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Category Archives: Transhuman News

Newly-published spinach genome will make more than Popeye … – Phys.Org

Posted: May 28, 2017 at 7:15 am

May 24, 2017 Spinach plant, Castelltallat, Catalonia. Credit: Victor M. Vicente Selvas / public domain

"I'm strong to the finich, 'cause I eats me spinach!" said Popeye the Sailor Man.

While you may not gulp spinach by the can-fuls, if you love spanakopita or your go-to appetizer is spinach artichoke dip, then you'll be excited to know that new research out of Boyce Thompson Institute (BTI) will make it even easier to improve this nutritious and delicious, leafy green.

Today in Nature Communications, researchers from BTI and the Shanghai Normal University report a new draft genome of Spinacia oleracea, better known as spinach. Additionally, the authors have sequenced the transcriptomes (all the RNA) of 120 cultivated and wild spinach plants, which has allowed them to identify which genetic changes have occurred due to domestication.

"The spinach genome sequence and transcriptome variants developed in this study provide a wealth of valuable information that can be used to breed spinach with better disease-resistance, higher yield and better quality," asserted Zhangjun Fei, the project's lead researcher from BTI.

Better breeding for stronger spinach

Spinach, which is native to central Asia, is now cultivated worldwide, with a reported annual production of 24.3 million tons in 2014. Since it was first domesticated, gardeners and breeders have improved many agronomically important traits, such as leaf quality and nutrition, and over time these improvements have re-shaped the spinach genome. In turn, breeders today can use genomic information to speed up improvements, which is especially important for combatting significant diseases, like downy mildew.

Known as the 'late blight' of spinach, the downy mildew disease has devastated crops throughout California, and has recently popped up in Upstate New York. Armed with a better understanding of the spinach genome, the researchers have identified several genes that may confer resistance to the downy mildew pathogen. Once identified in a resistant variety of spinach, such genes could be quickly transferred to other, possibly more nutritious varieties, boosting their immune systems to fight this disease while still maintaining marketable traits.

Insights into spinach domestication

Of particular interest to the researchers is the discovery that the genomes of cultivated spinach varieties are not too different from their wild progenitors. When a plant is domesticated, its genome will evolve over centuries of selection. In many cases, it gets forced through a bottleneck of genetic changes necessary for cultivation, creating a very different plant from that which was first brought out of the wild. A great example is the comparison of maize (corn) to its ancestor, teosinte.

"By analyzing transcriptome variants of a large collection of cultivated and wild spinach accessions, we found that unlike other vegetable crops such as tomato and cucumber, spinach has a weak domestication bottleneck," explained first author, Chen Jiao.

This was great news because it means there is still much room for spinach improvement, but it also made it tougher to pinpoint genomic markers that could speed up the breeding process. Nonetheless, the team identified many regions in the genome directly attributable to the domestication process, that could be possibly linked to valuable traits, such as bolting, leaf number, and stem length

When asked for her favorite spinach recipe, first author Chen Jiao replied, "I usually make spinach salad for my family twice a week. It is very nutritious and easy to make. I just throw a handful of baby spinach, some croutons and fried bacon, and boiled eggs in a bowl and then drizzle all with bottled dressing."

So the next time you eat a luscious, green spinach salad, thank a scientist for keeping you healthy and strong!

Explore further: Dole recalls some spinach after salmonella found in sample

More information: Nature Communications (2017). DOI: 10.1038/NCOMMS15275

Dole Fresh Vegetables says it's recalling some of its bagged spinach distributed in 13 states as a precaution after a random sample tested positive for salmonella.

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Newly-published spinach genome will make more than Popeye ... - Phys.Org

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Genome Analysis Toolkit 4 (GATK4) released as open source … – Phys.Org

Posted: at 7:15 am

May 25, 2017 Credit: Susanna M. Hamilton, Broad Communications

The Broad Institute of MIT and Harvard will release version 4 of the industry-leading Genome Analysis Toolkit under an open source software license. The software package, designated GATK4, contains new tools and rebuilt architecture. It is available currently as an alpha preview on the Broad Institute's GATK website, with a beta release expected in mid-June. Broad engineers announced the upgrade, as well as the decision to release the tool as an open source product, at Bio-IT World today.

The new version is built on a new architecture, allowing significant streamlining of individual tools and support for performance-enhancing technologies such as Apache SparkTM. This new framework brings improvements to parallelization, capitalizing on cloud deployment and making the process of analyzing vast amounts of genomic data easier, faster, and more efficient.

"We wanted to remove traditional barriers of scale while offering the same high level of data quality our users expect," said Eric Banks, Senior Director of Data Sciences and Data Engineering at Broad and a creator of the original GATK software package. "Thanks to the rapid adoption of cloud computing, researchers can finally do away with many of the infrastructure-related complications that have hampered progress, especially at smaller institutions and startups."

Today, more than 45,000 academic and commercial users worldwide rely on the GATK, running millions of analyses. The GATK is the industry standard for identifying SNPs and indels in germline DNA and RNAseq data. In addition to improving the performance of these established tools, GATK4 extends this scope of analysis to include copy number and structural variation, for both germline and somatic research applications.

Fully open source software

GATK4 will be released as a fully open source product, thanks in part to a collaboration between Broad Institute and Intel Corporation to advance high-performance analytics so researchers can study massive amounts of genomic data from diverse sources worldwide.

At the Intel-Broad Center for Genomic Data Engineering, software engineers and researchers have spent the last several months building, optimizing, and widely sharing new tools and infrastructure to help scientists integrate and process genomic data. GATK4 has benefited from this collaboration, which has helped engineers optimize best practices in hardware and software for genome analytics to make it possible to combine and use research data sets that reside on private, public, and hybrid clouds.

