics and many more.
The study of human heredity occupies a central position in genetics. Much of this interest stems from a basic desire to know who humans are and why they are as they are. It can be useful as it can answer questions about human nature, understand the diseases and development of effective disease treatment, and understand genetics of human life. At a more practical level, an understanding of human heredity is of critical importance in the prediction, diagnosis, and treatment of diseases that have a genetic component.
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Key Players of Human Genetics Market:
Market Segmentation:
Major Human Genetics Market by Methods: Cytogenetic, Molecular, Presymptomatic and Prenatal.
Human Genetics Market by Product: Consumables, Devices and Accessories.
Human Genetics Market by Applications: Research, Diagnostic and Forensic Science and Others.
Human Genetics Market by End-Users: hospitals, clinics, research centers and forensic departments.
Human Genetics Market Growth Influencer:
The growth driver includes advancement of genetics testing technologies, rising genetic diseases, and rising awareness in terms of increasing knowledge about the potential benefits in genetic testing. Furthermore, aging population and increasing incidence of cancer cases are the other factors propelling growth of human genetics market.
The market for screening the newborns, diagnosing rare and fatal disorders, and predicting the probability of occurrence of abnormalities & diseases are likely to expand. Particularly, genetic tests to screen the newborns are expected to expand immensely over the coming years. Furthermore, the genetic disorders caused by microorganisms such Zika virus is one of the major concern behind of microcephaly. Microcephaly is a birth defect that is associated with a small head and incomplete brain development in newborns that transferred from mother to her child. Such, diseases are expected raise the application of the human genetic studies there by driving by the market. However, the high costing instruments and lack of experienced professionals are the major restraints for the growth of Human genetics market.
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State will study whether to expand DNA database – WRIC
Posted: at 8:35 pm
RICHMOND, Va. (WRIC) Nearly a year after Jesse Matthew was convicted for the murder of University of Virginia student Hannah Graham, her parents came to the Capitol asking lawmakers to take a closer look at expanding the states DNA database. They say it could have saved their daughters life.
He wouldnt have been hiding in plain sight, living in Charlottesville, working for the university medical system, coaching football at a local school, Sue Graham said during her visit to the Capitol in January.
Albemarle County Sheriff Chip Harding, who brought the Grahams to Richmond, has been fighting to expand the states DNA database for years. This week, the states crime commission decided they will study the issue taking expansion one step closer to becoming a reality.
DNA has just transformed the way we do law enforcement, Harding said. Its not only helped us locate the guilty, its helped free the innocent. If they reach the same conclusions Ido, I think we have a lot better chance of moving this initiative forward in Virginia.
Efforts to expand the DNA database have stalled in years past. Some lawmakers and groups like the ACLU have cited concerns over personal privacy, saying there has to be a balance between protecting the public and civil liberties.
That data bank in Virginia has not been abused for over a quarter of a century, Harding said.
Harding, who has worked in law enforcement for nearly 40 years, says hes encountered too many victims he says could have been saved by expanded DNA testing.
If we can take DNA upon conviction on a number of misdemeanors, I dont have to be meeting these victims, Harding said.
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FDA approves home test for Alzheimer’s genetic risk – CBS News
Posted: at 8:35 pm
A saliva collection kit from 23andMe. The company won FDA approval in April 2017 to offer genetic tests to evaluate the risk of developing Alzheimers, Parkinsons and other diseases.
23andMe
The U.S. Food and Drug Administration has approved the first home genetic tests for 10 health risks, including Parkinsons disease and late-onset Alzheimers.
The approval -- granted to the California-based company 23andMe Inc. -- could help test users make lifestyle choices or spark important discussions with health care providers, the FDA said.
Consumers can now have direct access to certain genetic risk information, Dr. Jeffrey Shuren, director of the FDAs Center for Devices and Radiological Health, said Thursday in an agency news release.
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Two years ago, the company 23andMe was poised to revolutionize personal genetic medicine. With a $99 saliva kit, it offered to analyze your DNA, ...
But, it is important that people understand that genetic risk is just one piece of the bigger puzzle. It does not mean they will or wont ultimately develop a disease, he added.
