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Category Archives: Transhuman News
Long-frozen DNA shows how humans made horses faster and more likely to get sick – Washington Post
Posted: April 28, 2017 at 2:37 pm
On May 6, at the 143rd Kentucky Derby, 20 thoroughbred horses will gallop along a 1.25-mile stretch. Even the slowest racer should cross the finish line in abouttwo minutes. The thoroughbreds are not onlyquicker than ancient wild horses, they are also remarkably different from the domesticated animals that nomads rode across the Asian steppe just2,300 years ago.
At some point in the pasttwo millennia peanuts on an evolutionary time scale humans transformed their horsesinto equinespeed demons. Selective breedinghad a price, though, beyond $30,000 vials of pedigreed racehorse sperm. Unhelpful mutationsplagued the animals. The current population of domesticated horses is about 55 million, but at some point in their history, their genetic diversity crashed. The Y chromosomes ofall the world's stallions are now quite similar, suggesting that only a relatively few males were the ancestors of today's horses.
[Why these researchers think humans came to North America 130,000 years ago]
Humans have not always bred so selectively, according to a study published in the journal Science on Thursday. Horse domestication began about 5,500 years ago. Ancient equestrians were not interested in superfast animals. They were more interested in diversity and potential, saidLudovic Orlando, a professor of molecular archaeology at the University of Copenhagen'sNatural History Museum of Denmark and an author of the new study.
Orlando and his colleagues sequenced the genomes of 14 ancient horses: one 4,100-year-old mare and 13 stallions, whichdated back 2,700 to 2,300 years. The stallions, ridden by the nomadic Scythians, had genes linked to an array of coat colors and traits associated with endurance or sprinting, as well as many diverse Y chromosomes.
Orlando and his colleagues chose to sequence Scythian stallionsfor several reasons: The animals livedabout halfway through the 5,500-year timeline of horse domestication. The horses also offered a ready supply of genetic material. To honor their royalty, Scythians sacrificed animals from many different tribes and buried the remains in underground chambers in what is now Kazakhstan.
Kazakhstan's permafrost kept ancient DNA fresh. Its like we had a natural freezer waiting for us for 2,300 years, Orlando said. In places, the scientists dug up not just tooth and bone material buthairs. Some horse skulls still wore the decorationstheir owners had created millennia ago.
Scythians had a reputation as bloodthirsty warriors literally. The Greek historian Herodotus wrotethat the Scythian soldier drinks the blood of the first man he overthrows in battle out of a cup made from a humanskull. But skullmugs or no, they were excellent horsemen.They mastered the horse like no others before them, Orlando said.
(The Scythians probably also drank horse milk. DNA analysis of the frozen stallions suggestedthat the Scythians bred some horses for enlarged mammary glands.)
[For some failed racehorses, theres another course to pursue]
Some, but not all, of their horses carried genetic variants seen in today's sprinting horses. Asingle gene mutationcan dictatea horse'sgait how motor neurons connect to muscle tissues allows an animal to amble. Ambling gaits have a four-step pattern, bringing the legs of the same side together for a smoother ride. The scientists could test whether Scythianscared about breeding for a more comfortable ride: The nomads did not.
Among the sacrificed were horses with bay, spotted,chestnut, black and cream-colored coats. The variety of coat colors still found in Kazakhstan today supported what is known as the neural crest hypothesis, Orlando said.
As a rule,domesticated mammals developcoats of varied colors and floppy ears; this is sometimes called the domestication syndrome. In Russia, for instance, a decades-long experiment to tame the fox has produced animalswith droopy ears and shorter, curlier tails. Biologists proposed that a pool of cells called the neural crest, which pops up in animal embryos and turns intotissues like skin and ear cartilage, might explain why different species grow similar traits.
[This 508-million-year-old sea predator had a remarkable mouth]
DNA from the Scythian horses was some of thefirst empirical evidence that supports the neural crest hypothesis, Orlando sad.