"Releasing GATK4 as open source was the obvious next step for our team," said Geraldine Van der Auwera, Associate Director of Outreach and Communications within the Data Science and Data Engineering group at the Broad Institute. "We believe it's the most effective way to support the community, and we hope it continues to grow, innovate, and help researchers make insights that are essential for future human health breakthroughs." "It is critical for progress in biomedicine that the software we use for analysing the genomes of millions of people is robust and well understood," said Ewan Birney, Director of EMBL-EBI and Chair of the Global Alliance for Genomics and Health (GA4GH). "Releasing GATK software with an open source license directly supports open innovation, data re-use and data re-analysis in the global biomedical community."

"The GATK tools are crucial for both germline and cancer analyses," said Robert L. Grossman of the University of Chicago Department of Medicine and an expert in biomedical informatics. "Releasing GATK4 as an open source software package will increase adoption, and benefit the community."

"Open sourcing the GATK is a big deal for open genomics, and for open science in general," said Jeremy Freeman, manager of computational biology at the Chan Zuckerberg Initiative (CZI). "Not only does it make this critical tool available to as broad as possible an audience for use, reuse, inspection, and contributionit provides a powerful example to the community for how an existing project can embrace open source."

"Open source code is a foundation of efficient biomedical research," said Brad Chapman, a research scientist at the Harvard T.H. Chan School of Public Health. "It enables reproducibility, reuse and remixing by removing barriers for sharing and distributing analyses. The Broad Institute's GATK team leads in the development of scalable, sensitive and specific variant calling algorithms, and open sourcing GATK4 will allow frameworks like Blue Collar Bioinformatics to make these methods broadly available to the scientific research community."

"Cloudera has always been a supporter and believer in the power of open source code," said Tom White, data scientist at Cloudera and a member of the Apache Hadoop PMC. "We've been excited to contribute to the GATK codebase, to make it run smoothly on Apache Spark and Cloudera. This next phase of the GATK, powered by Spark and open source software, will expand access and improve collaboration among genomic data scientists."

"The open sourcing of GATK4 is a great step for genomics, allowing for scalability and performance gains to be openly available to the research, biotech and pharmaceutical communities," said Jason Waxman, corporate vice president and general manager of Data Center Solutions at Intel. "GATK4, when run on Intel's new reference architecture, can achieve a 5X speed-up compared to earlier versions of the software."

"We at Google are excited to see this new release," said Ilia Tulchinsky, Google Cloud Healthcare Engineering Lead. "We've been collaborating with the Broad Institute for the past three years to enhance genomic processing on Google Cloud Platform. As a strong supporter for open source technology, we believe that making GATK available this way will facilitate its use by genomic scientists everywhere. As fellow collaborators with Intel, we particularly look forward to enabling researchers to run GATK4 on Google Cloud using the upcoming Intel Xeon processor Scalable family."

"The GATK is one of the most widely utilized software packages in the life sciences, and our team has worked very productively with Broad to accelerate it for use on Azure," said Geralyn Miller, Director, AI & Research, Microsoft. "This new model will greatly facilitate this effort going forward, and we are excited to continue and expand our efforts around GATK on Azure."

"With the open source launch of GATK4, there is an opportunity to create a global community that can collaborate together and advance the state of art in bioinformatics," said Hong Tang, chief architect at Alibaba Cloud, the cloud computing arm of Alibaba Group. "We look forward to closely working with Broad Institute in bringing the cloud-based GATK service to genomics customers in China, as well as in ongoing GATK research and development."

In addition to offering GATK4 as an open source toolkit, Broad Institute will continue to offer user support, training, and outreach on its popular user support forum. GATK4, like many of the Broad Institute's genome analysis tools, will be available through the Broad Institute's cloud based analysis platform, FireCloud.

Explore further: Google joins effort to boost genomics research

Google announced Wednesday it was teaming up with university scientists to use its computing platform to accelerate efforts in genomics research.

In a sign of the growing importance of the Internet "cloud," software group Cloudera said Monday it raised a whopping $900 million to expand its big data corporate services.

Microsoft has joined the Linux Foundation, the latest sign that the software giant is embracing open-source technologies it formerly treated with hostility.

Cloud computing is a more efficient and cheaper alternative for researchers wanting to access and analyse large amounts of human genomic data, a local study has found.

Apple today announced that its Swift programming language is now open source. As an open source language, the broad community of talented developersfrom app developers to educational institutions to enterprisescan contribute ...

Judging from technology-watching sites, Intel has something to worry about and it involves a rather well known place on the technology map called Redmond, Washington. Look for the sign that says Microsoft. There.

There are significant gaps in our knowledge on the evolution of sex, according to a research review on sex chromosomes from Lund University in Sweden. Even after more than a century of study, researchers do not know enough ...

(Phys.org)Eusocial insects are predominantly dependent on chemosensory communication to coordinate social organization and define group membership. As the social complexity of a species increases, individual members require ...

Scientists using a high-resolution global climate model and historical observations of species distributions on the Northeast U.S. Shelf have found that commercially important species will continue to shift their distribution ...

If you open Google and start typing "Chinese cave gecko", the text will auto-populate to "Chinese cave gecko for sale" just US$150, with delivery. This extremely rare species is just one of an increasingly large number ...

Plant scientists at the University of Cambridge have found a plant protein indispensable for communication early in the formation of symbiosis - the mutually beneficial relationship between plants and fungi. Symbiosis significantly ...

Almost 150 years after Charles Darwin first proposed a little-known prediction from his theory of sexual selection, researchers have found that male moths with larger antennae are better at detecting female signals.

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Risankizumab Treats Psoriasis More Effectively Than Other Antibody Drug – Medical News Bulletin

Posted: at 7:13 am

A recent randomized phase II clinical trial demonstrates that risankizumab treats psoriasis, a chronic immune-mediated inflammatory skin disease, more effectively than ustekinumab.