Along with genetics, many things can contribute to disease and illness, including lifestyle and environmental factors, the FDA said.
The newly approved tests work by isolating DNA from a saliva sample. The DNA is then tested for more than 500,000 genetic variants. The presence or absence of these variants is linked with higher risk for any one of 10 diseases and conditions.
Besides Parkinsons or late-onset Alzheimers disease, they include: celiac disease; alpha-1 antitrypsin deficiency, which increases risk of lung and liver disease; a movement disorder called early onset primary dystonia; factor XI deficiency (hemophilia C), a blood clotting disorder; and Gaucher disease type 1, which causes liver and spleen enlargement and growth retardation.
The other three are glucose-6-phosphate dehydrogenase deficiency (or G6PD), a red blood cell condition; an iron overload disorder called hereditary hemochromatosis; and hereditary thrombophilia, a blood clot disorder.
Hoping to streamline approvals, the FDA plans to exempt additional 23andMe genetic health risk tests from its pre-market review. It said it may also exempt such tests from other companies that meet preliminary expectations.
By establishing special controls and a pre-market review exemption, the FDA can provide a streamlined, flexible approach for tests using similar technologies to enter the market while the agency continues to help ensure that they provide accurate and reproducible results, Shuren said.
The FDA said it does not plan exemptions for genetic health risk tests that function as diagnostic tests, which might be used for major treatment decisions. An example would be a genetic test for a BRCA mutation that may lead to removal of a womans breasts or ovaries in order to prevent cancer, the agency said.
Risks associated with the 23andMe genetic tests include false-positive findings -- meaning they wrongly indicate a key genetic variant in the test taker. Similarly, false-negative findings can occur where the results incorrectly indicate lack of a critical genetic variant.
Users of these tests should consult a health care professional with questions or concerns about results, the FDA said.
2017 HealthDay. All rights reserved. This material may not be published, broadcast, rewritten, or redistributed.
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Bill OK’ing DNA Collection From All Felony Arrestees Passes House – WBAA
Posted: at 8:35 pm
WBAA | Bill OK'ing DNA Collection From All Felony Arrestees Passes House WBAA Legislation allowing police to collect DNA samples from anyone they arrest for a felony took a step closer to becoming law. Backers of the legislation say DNA collection will help identify the guilty and exonerate the innocent. Under the bill, if a ... |
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Residente Creates an Edgy, Musical Manifesto That Started With a DNA Test – NBCNews.com
Posted: at 8:35 pm
"Residente" explores different regional sounds from Tuvan throat singing to music of the Dagomba tribe. Ruben Salgado Escudero / Rub?n Salgado Escudero
What inspired you to create a film and music based on your DNA results?
"The DNA test is amazing and I thought, well, OK, I'll go to these different countries and [see] what's gonna happen. The thing is that I picked the most surprising places I thought I [would] never have blood[lines]. An album completely based on my DNA [would] take five years or so, because there's a lot of countries."
The Siberian highlands marked a profound beginning for you.
"I'm thinking, 'Why am I doing this?' I started to [become] nostalgic and melancholic because, well, when you're in the forest surrounded by wolves, you start to do that. It would be very easy to [record] in one studio, without missing my son and my wife. It was hard for everyone, but I [realized] wanted to do what I felt I needed to do."
You had written your Spanish-French single Desencuentro before the journey. It was a bit prophetic that it came to you after your first DNA test and inspired you to retake the test and create this project.
"The cool thing about Desencuentro [which means 'failure to meet up'] is that you can apply it to different situations. Like the person of your life that you're not gonna meet, never, even though you should be together, and sometimes you cross paths, but never meet. [I applied it to] the idea of DNA and how people take different paths. In Kenya, 2,000 people decided to go to Australia and another group decided [on] China. That's a desencuentro, too."
Walk me through the experience of writing while absorbing the sounds and cultures you encountered.
"Writing for me was amazing. I was feeling super excited. I write out of the studio most of the time, outside or in a bar that I like in NY. So, imagine you're surrounded by mountains in Siberia, writing. That's a dream for any writer, and then being with the Dagomba tribes. I had my notebook, writing ideas Amazing!