What's more, for the first 3,000 years of domestication, horse breeders were able to keep unhelpful mutations at bay. Modern horses have several nasty mutations, Orlando said, thatmake some animals prone to seizures or wounds that won't heal, for instance.
But something happened to horses on the way from the Kazakhsteppe to Churchill Downs: Somehow,breeders swept awayhorse genetic diversity. Orlando istrying to figure out why. He offeredthree likely scenarios for when hyperselective breeding eliminated diversity from the gene pool in the quest for specialized traits.Perhaps it was the fault of the Roman Empire and itshorses. Or perhaps horse breeders in the Middle Ages were highly selective. Or maybe the rise of themodern racehorse in18th-century Britain did the horse genome in.
Orlando is more interested in history than in rewinding the harmful effects of domestication, which he said would be a fruitless effort. We cannot give lessons to modern breeders, Orlando said. Its not like they have a different population to choose from.
And yet the history of horses is no idle thing. It is our history, Orlando argues. I believe horses are the most important domesticated animal in history, hesaid.Without horses, the history of warfare would be different, and therefore the history of humanity.
He cited cavalry, chariots and accomplished equestrians like Alexander the Great who became ancient leaders. Chickens kept us fed, and dogs kept us company. Horses, though, allowedhumans to travel faster and farther, not only spreading our descendants to other lands, but our ideas and cultures, too.
Read more:
In horse communication, twitchy ears may be key
Could ancient horse poop solve a huge historical mystery?
The surprising, adorable thing that goats and puppies have in common
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Long-frozen DNA shows how humans made horses faster and more likely to get sick - Washington Post
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Frozen in time: DNA may ID sailors looking for Northwest Passage in … – Fox News
Posted: at 2:37 pm
Scientists have extracted DNA from the skeletal remains of several 19th-century sailors who died during the ill-fated Franklin Expedition, whose goal was to navigate the fabled Northwest Passage.
With a new genetic database of 24 expedition members, researchers hope they'll be able to identify some of the bodies scattered in the Canadian Arctic, 170 years after one of the worst disasters in the history of polar exploration.
The results were published April 20 in the Journal of Archaeological Science: Reports.
Led by Sir John Franklin, a British Royal Navy captain, the 129-member crew embarked in 1845 in search of a sea route that would link the Atlantic and Pacific oceans. The sailors were doomed after their ships became trapped in thick sea ice in the Canadian Arctic Archipelago in 1846. [In Photos: Arctic Shipwreck Solves 170-Year-Old Mystery]
The last communication, a short note from April 25, 1848, indicated that the surviving men were abandoning their ships the HMS Erebus and HMS Terror just off King William Island and embarking on a harsh journey south toward a trading post on the mainland. None of them seems to have made it even a fifth of the way there.
Over more than a century, search parties and scientists have discovered the remains of several Franklin sailors in boats and makeshift campsites scattered along this route. The bones bear scars of diseases like scurvy. Some even have the signatures of cannibalism,according to one recent study that confirmed the 19th-century reports of Inuit witnesses who had described piles of fractured human bones. Several artifacts from the HMS Erebus, including a medicine bottle and tunic buttons, as well as the ship's bronze bell , have also been uncovered.
In the latest look at the array of bones, a team led by Douglas Stenton of Nunavut's Department of Culture and Heritage, a territory in northern Canada, conducted the first genetic tests on members of the expedition who died following the desertion of the ships.
Stenton and his colleagues were able to get DNA from 37 bone and tooth samples found at eight different sites around King William Island, and they established the presence of at least 24 different members of the expedition. Twenty-one of these individuals had been found at locations around Canada's Erebus Bay, "confirming it as a location of some importance following the desertion of Erebus and Terror," Stenton told Live Science.
The researchers say their results offer a more accurate count of the number of expedition members who died at different locations. A few of the early fatalities were buried at Beechey Island and their frozen remains, which were exhumed by archaeologists in the 1980s, were eerily well-preserved. The bones of the sailors who died after abandoning the ships, however, were much more scattered, dispersed by animal scavenging and human activity.