Psoriasis, a chronic immune-mediated inflammatory skin disease, affects 2% of adults and is associated with a poor quality of life, obesity, hypertension, diabetes, hypercholesterolemia, and metabolic syndrome. Researchers suggests that interleukin-23 (IL-23), composed of a p19 and p40 subunit, plays a significant role in the disease by inducing and maintaining inflammatory cells. Current strategies include monoclonal antibodies aimed at the different subunits of interleukin-23, including ustekinumab and risankizumab. Ustekinumab targets the p40 subunit, which is also found in IL-12, and thus acts against both IL-23 and IL-12. In contrast, risankizumab only targets the p19 subunit and selectively inhibits IL-23 activity. Clinical studies have shown that both drugs are safe, well-tolerated, and effective in treating psoriasis patients.

A recent randomized phase II clinical trial compared the efficacy, onset, and duration of clinical response between the two drugs in patients with moderate-to-severe psoriasis. Patients were randomly assigned to receive either a single 18-mg dose of risankizumab at week 0, a 90-mg or 180-mg dose of risankizumab at week 0, 4, and 16, or a dose of ustekinumab at week 0, 4, and 16. Patients were subsequently followed for 32 weeks after the final injection (total trial period of 48 weeks). The primary endpoint was a 90% or greater reduction from baseline in the PASI or Psoriasis Area Severity Index, which is an evaluation of erythema (redness), scaling, and percentage of body-surface area affected. In addition, the authors investigated safety end points including severe and moderate adverse events.

At the end of the study, a 90% or greater reduction in PASI was observed in 73% of patients in the 90-mg risankizumab group and 80% of patients in the 180-mg risankizumab group, compared with only 40% of patients who received ustekinumab. This indicates that a 90 and 180-mg dose of risankizumab is more effective in treating psoriasis than ustekinumab. The authors also found that the onset of risankizumab was earlier than ustekinumab, and the benefits were sustained for longer. Also, patient reports and skin biopsies further suggest that risankizumab was more effective in treating psoriasis and its associated morbidities than ustekinumab.

In conclusion, the randomized phase II clinical trial demonstrates that risankizumab is superior to ustekinumab in treating psoriasis and its associated morbidities. The onset and duration of beneficial effects are more profound and longer with risankizumab treatment. Although two patients developed basal-cell carcinoma and one had an adverse major cardiac event with risankizumab; the study had a small sample size and short duration, making it difficult to assess safety profiles. Nonetheless, the study suggests that selective blockade of IL-23, via p19 subunit inhibition, is more effective in treating psoriasis than inhibition of both IL-23 and IL-12. Future studies are required to confirm these results, and to better assess the safety profile of risankizumab.

Written By:Haisam Shah, BSc

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Risankizumab Treats Psoriasis More Effectively Than Other Antibody Drug - Medical News Bulletin

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Promising Results for Drug to Fight Arthritis Linked to Psoriasis … – Arizona Daily Star

Posted: at 7:13 am

FRIDAY, May 26, 2017 (HealthDay News) -- A new drug might help ease the pain and disability of a form of arthritis often linked to psoriasis.

According to Stanford University researchers, psoriatic arthritis is an inflammatory joint disorder tied to an out-of-control immune response. The disease affects about one in every 200 people and is often accompanied by the autoimmune skin disorder psoriasis.

Psoriatic arthritis typically arises after the age of 30 and can bring stiffness, pain and swelling of the joints, leading to real disability if treatments don't help.

The new study focused on more than 300 adult patients across 10 countries. These patients were no longer seeing an effect from standard biologic drugs or had never experienced a benefit in the first place.

"Only about half of psoriatic arthritis patients who are given TNF inhibitors get better," study lead author Dr. Mark Genovese said in a Stanford news release.

So, his team tried out a newer drug called Taltz (ixekizumab), already approved to fight psoriasis. The study was funded by the drug's maker, Eli Lilly & Co.

Patients were randomly assigned to receive injections of either Taltz or an inactive placebo. Over 6 months, about one-third got Taltz injections every two weeks, another third received the placebo every two weeks, while the remaining third received alternate injections of Taltz and the placebo.

More than half (53 percent) of those treated with the drug experienced at least a 20 percent reduction in the number of tender and swollen joints, compared to about 20 percent of those receiving the placebo, said Genovese. He's a professor of immunology and rheumatology at Stanford University Medical Center.

One expert in psoriatic arthritis was encouraged by the findings.

Taltz "is another new option for patients with psoriatic arthritis," said Dr. Waseem Mir, a rheumatologist at Lenox Hill Hospital in New York City. "The data shown in this article supports that certain patients who do not do well with other biologics that are in the market for psoriatic arthritis will now have another option for treatment of their painful disease," he said.

One potential side effect of these immune-focused drugs is a heightened vulnerability to infectious disease. However, Genovese said there was little difference in this regard between people taking Taltz and those on a placebo.

The study was published online May 24 in The Lancet.

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Promising Results for Drug to Fight Arthritis Linked to Psoriasis ... - Arizona Daily Star

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Open-access genetic screening for hereditary breast cancer is … – Medical Xpress

Posted: at 7:13 am

May 27, 2017 Micrograph showing a lymph node invaded by ductal breast carcinoma, with extension of the tumour beyond the lymph node. Credit: Nephron/Wikipedia

Ashkenazi Jewish women are known to have a predisposition to the inherited breast cancers BRCA1 and BRCA2, but currently genetic testing in this group is limited to women affected by breast and ovarian cancers and those who are unaffected but have a family history of the disease.