"The difficult thing was the language barrier and how I was going to explain to these different cultures what I wanted to do with the music. In terms of rhythms, some of them, their culture is very inside them and they don't want to get out of that. So, you have to be, not only careful [but] aware, and try to understand them and go slow. You can't go there and say 'You know this is my music and can you play over it?" No. You have to take your time."
Your recording of La Sombra with famed Tuareg guitarist Bombino (a.k.a. Omar Moctar) is very powerful. I really loved it.
"I recorded with Bombino in Burkina Faso for two weekends. He's from Niger [but] it was a little bit crazy to be there because Boko Haram and Al-Qaeda were attacking villages nearby.
After I went to Burkina Faso, they attacked the hotel next to my hotel, so it was kind of dangerous. I was a little worried but wanted to go anyways, to Niger. My DP (Director of Photography) and field producer told me, 'Don't go because you're an artist and if they know you're here, it's gonna be bad for us, too.' The thing is, sometimes they like to take hostages. So, [only] they went to film some shots.
"The song, about shadows and light, is one of my favorites. I was looking at shadow as the truth and light as a lie. Because always the shadow has a bad connotation. But in this case, it's a good connotationThe light shows you the things that you wanna see. But they don't show you the truth. Shadow gives form to objects; tells you the truth. So, I use shadow to represent Africa. So, it's kind of philosophical but it's also very accessible the way I'm saying it."
Your journey through the Caucasus-Georgia, Armenia, South Ossetia, was emotionally wrenching. I cried the whole time. And when that mother talked about her own kids dying in the children's massacre, my heart literally hurt.
"It touched me very deep, very hard. The energy that you feel there-it's incredible. You can feel that kids died. It's a weird energy but it's real. When she was talking about her sons and how they died, it was very sad. I was feeling sad the whole week, thinking, 'Why am I doing this? I always carry a lot of things-troubles of the world'-so at that time I was thinking, 'Should I carry this, too, because I'm feeling so bad?' All the stories there, they changed me."
The song that came out of that visit, Guerra, is an intense, hauntingly beautiful song that starts with war widows praying through choral harmonies.
"Yeah, they were from Chechnya. And then you have the drums from Ossetia, and the banduri (string instruments) from Georgia. And the Chechens, they were accused of bombing that school in Beslan, North Ossetia. So, I put them together.
"At that time [of the filming] I had already written Guerra (War), like two verses, from a first person point of view-not a sad song; it's la guerra like you can't beat me, I'm guerra.
But after I visited those places, the song changed. And I did a different ending that destroys war that is very experimental and very hard core, too-very Hendrix-with Omar Rodriguez Lopez playing the guitar with an orchestra and a band. I think it's a very powerful song.
This [project] is very relevant. We all come from the same place. Even though we are different, we are equally different."
The album was just released March 31st. Coincidentally, Residente learned something interesting about his genealogy: Hamilton creator Lin-Manuel Miranda turned out to be a third cousin.
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Fiat DNA thrives in Japanese-built 124 Spider – Virginian-Pilot
Posted: at 8:35 pm
A lady. A lovely, sensual, responsive Italian lady.
Thats how Car and Driver magazine described the Fiat 124 after its debut in the 1960s.
Wow. Hows that for opening thrills?
The sentiments no doubt a bit sexist by todays standards, but heck, it was the 60s. And there was a point to the seductive words: Not all sports cars have to be hard-edged. This one had all the mechanicals and quickness and a sporty suspension but also a more refined interior and quieter ride.
After a nearly 40-year absence (the classic endured till 1978, then buzzed around until 85 as the Fiat 2000), the Fiat 124 Spider has returned in the form of a 2017 model. But this time the Italian lady has a factory live-in friend, the Mazda Miata.
Mazda, you see, manufactures the 124 alongside the Miata at its Hiroshima, Japan, plant and provides many of its underpinnings. But the 124 retains the shape and body creases of its legendary Pininfarina design, and its engine is actually prebuilt and shipped from a Fiat plant in Italy. So its Fiat DNA is alive and well.