Stenton said that, in one case, bones from the same individual were found at two different sites about a mile from each other. The researchers think that an 1879 search party most likely found some of the bones, and then carried them to the new site and reburied them.
Stenton and colleagues hope they will eventually be able to use the database to identify the crew members and better reconstruct what happened in the final months of the expedition.
"We have been in touch with several descendants who have expressed interest in participating in further research," Stenton said. "We hope that the publication of our initial study will encourage other descendants to also consider participating."
Four samples in the study were identified as female, which doesn't fit with the picture of an all-male expedition crew. The authors ruled out the possibility that these samples came from Inuit women because the genetic and archaeological evidence associated with these four individuals also suggests they were European. [Tales of the 9 Craziest Ocean Voyages]
"We were surprised by the results for those samples because in planning the analysis it hadn't occurred to us that there might have been women on board," Stenton told Live Science.
Stenton and his colleagues think the most likely explanation for this discrepancy is that ancient DNA studies commonly fail to amplify the Y chromosome (the male sex chromosome) due to insufficient quantity or quality of DNA, which can result in false female identifications of the dead. However, the researchers noted that it wasn't unheard of for women to serve in disguise in the Royal Navy.
"Some of these women were smuggled onboard [the] ship, and others disguised themselves as men and worked alongside the crew for months or years before being detected or intentionally revealing themselves to be female," the authors wrote.
They cited cases such as Mary Anne Talbot, who served on two Navy ships during the Napoleonic wars of the 18th century before being found out after being wounded. Unfortunately, Stenton said he doesn't think it will be possible to definitively say whether the four Franklin samples are really just false results, but his team concluded that it would have been very unlikely for so many women to be serving secretly on this voyage.
Original article on Live Science.
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Frozen in time: DNA may ID sailors looking for Northwest Passage in ... - Fox News
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DNA leads to arrest in 1976 fatal stabbing of Houston man – CBS … – CBS News
Posted: at 2:37 pm
David Lee Edds being taken into custody on April 27, 2017
U.S. Marshals Hattiesburg
HOUSTON- Investigators say a review of DNA evidence in the 1976 fatal stabbing of a Houston man has led to an arrest nearly 41 years later.
According to the Harris County Sheriff's Office, David Lee Edds, 61, was taken into custody by U.S. Marshals after being found camping in a "wooded area" outside Waynesboro, Mississippi on Thursday morning.
Rene Anthony Guillotte was last seen leaving a bar on May 11, 1976. His naked body was found on a road early that morning.
The sheriff's statement says cold case investigators in 2014 began reviewing the death and linked DNA evidence to Edds, who lived near the crime scene. Sheriff's spokesman Thomas Gilliland says Edds' DNA was in a law enforcement database. According to the statement, investigators interviewed Edds in early 2017 and he "denied knowing the victim, being at the crime scene or having any knowledge of the murder. He could offer no explanation as to why he was linked to the crime scene and to the victim by physical evidence."
According to Gilliland, Edds fled Harris County last week after being indicted by a grand jury. He had family in the Waynesboro area where he was found.
Edds was convicted in 1981 of manslaughter and sentenced to 10 years. He also has convictions for burglary, robbery, drugs, weapons and parole violation.
2017 CBS Interactive Inc. All Rights Reserved. This material may not be published, broadcast, rewritten, or redistributed. The Associated Press contributed to this report.
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DNA leads to arrest in 1976 fatal stabbing of Houston man - CBS ... - CBS News
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Gareon Conley to Meet with Police, Give DNA Sample in Rape Investigation – Bleacher Report
Posted: at 2:37 pm
Ohio State cornerback and NFL draft prospect Gareon Conley will be interviewed by police on Monday and give a DNA sample, according toAdam Ferriseof Cleveland.com.
Conley is under investigation after being accused of sexually assaulting a woman in a hotelon April 9, though he has not been charged at this time.