Ms Sari Lieberman, a genetic counsellor at the Shaare Zedek Medical Centre, Jerusalem, Israel, will tell the annual conference of the European Society of Human Genetics tomorrow (Sunday) that offering open-access BRCA testing to Ashkenazi women unaffected by cancer, regardless of their family history, enables the identification of carriers who would otherwise have been missed. Carrying one of the mutations for the BRCA genes means that women affected have a 50-80% risk of developing breast cancer and a 20-50% risk for ovarian cancer.

"We knew that half of these carriers have no family history of cancer, and therefore would not have been identified had the test been offered on the current personal and family history criteria," she says. "As a genetic counsellor, it is frustrating and saddening to see the results of this policy, where patients are often only identified as BRCA carriers once they have been diagnosed with cancer."

The researchers streamlined the pre-test process so that traditional genetic counselling, which can be time-consuming and difficult, was excluded. Instead they provided written information about the BRCA genes, the genetic test, and about the implications of being a carrier.

"Current strategies for testing focus on women who are 50 and older, which is not the optimal age for effective prevention. In order to address this, we would like to continue this study and look for other approaches that could include younger women," says Ms Lieberman.participants in the study either referred themselves or were recruited by health professionals. Two-year follow up of the 1771 women tested included looking at psychosocial outcomes and health behaviours. Both groups reported a high level of satisfaction (94%) and low stress. Those who had referred themselves tended to be more knowledgeable about breast cancer issues than those who were recruited.

"Among the 25 women carriers we identified, 94% expressed satisfaction and 92% endorsed the idea of population screening. Their stress was understandably higher, but it declined over time, and their knowledge was greater than in non-carriers. All of them had breast surveillance, and three underwent risk-reducing bilateral mastectomy. Of those aged over 40, fifteen out of a total of 16 had their ovaries and Fallopian tubes removed in order to reduce risk," Ms Lieberman reports.

The researchers say that their study provides convincing evidence that open access genetic testing overcomes major barriers; not just lack of family history, but also referral and bureaucratic barriers, and that it is acceptable to those likely to be affected and their families.

"We were concerned that 'low risk' participants, with no family history, might not be able to cope with being offered BRCA testing and particularly with positive test results. We also worried that being found not to be a carrier might provide false reassurance and cause women to think they had no cancer risk and therefore avoid standard surveillance. We were pleasantly surprised on both counts," Ms Lieberman will say. In fact, mammography screening rates did not decline post-test in non-carriers, and even increased in some.

Falling prices for genetic sequencing and new techniques to avoid evaluating irrelevant gene variants will most likely make mutation screening available to wider populations in the near future. "We believe that our results are useful and highly relevant for other populations. On a personal note, I hope that this new approach means that one day I will not have to counsel someone with no family history and therefore no awareness of increased risk who says to me that she only wished she had known before," Ms Lieberman will conclude.

Chair of the ESHG conference, Professor Joris Veltman, Director of the Institute of Genetic Medicine at Newcastle University, Newcastle, United Kingdom, said: "This important study highlights the importance of population-wide genetic screening to identify women at risk of developing breast and ovarian cancer because of a genetic predisposition. The study also showed that most people cope very well with this genetic information; carriers of these mutations undertake breast cancer surveillance, whereas non-carriers are aware they can still develop breast cancer.''

Explore further: Significant increase in number of women tested for BRCA gene, but many high-risk patients still missing out

Discovery of the BRCA genetic mutation in the mid-90s represented a breakthrough in breast and ovarian cancer prevention. About 5-10% of breast cancer cases and 10-18% of ovarian cancer cases can be attributed to two BRCA ...

Research looking at genomic data from women with a genetic risk for breast cancer, who may never develop cancer, found their cancer-free state may be related to a second genetic variation. Researchers at the George Washington ...

Professor Kelly Metcalfe, of U of T's Lawrence S. Bloomberg Faculty of Nursing, is leading the charge against hereditary breast and ovarian cancers by helping establish the standard protocol for addressing cancers associated ...

The genes BRCA1 and BRCA2 play a significant role in hereditary breast and ovarian cancers. Recent media attention has focused on American actress Angelina Jolie's decision to have her ovaries and fallopian tubes surgically ...

(HealthDay)The U.S. Preventive Services Task Force (USPSTF) recommends that BRCA1 and BRCA2 genetic testing be limited to women whose family histories are associated with an increased likelihood of having BRCA mutations.

Women who are members of families with BRCA2 mutations but who test negative for the family-specific BRCA2 mutations are still at greater risk for developing breast cancer compared with women in the general population, according ...

Ashkenazi Jewish women are known to have a predisposition to the inherited breast cancers BRCA1 and BRCA2, but currently genetic testing in this group is limited to women affected by breast and ovarian cancers and those who ...

Melanoma is a particularly difficult cancer to treat once it has metastasized, spreading throughout the body. University of Illinois researchers are using chemistry to find the deadly, elusive malignant cells within a melanoma ...

Earlier this week, for the first time, a drug was FDA-approved for cancer based on disease genetics rather than type.

A team led by Johns Hopkins researchers has discovered a biochemical signaling process that causes densely packed cancer cells to break away from a tumor and spread the disease elsewhere in the body. In their study, published ...

Swiss scientists from the University of Geneva (UNIGE), Switzerland, and the University of Basel have created artificial viruses that can target cancer. These designer viruses alert the immune system and cause it to send ...

All cancer tumors have one thing in common - they must feed themselves to grow and spread, a difficult feat since they are usually in a tumor microenvironment with limited nutrients and oxygen. A study at The University of ...

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In The Age Of Digital Medicine, The Humble Reflex Hammer Hangs On – WXXI News

Posted: at 7:13 am

Receiving a diagnosis in 2017 at least one made at a medical center outfitted with the latest clinical gadgetry might include a scan that divides your body into a bread loaf of high-resolution digital slices. Your DNA might be fed through a gene sequencer that spits out your mortal code in a matter of hours. Even your smartphone might soon be used to uncover health problems.