It also is 5 inches longer, has more upscale materials inside and boasts a noticeably quieter ride than the Miata. Acoustic glass and headliner help keep noise to a conversation-friendly level.
In contrast to Mazdas naturally aspirated 2.0-liter engine, the Spider gets a turbocharged 1.4-liter engine that puts out 160 horsepower and 184 pound-feet of torque (4 more horses ride along with the Abarth version).
Shifting the standard manual transmission in this little bug-eyed roadster is a blast, thanks to its tight six-speed shift box. A six-speed automatic is optional on all trims and, while it ticks smoothly, it can be a little sluggish to respond.
On the road, the rear-wheel-drive 124 is quick and nimble. Corners are taken confidently thanks to precision steering and Fiats own suspension components. Bumps and dips are gobbled up around town, too. The highway ride is comfortable for a roadster, and an EPA-estimated 36 mpg makes it even more tempting to take out on a road trip (25 mpg around town).
Flipping down the soft top, which has a glass rear window, is easy-breezy. It takes less than a minute and can be done without leaving the drivers seat. Just unlatch at the top and toss it behind you.
Put the top up and taller folks will find the Spiders cabin a little cramped. Roadsters typically are like airplane cockpits for those over 6 feet tall: They must carefully squeeze in each of the body parts. Same deal here, with limited headroom, legroom and elbow room.
Likewise, weekend jaunts will require thoughtful packing with a mere 4.9 cubic feet of trunk space available.
But the interior has a nice look and feel, with soft-touch materials surrounding the instrument panel and leather-wrapped steering wheel. There are piano-black accents throughout. A 7-inch touchscreen (optional on the base model) is bright and clear, and its menu is easy to navigate. A nine-speaker Bose sound system is available.
Three trim levels are offered. It starts with the base Classica, which gets 16-inch alloys, push-button start and a tiny 3-inch touchscreen. The Lusso adds 17-wheel wheels, fog lights, leather seats and a tech package with rearview camera and bigger touchscreen.
For the racing-inspired, theres the top-line Abarth: quad exhaust tips, limited-slip rear differential, adjustable driving modes and Brembo high-performance brakes, plus some sporty interior accents like simulated suede seats. Fiat even includes racing-school instruction in Arizona to every Abarth buyer willing to make the trip.
After all, this Italian lady may be lovely and sensual but she has a racy side, too.
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"RNA Trumps DNA" –In the Evolution of Earth’s Smartest "Alien" Species – The Daily Galaxy (blog)
Posted: at 8:35 pm
Octopus, squid, and cuttlefish are famous for engaging in complex behavior, from unlocking an aquarium tank and escaping to instantaneous skin camouflage to hide from predators. A new study suggests their evolutionary path to neural sophistication includes a novel mechanism: Prolific RNA editing at the expense of evolution in their genomic DNA.
The research builds on the scientists' prior discovery that squid display an extraordinarily high rate of editing in coding regions of their RNA -- particularly in nervous system cells -- which has the effect of diversifying the proteins that the cells can produce. (More than 60 percent of RNA transcripts in the squid brain are recoded by editing, while in humans or fruit flies, only a fraction of 1 percent of their RNAs have a recoding event.)
In the present study, the scientists found similarly high levels of RNA editing in three other "smart" cephalopod species (two octopus and one cuttlefish) and identified tens of thousands of evolutionarily conserved RNA recoding sites in this class of cephalopods, called coleoid. Editing is especially enriched in the coleoid nervous system, they found, affecting proteins that are the key players in neural excitability and neuronal morphology.
In contrast, RNA editing in the more primitive cephalopod Nautilus and in the mollusk Aplysia occurs at orders of magnitude lower levels than in the coleoids, they found. "This shows that high levels of RNA editing is not generally a molluscan thing; it's an invention of the coleoid cephalopods," Rosenthal says. In mammals, very few RNA editing sites are conserved; they are not thought to be under natural selection. "There is something fundamentally different going on in these cephalopods where many of the editing events are highly conserved and show clear signs of selection," Rosenthal says.