The woman accusing Conley of sexual assault told police she met Conley at the elevator of the Westin Hotel on the night in question and went to a room with him. She said he asked her if she wanted to participate in a foursome but she declined, instead preferring to watch another couple have sex.
She said that Conley instead "grabbed her, ripped her pants off and raped her" before kicking her out of the hotel room, per Ferrise.
Conley's attorney, however, says Conley met the woman at the Barley House on West 6th Street that evening andseveral people told the bar's owner, Bobby George, that they saw the woman at the bar and saw her leave with Conley. George, however, was not at the bar at the time, per Ferrise.
Two of Conley's friends told police that nothing happened between the woman and Conley in the hotel room and she grew angry when he asked her to leave.
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Gareon Conley to Meet with Police, Give DNA Sample in Rape Investigation - Bleacher Report
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Cambridge Epigenetix Licenses DNA Methylation IP from Boston Children’s Hospital – Genetic Engineering & Biotechnology News
Posted: at 2:37 pm
Cambridge Epigenetix said today it has licensed from Boston Childrens Hospital intellectual property related to profiling and altering DNA methylation, technologies that the company said could improve diagnoses and treatment of cancer and other diseases.
Through an exclusive license agreement whose value was not disclosed, Cambridge Epigenetix said it strengthened its position in epigenetic biomarker discovery by licensing numerous epigenetic techniques used in laboratories. The techniques include the specific and unbiased enrichment of 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) via enzymatic glucosylation and the use of ten-eleven translocation (TET) enzymes for targeted epigenetic engineering.
The IP is based upon work by the research group of Anjana Rao, Ph.D., a researcher specializing in immunology and cancer epigenetics who was formerly with Boston Children's Hospital and is now with the La Jolla Institute for Allergy and Immunology. At the Institute, she is a professor in the Division of Signaling and Gene Expression, and the Pfizer Endowed Chair in Cancer Immunology and Oncology Dr. Rao is also a member of Cambridge Epigenetixs Scientific Advisory Board (SAB).
Dr. Raos research group was the first to identify 5hmC as an important biomarker for cancer diagnosis that cannot be measured by traditional epigenetic sequencing methodologies. She also determined that the TET family of enzymes generate 5hmC from 5mC and are key regulators of cellular differentiation that are often mutated in cancer.
The continued study of 5hmC and other oxidized methylcytosines is essential to enhance our understanding of human biology and health, Dr. Rao said in a statement. I am delighted that Cambridge Epigenetix has chosen to license this technology and, through my role on the SAB, I will continue advising them on maximizing its application.
The IP covered by the license includes the specific and unbiased enrichment of 5mC and 5hmC via enzymatic glucosylation and the use of TETs for targeted epigenetic engineering. The technologies are intended to robustly profile methylation and hydroxymethylation in limited amounts of DNA (<10 ng), a quantity ideal for clinical samples.
By gaining access to the IP, Cambridge Epigenetix said, it can identify epigenetic biomarkers for noninvasive cancer diagnosis and other clinical applications and build on offerings that include its TrueMethyl oxidative bisulfite sequencing kits for 5mC and 5hmC detection.
"5hmC is fundamentally linked to the expression of genes and to the identity of cells and tissue. This makes it a highly important epigenetic marker with the potential to improve patient outcomes through the early diagnosis and treatment of diseases such as cancer, added Cambridge Epigenetix CEO Jason Mellad, Ph.D. This is a tremendous opportunity for Cambridge Epigenetix, enabling the company to utilize and offer our partners the most advanced epigenetic biomarker discovery technologies available in our key focus areas of oncology and liquid biopsy.