Yet nearly 130 years since its inception after decades of science has mapped out our neuronal pathways a simple knob of rubber with a metal handle remains one of medicine's most essential tools. I'm referring to the cheap, portable, easy-to-use reflex hammer.

This unassuming device can be invaluable in diagnosing nervous and muscular disorders, and in determining whether a patient's pathology lies in the brain or elsewhere in the body. It can also help curtail healthcare spending by preventing unnecessary, often expensive testing. Yet like so many major medical and scientific discoveries, the reflex hammer has humble origins, in this case: the basement of a Viennese hotel.

The inn was run by the father of Leopold Auenbrugger, an 18th century doctor who is considered to be among the founders of modern medicine. To gauge how much wine was left for customers, hotel employees would thump casks with their hands and listen for a dull thud or hollow tympany. Auenbrugger realized that the same technique now called "percussing" could be applied to the human torso to, say, determine how much fluid had built up around a diseased heart. He wrote as much in his 1761 paper New invention to detect diseases hidden deep within the chest.

Relflex hammer warfare

Thought to be more accurate than the human hand, it wasn't long before percussion hammers were being designed to more precisely diagnose disease. Competition ensued.

Scottish physician Sir David Barry's model, released in the 1820s, was the first. German doctor Max A. Wintrich's came shortly after and was more popular, but was not without its critics: "[Wintrich's hammer] is inconvenient to hold, it is rigid ... it required education to use it, and even then it does not fulfill its purposes," a rival inventor commented.

As neurologist Dr. Douglas J. Lanksa wrote in a 1989 paper on the many types of reflex hammers, "Some were T-shaped or L-shaped, others resembled battle axes, tomahawks, or even magic wands." He adds that no material was off limits: wood, ebony, whale bone, brass, lead, even "velvet-covered worsted" (a type of yarn).

As percussion hammer warfare waged on, doctors and scientists were also beginning to understand the concept of reflexes, or involuntary, near-immediate responses to stimuli that occur before any sensory information reaches the brain. Muscular jerks. Blinking. Sneezing. Gagging. All of these are automatic feedback loops between sensory and motor neurons that help us navigate our environment and protect us from danger.

In 1875, German neurologists Drs. Heinrich Erb and Carl Friedrich Otto Westphal were among the first to realize that eliciting a reflex by briskly tapping the tendons of major muscles might be useful. They felt the knee jerk or "patellar-tendon" reflex in particular could help assess nerve function.

Hammers specifically suited to test reflexes were soon developed, the first of which had the now classic shape we're accustomed to a thin metal handle with a triangular rubber head. Designed by American physician John Madison Taylor in Philadelphia in 1888 and modified ever since by many the simple device was heavy enough to elicit reflexes, and had round edges to ease impact. An entry level model runs just $2.25 on Amazon.

The Krauss hammer, developed by German-American physician William Christopher Krauss, was designed around the same time. It had two rounded heads: a large one for knees and a smaller one for biceps. Dr. Ernst L.O. Trmner's did too, but it also tapered to a thin end to assess skin reflexes. There were also the Queen Square hammer, the Babinski hammer, the Buck hammer and the Berliner hammer. The Stookey hammer flaunted a camel hair brush to get a better sense of touch sensation. The list goes on.

Past to present

Daniella C. Sisniega is a third year medical student at the Boston University School of Medicine. Last month at the American Academy of Neurology's annual meeting, she presented a poster explicating the reflex hammer's past.

"I'm fascinated by how the reflex hammer started out as a percussion hammer, but was [then] adapted to elicit reflexes and has been in every neurologist's tool box ever since," she told NPR. "I also did not know that the little rubber triangle was the first reflex hammer. I feel like I owe it an apology!"

Sisniega jokes about the lackluster quality of the inexpensive Taylors.

"The little tomahawk is included in the kit everyone receives when they enter medical school," she recalls. "The rubber is cheap and very light, while the other hammers are heavier on the head so that you can use the 'swing' of the hammer as opposed to the strength of the strike to test the reflex."

While attending the AAN conference myself, I asked multiple sclerosis expert Dr. Stephen Krieger about the role of the reflex hammer in modern medical diagnosis.

"We could argue about the nuances of the hammer the Queens Square, the Tomahawk, plastic handle, metal handle, weighted, flexible or rigid but the hammer itself is always in the hand. Reflexes tell the story of neurologic diseases of all sorts," he says.

Krieger explains how disorders of the brain, like a stroke or brain tumor, result in hyperactive reflexes, while conditions affecting muscles and peripheral nerves usually result in reduced or non-existent reflexes. Reduced reflexes are, for example, a common symptom of back pain due to degenerative disk disease.

Dr. Andrew Wilner, an assistant professor of neurology at the Mayo Clinic, recounted the story of one of his patients, who had back pain, weakness and numbness of the legs. Wilner was leaning toward a diagnosis of either Guillain-Barre Syndrome (GBS) an autoimmune disorder of peripheral nerves or a myelopathy, an injury of some kind to the spinal cord. Both conditions can lead to medical emergencies, but each requires drastically different treatment.

"The reflex hammer was arguably our most important tool in narrowing down the differential diagnosis," he says. "Had we found diminished or absent deep tendon reflexes, GBS would have been more likely. As it turned out, the patient had brisk pathological knee jerks, pointing to a lesion in the brain or spinal cord."

Based on these findings, Wilner ordered an imaging study of the patient's spinal cord, where a lesion was found as opposed to pursuing the costly tests involved in a GBS diagnosis.