The scientists also discovered a striking trade-off between high levels of RNA recoding and genomic evolution in these cephalopods. The most common form of RNA editing is carried out by ADAR enzymes, which require large structures (dsRNA) flanking the editing sites. These structures, which can span hundreds of nucleotides, are conserved in the coleoid genome along with the editing sites themselves. The genetic mutation rate in these flanking regions is severely depressed, the team reported.
"The conclusion here is that in order to maintain this flexibility to edit RNA, the coleoids have had to give up the ability to evolve in the surrounding regions - a lot," Rosenthal says. "Mutation is usually thought of as the currency of natural selection, and these animals are suppressing that to maintain recoding flexibility at the RNA level."
Rosenthal and colleagues at the MBL are currently developing genetically tractable cephalopod model systems to explore the mechanisms and functional consequences of their prolific RNA editing. "When do they turn it on, and under what environmental influences? It could be something as simple as temperature changes or as complicated as experience, a form of memory," he says.
The Daily Galaxy via Woods Hole Marine Biological Laboratory
Image credit: With thanks to Alamy Photos
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DNA Links South Side Man to 3 Cold-Case Rapes, 1 Murder – DNAinfo
Posted: at 8:35 pm
Antonio Smith, 35, is charged with first-degree murder, attempted first-degree murder and sexual assault. View Full Caption
DNAinfo; Chicago Police Department
COOK COUNTY CRIMINAL COURTHOUSE DNA evidence has linked a South Side man to three violent rapes, including a case where the victim later died of injuries sustained in the attack.
Antonio Smith, 35, appeared in bond court Friday on charges of first-degree murder, attempted first-degree murder and aggravated criminal sexual assault with a weapon.
"You are an extreme danger to the community," Cook County Judge Donald Panarese Jr. said in court. "Bond will be denied."
The first attack happened Feb. 8, 2002, as a 33-year-old woman walked in the 4600 block of South Prairie Avenue, Assistant State's Attorney Mary Anna Planey said.
Smith is accused of approaching the woman and having a brief conversation before punching her multiple times in a nearby vacant lot. Smith then raped the woman, knocked her unconscious with a brick and stole her coat, keys and money, prosecutors said.
A rape kit was collected at Provident Hospital.
On Jan. 11, 2007, police found a 46-year-old woman unconscious and naked from the waist down near a carport in the 4200 block of South Prairie Avenue, Planey said.
The victim had been raped and beaten so badly that she had loose teeth, multiple lacerations to her head and bruises on her face, prosecutors said. She remained unconscious for two months and later died of her injuries on Oct. 27, 2008.
According to the Cook County Medical Examiner's Office, the victim died of anoxic encephalopathy, a condition in which brain tissue is so deprived of oxygen that a victim suffers a "global loss of brain function." The case was ruled a homicide; the cause of death was blunt-force trauma.
A rape kit was also collected in this case.
On Aug. 14, 2010, Smith approached a 35-year-old woman walking near 80th Street and Cottage Grove Avenue, and asked if she wanted to get a drink, prosecutors said. The woman agreed and got into Smith's car.
Smith then pulled into a parking lot, where he proceeded to repeatedly punch the victim before raping her, Planey said. The woman was found unconscious and partially naked about 5:30 a.m. in the 1000 block of East 80th Street. Her underwear had been pulled down to her thighs, prosecutors said.
A rape kit was collected at Jackson Park Hospital, where the victim was treated for multiple contusions, lacerations and soft-tissue damage, Planey said.
Roughly two years later, on May 22, 2012, Smith was convicted of retail theft and sentenced to 12 months probation, according to prosecutors. Following that felony conviction, Smith's DNA was collected and entered into a national database.
DNA collected from the 2002, 2007 and 2010 rapes soon proved to be a match to Smith, prosecutors said.
It is unclear why prosecutors then waited five years to file charges.
Smith, of the 7000 block of South Indiana Avenue, has two living children, ages 14 and 15, and works odd jobs to make money, his public defender said Friday.
Smith is the father of Antonio Smith Jr., who was 9 years old when he was gunned down in 2014. The boy was in a South Side yard when four men seeking to shoot rival gang members opened fire, prosecutors previously said.