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Cambridge Epigenetix Licenses DNA Methylation IP from Boston Children's Hospital - Genetic Engineering & Biotechnology News
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How Domestication Altered The Horse Genome – Forbes – Forbes
Posted: at 2:37 pm
Science Daily | How Domestication Altered The Horse Genome - Forbes Forbes A new study published today reveals the suite of traits that ancient nomadic peoples selected to develop the type of horse that best fit their purposes. Scythian horse breeding unveiled: Lessons for animal domestication ... Ancient Ritually Sacrificed Stallions Reveal How Humans Changed ... |
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With the barley genome sequenced, better beer and whiskey is on … – New Atlas
Posted: at 2:37 pm
After 10 years of study, the barley genome has been fully sequenced, which could lead to better beer and single malt Scotch whiskey (Credit: aaron007/Depositphotos)
Sequencing the entire genome of an organism is no easy feat, but the benefits can be as important as saving species from the brink of extinction, fighting cancer, getting rid of pests and now, brewing better booze. After a decade of study, an international team of scientists has finally unraveled the genome of barley, an achievement that could not only lead to tastier beer and whiskey, but a better understanding of other staple food crops.
Showing up in your cereal in the morning, your sandwich at lunch, and your beers or single malt Scotch whiskey after work, the humble barley grain is one of the most widely grown and consumed crops on Earth. Its importance stretches back as far as 10,000 years, and improving our understanding of it means we can grow varieties more selectively to help feed (and intoxicate) the growing population.
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While it might look like a pretty simple organism, barley has some 39,000 genes to its name almost twice as many as there are in the human genome. To make the job even more challenging, 80 percent of the genes are arranged in highly repetitive sequences, which makes pinning down their precise locations in the genome extremely difficult.
As a result, it took 10 years for a team of 77 scientists to piece together the plant's entire sequence. Spearheaded by the International Barley Genome Sequencing Consortium, the project involved researchers from across the globe, including the US, UK, Australia, Germany, China, Czech Republic, Denmark, Finland, Sweden and Switzerland.
Many barley products rely on the grains being malted first, which means they're soaked in water to start the germination process, then interrupted and dried out. The amylase proteins that brings out then convert starch into sugars, which yeast can feed on to ferment the mix into alcohol.
To their surprise, the researchers found that there were far more genes that encoded for amylase than they expected. The completed sequence can also help improve the overall quality of barley crops, by identifying parts of the genome that might be holding breeders back, and showing them which genes they should be selecting for. The study could also prove to be a solid foundation to better understand related crops, like rice and wheat.
"This takes the level of completeness of the barley genome up a huge notch," says Timothy Close, one of the study's many authors. "It makes it much easier for researchers working with barley to be focused on attainable objectives, ranging from new variety development through breeding to mechanistic studies of genes."
The research was published in the journal Nature.
Source: University of California, Riverside
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With the barley genome sequenced, better beer and whiskey is on ... - New Atlas
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Adam and the Genome Part Twelve – Patheos (blog)
Posted: at 2:37 pm
By historical Adam and Eve I simply mean real people in space and time, the progenitors of Gods people who were the sinners in question that set in motion the train of murder and death and iniquity that followed, no sooner than they stepped outside the garden (see the story of Cain and Abel). I do not think it is adequate to suggest that the writers of the NT or for that matter of the intertestamental period were simply referring to Adam and Eve as archetypal or literary figures in a story.
No, they believed these folks actually existed on planet earth long long ago. Indeed, so much did they take that for granted, that they argued from that basis to be able to say other things about Adam and Eve. I find weird the argument of John Walton cited on p. 109 that says because Christ is called the last Adam, since he was not the last biological specimen, one cannot conclude that when Paul refers to the first Adam he means the first biological specimen. Paul is talking about two founders of the race of Gods people the first one, who is the progenitor of Gods people and the last one who will also be the progenitor of Gods people. Biology is neither implied nor denied by this rhetorical comparison, for either Adam.
The chapter about the Twelve major theses, which begins on p. 111 makes up the bulk of Scots main argument. It begins with a very ironic quote from Walter Brueggemann on p. 112. Speaking about the theologians who wrote Gen. 1-11 he says of them they resist a scientific view of creation which assumes the world contains its own mysteries and can be understood in terms of itself without any transcendent referent. Indeed its a pity that the first half of this book didnt approach the matter more like the writers of Gen. 1-11. This quote accurately describes what we find in this book in the discussion on genetics.