Wilner feels that the simple art of interviewing and examining a patient can get overshadowed by the myriad new diagnostic technologies. When it comes to clinical tools, he feels, sometimes basic is better.

"Technology is glorious," admits Krieger, "and [it] will teach us things about patients that we could never have known or imagined. But the simple, elegant, inexpensive almost plebeian swing of the reflex hammer has a cost/benefit ratio that I think no advanced technology will likely ever match."

Bret Stetka is a writer based in New York and an editorial director at Medscape. His work has appeared in Wired and Scientific American, and on The Atlantic.com. He graduated from the University of Virginia School of Medicine in 2005. He's also on Twitter: @BretStetka

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Rare Gene Mutations Inspire New Heart Drugs – New York Times

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New York Times
Rare Gene Mutations Inspire New Heart Drugs
New York Times
Added to the existing arsenal of cholesterol-reducers and blood pressure medications, the new medications will drive the final nail in the coffin of heart disease, predicted Dr. John Kastelein, a professor of vascular medicine at the University of ...

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One genetic test transforms a life – Arkansas Online

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En route to Dallas and just an hour out of Arkansas, Lesley Murphy got a call.

She had been tested about a week before for a genetic mutation that would make her more susceptible to breast and ovarian cancer. And, as it turned out, she had the mutation.

She didn't have either cancer, but, at 29, she found herself weighing her options: go in every six months for screenings, take medicine or undergo a preventive double mastectomy. She had some three hours to go to get to Dallas, where, coincidentally, she had an appointment with her gynecologist.

"I spent a lot of that -- probably at least an hour and a half -- telling nobody," Murphy said. "I was like listening to music and just thinking."

Studies have found that more women are choosing preventive mastectomies. Actress Angelina Jolie drew attention to the procedure in 2013 when she had a mastectomy after learning of her susceptibility to breast and ovarian cancer. The studies vary in the rates of women undergoing the surgical procedure, but most show percentages now in the low teens compared with the 2 percent to 4 percent range in the late 1990s and early 2000s.

Mastectomies can reduce breast cancer recurrence to 1 percent, said Dr. Daniela Ochoa, a breast surgical oncologist at the University of Arkansas for Medical Sciences, Little Rock.

"We take out all the breast tissue that we can see and identify grossly and anatomically with our eyeballs, but we can't say that at a teeny tiny cell level, we got every cell," she said. "So that's why we can't completely eliminate the possibility that there may be something down the road, but it's certainly the most aggressive thing that you could do to decrease your risk."

Murphy's test results came nearly three years after her mother, Martha Murphy, was diagnosed with breast cancer. An unlikely candidate, Martha Murphy had no cancers in her family history, was healthy, exercised regularly, ate well. Unable to come to terms with the diagnosis, she eventually got a genetic test -- the first in her family -- showing she, too, had the genetic mutation, called BRCA-2, predisposing her to breast and ovarian cancers.

In short order, Martha Murphy opted for a double mastectomy, a reconstruction and later an oophorectomy, the removal of the ovaries.

Her two other daughters took a genetic test later that year: one had the mutation, the other didn't. Lesley Murphy would be the tiebreaker.

Bachelor, Argentina

A Fort Smith native, Lesley Murphy graduated from the University of Georgia and worked in Atlanta and Washington, D.C. In the nation's capital, she took a hiatus from her job at a Democratic consulting firm to compete with 25 other women on ABC's show The Bachelor. She didn't find love on the show.

But after the television stint, Lesley Murphy moved to Argentina with her boyfriend at the time and worked as a marketing manager for a luxury hospitality company. She had been thinking of ways to take advantage of her following -- she has 66,284 followers on Twitter, 224,000 on Instagram and 7,652 on Facebook -- from the show, and nothing had come together, she said.

She spent her time there traveling throughout South America, documenting her travels along the way. She decided to trade in her job to be a professional travel blogger, living out of a suitcase -- albeit, a large one.

On March 10, 2014, Lesley Murphy was in her Argentina apartment when her mom and dad called, breaking the news of Martha Murphy's diagnosis.

The parents reassured their three daughters that Martha Murphy found the tumor early and all would be OK. She had consulted two doctors, both of whom had recommended surgery to remove the tumor and 30 rounds of radiation. One of the doctors, an oncologist and family friend, also had recommended a genetic test.

For Martha Murphy, finding the genetic mutation was like finding a needle in a haystack, said Dr. Kent McKelvey, the director of Adult and Cancer Genetics Services at UAMS.

"It would be like, you know, you're sitting in the cancer institute, and there's a lot of rooms in the cancer institute," he said. "You know in one of the rooms, there's the needle that you're looking for. In her mom, we looked through every room, and we found where the needle was."

Martha Murphy tested positive for the BRCA-2 gene mutation.

Days later, with two months until her oldest daughter's wedding, she had a double mastectomy at UAMS. By the May 31, 2014, wedding, she was on the dance floor.

hereditary risk

If an average woman has an 11 percent risk of breast cancer, those with BRCA-1 may have up to eight times the risk, and those with BRCA-2 have about four or five times the risk, McKelvey said.

Cancer occurs because of changes in DNA, which happen because of bad luck, environmental exposures or heredity, said McKelvey, also an associate professor in UAMS' College of Medicine. Most patients get it because of a combination of bad luck and environmental exposures, including hormone-replacement therapies for post-menopausal symptoms and lifestyle choices, such as not eating well, said Ochoa, the breast surgeon.

In Lesley Murphy's case, the major risk factor was hereditary, McKelvey said.

Genetic tests -- like those the Murphys took -- have increased over the years: just over 1,000 tests were ordered in 2012, and now the number is closer to 50,000 a year, according to the Genetic Testing Registry. Some companies are now offering genetic tests for a slew of predispositions, though McKelvey had a warning.