RELATED: Men Who Killed Antonio Smith, 9, Were Hunting Rival Gang Members
Four men were charged with first-degree murder in 2014. Their cases are still pending before Judge Evelyn B. Clay. The men will next appear in court separately on April 18, April 20, April 25 and May 2.
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Nuclear architecture emerges at the awakening of the genome – Phys.Org
Posted: at 8:35 pm
April 6, 2017 A depiction of the double helical structure of DNA. Its four coding units (A, T, C, G) are color-coded in pink, orange, purple and yellow. Credit: NHGRI
The DNA molecules in each one of the cells in a person's body, if laid end to end, would measure approximately two metres in length. Remarkably, however, cells are able to fold and compact their genetic material in the confined space of the nucleus, which spans only a few micrometres. Importantly, the compaction and arrangement of the genome inside the nucleus needs to be achieved in an ordered fashion that still allows cells to access the genetic information appropriately, for example to produce messenger RNAs for specific proteins, or to replicate the genetic material prior to cell division. When mutations occur that disrupt features associated with the spatial organisation of the genome, this leads to developmental disorders and cancer.
Scientists have had a long-standing interest in examining the spatial organisation of the genome in the cell's nucleus, mostly using microscopy techniques. Recent advances in genomic techniques to measure the 3D organisation of the genome have allowed for an increased resolution of this organisation. However, when the genome gains 3D organisation during development is not known. Now, using early development fruit fly embryos and genomic techniques to measure 3D genome organisation, scientists of the Research Group 'Regulatory Genomics' at the Max Planck Institute for Molecular Biomedicine in Muenster have shown that the 3D organisation of the genome emerges when the early embryo switches on its own genetic programme.
A common image of the cell's genetic material is the rod-like structures of mitotic chromosomes. However, those only exist while cells are undergoing cell division. The rest of the time, the genetic material is found in the form of chromatin fibres - DNA molecules densely wrapped around histone proteins - which are less densely compacted than mitotic chromosomes and occupy the nuclear space.
"One could think of this as a plate of spaghetti, where each individual piece of pasta would correspond to the DNA molecule in each chromosome", says Juanma Vaquerizas, head of the Max Planck Research Group 'Regulatory Genomics' at the Max Planck Institute for Molecular Biomedicine, who led the study. "A fundamental question in the field was whether each spaghetti would randomly mingle with other pieces of pasta or whether they would occupy a defined space within the plate."
Using microscopy approaches, scientists had determined before that the location of chromatin in the nucleus was not random, and recent advances in our ability to measure chromatin architecture have shown that finer structures, called topologically associating domains (TADs), form part of the basic functional units that determine the 3D organisation of the genome. However, a very puzzling observation has been that when the TAD organisation of the genome is examined in different cell types in an organism or in conserved regions of the DNA between species, this seems to be very similar across samples, despite different parts of the genome being actively used in different cell types. This prompted Clemens Hug and Juanma Vaquerizas to address the question of when during organismal development chromatin architecture is established.
The team turned to early development of fruit flies to perform their experiments. "An amazing feature about fruit fly embryonic development is that upon fertilization, the nuclei synchronously divide every 10-15 minutes for thirteen times without gene activation", says Vaquerizas. Maternally deposited mRNAs and proteins make sure that differentiation and development occur during those initial nuclear cycles. Then, at nuclear cycle 14 - only 2,5 hours after fertilization - the embryonic genome is activated. "Thus, in fruit flies, we can accurately study early chromatin organization at a high temporal resolution", says Vaquerizas.
The choice of organism and its developmental timing proved critical for the researchers' experiments, since this allowed them to examine 3D genome organisation in nuclei at a stage when transcription is naturally not occurring, and by doing so, decouple genome organisation from the effects of transcription.