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Dog Genome Project Reveals Secrets of Canine Family Tree – Smithsonian
Posted: at 2:37 pm
smithsonian.com April 27, 2017
Researchers from the Dog Genome Project at the National Institutes of Health have released the most detailed canine family tree to date, creating a timeline of when and where dogs from 161 breeds emerged, reports Maggie Fox at NBC News. The researchers compiled the data by sequencing and comparing the genomes of 1,346 individual dogs over 20 years.
The new family tree isnt just a factoid for the kennel club. According to a press release, it has implications for archeology and human health as well. The study, published this week in the journal Cell Reports, suggests thatthe oldest dog breeds are varieties that served a specific function like herding dogs and pointers.
According to the results, herding dogs were bred independently in various parts of Europe with lineages tracing to the United Kingdom, northern Europe and southern Europe. In the past, reports Erin Ross at Nature, researchers had trouble mapping out the lineages of herding dogs, believing they came from a single source. In retrospect, that makes sense, says Elaine Ostrander, an author of the study. What qualities youd want in a dog that herds bison are different from mountain goats, which are different from sheep, and so on.
One of the most interesting finds was that some breeds from Central and South America like the Peruvian Hairless Dog and the Xoloitzcuintle possibly descended from canines that crossed the Bering land bridge with humans thousands of years ago. While there is some archeological evidence that dogs first entered the New World at that time, the study offers potential genetic confirmation. What we noticed is that there are groups of American dogs that separated somewhat from the European breeds, study co-author Heidi Parker of the NIH says in the press release. Weve been looking for some kind of signature of the New World Dog, and these dogs have New World Dogs hidden in their genome.
The study will also give researchers insight into which genes and mutations are associated with human diseases. As Fox reports for NBC, all domesticated dogs are part of the same species, Canis familiaris, and have the same genetic material. There are just a tiny fraction of changes in the genome that separate a Chihuahua from a Great Dane. We have a yellow brick road for figuring out how mutations move around the dog world. We recognize that everything humans get, dogs getepilepsy, cancer, diabetes, heart disease, Ostrander tells Fox. She points out that some diseases are more prevalent in certain breeds, like epilepsy in beagles. We can actually trace diseases as they move around the dog breed population.
The study suggests there were likely two intensive periods of dog breed diversification, writes Ross. The first happened in hunter-gatherer times when dogs were bred for their skills. During the second period, dogs were bred more frequently for their looks. Known as the "Victorian Explosion,"this period was whenmost modern breeds developed.
The canine family tree, however, is not finished. The team has sequenced less than half of the 400 or so recognized dog breeds in the world. The researchers tell Fox they haunt dog shows and Frisbee dog competitions looking for breeds they have not yet sampled. A list of hard-to-find breeds they are currently searching for is on the Dog Genome Project website. It's worth taking a look, perhaps your pup could be one of the missing branches on the canine family tree.
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Dog Genome Project Reveals Secrets of Canine Family Tree - Smithsonian
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Adam and the Genome Part Eleven – Patheos (blog)
Posted: at 2:37 pm
In regard to point 5) (see the previous post) I agree with Scot that I dont think the later Christian notion of seminal transmission of a sin nature from Adam is a necessary conclusion from what the Bible says. It is the curse that affects the whole human tribe, not Adams sin nature. 6) since all have sinned and lack Gods glory now, it is not necessarily the case that without the historical Adam we dont need the Gospel of salvation, but I would say that Adams sin is the presenting cause which led to the curse which in turn led to fallen human beings.
It is hard for me to doubt that the sorry history of the human race, full of wickedness, bloodshed, hatred, wars etc. is not a profound testimony to sin and fallenness. And besides the Psalmist say in Ps. 51.5- surely I was sinful from the time my mother conceived me. That is hardly a statement about volitional sin after birth. I suspect as well that Pauls language about flesh and his discussion in Rom. 7.14-25 that people can know better, but apart from Christ cannot do the Law, should have some bearing on whether weve all fallen and cant get up without redemption.
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