"You don't just order a genetic test because there are implications for you, for your future health care and for your family," he said. "People need to know what they're getting. I'd say it's important to have pre-test counseling and post-test counseling."

UAMS is the only health care facility that offers cancer genetics in the state -- hundreds of genes are predisposed to about 50 cancer syndromes, he said -- and McKelvey's office includes genetic counseling. One of his genetic counselors called Lesley Murphy on her drive to Dallas in mid-February this year, confirming the gene mutation and setting another appointment with McKelvey nearly two months later.

Hers had been an easier find because they knew what to test for and where to find it, McKelvey said.

Thinking over her options, Lesley Murphy ruled out the regular screenings -- getting a breast MRI every six months and a mammogram every six months -- almost immediately.

She figured she could have the procedure done at any time. But once she got to her gynecologist's appointment in Dallas, the doctor said, "You do not have to do this, but in my mind, what's the point of hanging on to something that's potentially very cancerous?"

Lesley Murphy thought it over for a few more days: she would be gone all of March for work, and the gynecologist was right. She called McKelvey's office to schedule an earlier appointment. Afterward, she marked April 11 as the date for her first-ever surgery.

She spent March traveling to Colorado, the United Kingdom, Finland and Canada. She worked out and did yoga.

On March 8 -- International Women's Day -- on "a horrid eight-hour layover in Germany," she shared with the world her genetic test results.

"I wanted to be a voice for other people who were going through the same thing," she said," even just thinking about it or even just starting the conversation for families or a friend to get tested."

She prepared herself mentally, and before she knew it, it was April 11.

"I remember going to sleep that night and getting pretty sentimental because it was my last night with the old me," she said, "and the next day was going to be completely different."

3-month process

The procedure takes out the breast tissue down to the pectoral muscle, said Ochoa, the breast surgeon and assistant professor in UAMS' College of Medicine. Expanders and implants go underneath the muscle, and some -- if not all -- of the skin is saved for the reconstruction, a three-month process, she said.

"So when you wake up after the first surgery, it's not your final outcome and your final volume. It's not completely flat in what we otherwise would have without a reconstruction," Ochoa said. "They gradually fill up the expander, get up to the size that you're ultimately shooting for, and then there's a second surgery where they come in, switch out the expander to the permanent implant. The permanent implant is when you pick whether you want saline or silicone, kind of what size you're shooting for."

At UAMS, surgeons perform preventive mastectomies, but more often than not, patients find out they have the BRCA gene once they have already been diagnosed with breast cancer, Ochoa said. She added that most cancer patients end up with the disease because of either bad luck or environmental factors, not for hereditary reasons.

Lesley Murphy woke up around 3 p.m. April 11, after some seven hours in surgery. She vividly remembered -- "how could I forget the feeling" -- first feeling pain when she was moved from one bed to another.

"Realization set in on what road was ahead," she said. "I remember my dad was driving me home from the hospital the day after surgery, and I was so nervous because even in the wheelchair from my hospital room to [the first floor], every little crack you would go over, you would feel it."

Her mom, who had been by her side through all the doctor appointments, slept by her side for the first couple of nights. She couldn't sit up in bed or easily get up to use the bathroom. She needed help getting dressed in the mornings. She didn't like being in the same position for too long.

But, day by day, she started to feel more normal.

By May 6, she was lying on her stomach, spending time in the sun and working out, though, she said, she may have cheated on the last one by a bit.

And on May 11 -- a month after her surgery -- she posted on social media a thank-you note to her supporters, who she said helped ease her recovery, and wrote that she hoped she has helped others in a similar situation.

"Knowledge really is power," she said in an earlier interview. "It's been a wash of emotions, but I think this is a story of empowerment."

Metro on 05/28/2017

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Memorial Day Movies: A Politically Incorrect Guide | National Review – National Review

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Memorial Day is of course when we remember those who died serving their country in our armed services. There was a time when Americas movie industry took pride in honoring American servicemen, both the living and the dead; there are a few actors and directors in Hollywood who still do. But since movies about Americans at war have largely gone in the opposite direction since Vietnam, this weekend it might be worthwhile going back to see seven movies that deal with war in an honest but not defeatist way. These works portray serving ones country in uniform as something to be revered and respected, not dismissed or derided.

The Big Parade, directed by King Vidor (1925). The one silent entry in the competition, and the only one for World War I (Americas entry into that conflict was 100 years ago this year), this sprawling wartime epic stars John Gilbert as the affluent, rather happy-go-lucky young man who goes to serve in France with the Rainbow Division. While there, he experiences the horrors of trench warfare, the value of comradeship, and (inevitably) romance with a French country girl. Gilberts career was ruined by the advent of talkies, because his voice sounded squeaky and hollow. But Big Parade reminds us of why he was one of the great actors of the silent screen.

They Were Expendable, directed by John Ford (1945). No list of Memorial Day movies is complete without one directed by John Ford, and one starring John Wayne in this case as a lieutenant reluctantly serving on Patrol Torpedo boats while fighting the Japanese invasion of the Philippines. But the movies real star is Robert Montgomery, who actually commanded PT boats during the war and who poignantly captures the movies theme of sacrifice in the face of inevitable defeat. The entire film is poetry in motion, like any John Ford film, but its worth remembering that John Ford, Captain, USNR (as the credits list him) and his film crew also risked their lives more than once doing work for the Navy in World War II.

Battleground, directed by William Wellman (1949). The story follows a squad of GIs in the darkest days of the Battle of the Bulge, when fear of death and defeat tests the courage and manhood of every character. The films technical adviser was LieutenantColonel Harry Kinnard, who had been deputy commander of the 101st Airborne during the Battle of the Bulge, so you can be reasonably confident its an accurate portrayal of the fighting. The standout performance is by James Whitmore, who won a Golden Globe award and who had seen action as a Marine in the South Pacific. Whitmore also does the voice-over narration for the next film on the list.