By using state-of the-art genomic analyses, the scientists were able to study chromatin organization at a very high spatial resolution. Clemens Hug, PhD student and first author of the study, explains the method they used: "The so-called in situ Hi-C technique allows us to accurately identify those parts of the DNA that interact with each other in the three-dimensional nuclear space and the extent of interaction throughout the genome. We are therefore able to capture the 3D organization of the chromatin at a certain time point and can reveal changes in organisation across early development stages." Strikingly, the team found that at early stages of development the genome lacks defined higher-order chromatin organisation, and that 3D architecture progressively emerges in later stages.
"We found that TAD boundaries - defining functionally distinct chromatin units - arise when the first zygotic genes are transcribed. The number of TAD boundaries reaches a plateau when the complete zygotic genome has been activated", says Hug. "These boundaries are occupied by housekeeping genes that are constantly transcribed in all cell types. Once established, these are maintained throughout development." This is an important finding since it helps explain why the TAD organisation of genomes is similar across tissue types and evolutionary conserved regions between species.
However, the scientists could demonstrate that the establishment of TAD boundaries is independent of transcription itself, despite being associated with transcriptionally active regions. "This is of interest since it suggests that the machinery or mechanisms leading to transcription might play a role in TAD boundary establishment", says Hug. The scientists observed that Zelda, a pioneer transcription factor protein that opens the chromatin so that the transcription machinery can access the DNA, is necessary to establish some TAD boundaries. "We therefore think that Zelda and maybe other proteins with a similar function, in concert with RNA Pol II, create the TAD boundaries and thus are responsible for the 3D chromatin architecture", says Hug.
"When the proteins that determine TAD boundaries - and thus are critical for the chromatin architecture - are disrupted, this can result in distinct developmental disorders and cancer", says Vaquerizas. "Our newly gained insights into how the 3D chromatin architecture is established and maintained will thus have a major impact on further studies looking at its impact on gene expression during development and disease."
Explore further: Scientists reveal hidden structures in bacterial DNA
More information: Clemens B. Hug, Alexis G. Grimaldi, Kai Kruse and Juan M. Vaquerizas. Chromatin architecture emerges during zygotic genome activation independent of transcription. Cell 169: 216-228, April 6th, 2017, DOI: 10.1016/j.cell.2017.03.024
Journal reference: Cell
Provided by: Max Planck Society
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Amongst the potential causes for the decline in honey bee colonies, pathogens and parasites of the honey bee, particularly mites, are considered major threats to honey bee health and colonies. Now scientists at the University of Liverpool and Xian Jiaotong-Liverpool University (XJTLU) have sequenced the genome of the bee mite Tropilaelaps mercedesae to assess the interaction between the parasite and host. The results provide resources for control developing gene-based control strategies, determining the weak points for conventional methods, and identifying new targets for biological control.
T. mercedesae is a honey bee parasite prevalent in most Asian countries, and has a similar impact on bee colonies that the globally-present bee mite Varroa destructor has. More, T. mercedesae and V. destructor typically co-exist in Asian bee colonies and with the global trade of honey bees T. mercedesae is likely to become established world-wide.
Dr Alistair Darby, from the Universitys Centre for Genomic Research where said: The genome sequence data and research findings provide useful resources for understanding mite biology and identifying potential gene-based mite control strategies.
Of particular interest, the team found that the mite does not rely on sensing stimulatory chemicals to affect their behaviour, meaning that current control methods targeted to gustatory, olfactory and ionotropic receptors are not effective. The researchers also found that T. mercedesae is enriched with detoxifying enzymes and pumps for the toxic xenobiotics, which means the mite can quickly acquire miticide resistance.
Relevant to this, the researchers investigated the bacteria that infect the bee mite, of which little is known. The scientists discovered that the symbiotic Rickettsiella grylli-like bacteria is commonly present in T. mercedesae and suggest that manipulating this bacteria could help in the development of novel control strategiesin the battle to save bee colonies.
The extent of honey bee colony destruction remains a complex problem, but one that has an extensive impact on crop productivity since honey bees are needed for pollination of a variety of plants. The findings, genome, transcriptome, and proteome data from this T. mercedesae study add an important new resource in the battle to save bee colonies.
Draft genome of the honey bee ectoparasite mite, Tropilaelaps mercedesae, is shaped by the parasitic life history is published in GigaScience.
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