The Red Badge of Courage, directed by John Huston (1951). Memorial Day began as a holiday to honor the Civil War dead, so its fitting that not one but two films on our list deal with the War between the States. This one is based on the classic story by Stephen Crane of a young soldier who experiences fear and panic on the battlefield but rallies to face the enemy and serve his country as well as his comrades. It stars Audie Murphy, who was a real-life war hero in World War II, and Bill Mauldin, who saw action as an artist and cartoonist on the Italian Front. The Badgeis spare, sparse, and filmed in austere black and white, the studio chopped itfrom two hours to less than 70 minutes despite Hustons protests. It is still worth seeing. The person who finds those lost 50 minutes of Hustons favorite film will earn cinematic immortality.

Pork Chop Hill, directed by Lewis Milestone (1959). This is the Korean Wars entry in our list, commemorating the seemingly pointless firefight of U.S. soldiers desperately holding their position against repeated North Korean and Chinese assaults while waiting for their superiors to negotiate the end of the war. Based on S. L. A. Marshalls best-selling book, it stars Gregory Peck as the officer who is forced to watch his command dwindle from 135 to just 25 men, in a seemingly pointless sacrifice. Directed by the same Milestone who delivered one of the most realistic battle scenes ever in All Quiet on the Western Front (1930), and shot in a nightmare landscape of light and shadow, the film stands as a harrowing, gripping tribute to courage and heroism. Watch for appearances by Martin Landau in his first movie, and by Gavin MacLeod although we are a very long way from the Love Boat.

The Longest Day, directed by Ken Annakin, Andrew Martin, and Bernhard Wicki (1962). Do yourself a favor. Midway through watching this Darryl Zanuckproduced film about the D-Day invasion and starring in cameo roles virtually every American movie star who could fog a mirror from John Wayne, Robert Mitchum, and Henry Fonda to Red Buttons, Sal Mineo, and Rod Steiger break off and run the first 15 minutes of Saving Private Ryan. The rest of Spielbergs movie is largely worth skipping, but the Omaha Beach sequence gives a riveting meaning to the heroism and sacrifice of American soldiers on the Normandy beaches that Longest Day unaccountably misses. What the movie does have, however, is British actor Richard Todd, who actually served on D-Day in the attack on Pegasus Bridge that he is shownleading in the film.

Gods and Generals, directed by Ron Maxwell (2003). The first documented Memorial Day celebration was led in April 1866 by the ladies of Columbus, Miss., who decorated the graves of both Union and Confederate dead. So its worth winding up this Memorial Day tribute by watching a visually sumptuous film that honors both sides in the War between the States, with outstanding performances by Stephen Lang as Stonewall Jackson and Robert Duvall as Robert E. Lee. With the totalitarian Left busy vandalizing and pulling down statues to these heroes, this is a film certain to drive your liberal friends crazy also because all the characters speak movingly of their devotion to God and service to the Almighty as well as to their country.

They say there are no atheists in a foxhole. I cant guarantee there wont still be atheists, and leftists, after watching these films this weekend. But everyone else will have a new sense of dedication to what this country stands for and to the memory of those who gave that last full measure.

Arthur Herman is a senior fellow at the Hudson Institute, and author of Douglas MacArthur: American Warrior.

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Trump administration sued over climate change ‘censorship … – Climate Home

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NGO suit claims US agencies are illegally withholding information about the suppression of climate science in public communications

The Centre for Biological Diversity (CBD) filed a lawsuit on Tuesday against four US federal agencies over what it called censorship of climate change information.

Filed at a district court in Washington DC, the legal challenge targetsthe Environmental Protection Agency and Departments of Interior, State and Energy.

It concerns the removal of informationon climate science and policy from government websites and public communicationssince the advent of Donald Trumps presidency.

The environmental group submitted requests under freedom of information law on 30 March to disclose directives to federal employees on this subject. These requests were not answered within the statutory deadlines, according to the complaint.

The Trump administrations refusal to release public information about its climate censorship continues a dangerous and illegal pattern of anti-science denial, said Taylor McKinnon fromthe CBD. Just as censorship wont change climate science, foot-dragging and cover-ups wont be tolerated under the public records law.

Since Trump took office in January, online datafactsheets as well as policy informationhave been taken down, pending review. Scientists have expressed fearsentire datasets could be airbrushed from public record.

Trump is seeking to revive US coal mining and expand oil production, in defiance of the scientific consensus that burning fossil fuels destabilises weather patterns and drives sea level rise.

Weekly briefing:Sign up for your essential climate news update

The centres lawsuit is part of a wave of litigation seeking to promote and defend action to address dangerous climate change.

A surveyfrom Columbia Universitys Sabin Centre for Climate Change Law identified 654 such cases in the US more than three times the number across the rest of the world.

These range fromobjections to specific projects like airports or coal plants to a high profile pleafrom 21 young people for stronger climate policy to protect their future.

International examples include a Pakistani farmers campaign to enforcegovernment policy protecting citizens from the impacts of climate change and a Norwegian NGO lawsuit against oil exploration in the Arctic.

Judicial decisions around the world show that many courts have the authority, and the willingness, to hold governments to account for climate change, said Michael Burger, executive director of the Sabin Centre.

In the United States, climate change litigation has been absolutely essential, from the first lawsuit demanding the US Environmental Protection Agency regulate greenhouse gas emissions, to a recent lawsuit claiming a constitutional right to a stable climate system. Similar litigation all over the world will continue to push governments and corporations to address the most pressing environmental challenge of our times.

Researchers foresee a growth in cases in developing countries, as theybring in more climate laws, and an increased focus on climate refugees.

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