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Category Archives: Transhuman News
Technobabble: Dancing hot dog is AR’s first king and yes, DNA is hackable – CIO Dive
Posted: August 11, 2017 at 5:48 pm
Technobabble is our look at the more colorful aspects of technology and the tech industry.Be sure to check out our most recent edition, which has microchips on the brain.
In the last few weeks humans became a part of the technological infrastructure with employee microchipping. Potential privacy concerns aside,employees of Three Square Market volunteered for the seemingly sci-fi microchipping.
While many of us would prefer to keep technical hardware outside our immediate biology, two DNA researchers decided to reverse that idea. In fact, they used DNA to infiltrate technology and their experiment proved successful.
This week, researchers from the University of Washington tested a self-inflicted malware attack within their DNA research lab, according to Wired. The team introduced malicious code into a sample of DNA that when tested by a gene sequencer, the resulting data became malware on the computer that received it.
In conducting their experiment, the researchers intentionally created a high-risk environment, susceptible to a "bioterrorist" attack. This included muting security programs and creating vulnerabilities in their software.
The attack is supposedly the first "DNA-based exploit of a computer system," according to MIT Technology Review.
While genetic specialists have shrugged off the effort, claiming the attack was destined to succeed because of the controlled environment, it is now evident that such an attack is possible. Hackers could become biohackers or something even more sinister.
Vulnerabilities in security and software systems are common on the cybersecurity landscape. In fact, most cyberattacks depend on them, as was the case with May's WannaCry attack. The only difference between the deliverance of a traditional cyberattack and a DNA attack,is their point of entry.
The University of Washington researchers are now arguing that biohackers could send faulty, manipulated or simply fake DNA samples with malicious encryptions to industries that study and store such data. These include college campuses, police forensics and genetic processing labs. The idea is that hackers, motivated by the plethora of personal data stored in these industries, could send maliciously coded DNA to be tested and thus infect computers and networks.
Previously, DNA scientists only had to worry about genetic miscalculations or those that could harm the human biology, not the safety of their computer software.
Traditional cyberattacks are estimated to cost the U.S. $121 billion per year. Companies are highly scrutinized and legally penalized when personal information is either leaked or exposed to malicious actors. Now that DNA could become the next phishing scam, it seems like threats within cybersecurity have expanded once again. When hacking evolves, so must cybersecurity.
Since a corrupt sample of saliva could potentially be the next ransomware or wiper, what developments will take place to test a genetic sampling before they reach a networked gene sequencer?
For the first time since its inception 16 years ago, an American has won Certiport's annual Microsoft Office Specialist World Championship in the Excel division, according to an announcement. John Dumoulin, a 17-year-old from Virginia, took home a $7,000 cash prize and serious bragging rights for his college applications.
Most of the other 560,000 worldwide student entries and 157 finalists ranging from ages 13 to 22 were not so fortunate in their efforts to prove their mastery of Microsofts Excel, Word and PowerPoint products.
Students were required to take a Microsoft Office Specialist certification exam, and finalists were selected at regional competitions. The project-based tests not only highlight the technical skills of youth worldwide, but also engage students with computer-based technology and develop competitive skills tailored to real-world applications.
With past and present victors hailing from every continent except Antarctica, the championship offers a small glimpse into the global presence of and dependence upon office technology.
It stands among the ranks of other prestigious international technology competitions such as the IEEE Student Branch Website Contest, the ACMInternational Collegiate Programming Contest and Microsoft's Imagine Cup.
Augmented and virtual reality is taking off, with leading companies investing heavily in enterprise and consumer technology. Now, AR is even finding a home in earnings calls.
That's right, Evan Spiegal, CEO of Snap Inc., declared SnapChat's dancing hot dog the "worlds first augmented reality superstar," BuzzFeed reports.
The hot dog was a hit, viewed 1.5 billion times on SnapChat since its debut. Snap's earnings, however, were not quite so hot. In its latest earnings report, Snap Inc. missed analysts' earnings expectations and its stock is down 16%.
The internet caught fire earlier this week when it was revealed the creator of current password policies has regrets. In 2003, Bill Burr wrote an 8-page document on password policies for the National Institute of Standards and Technology advising users to change passwords regularly, employing a mix of characters, numbers and capital letters, The Wall Street Journal reports.
Those password policies became law, triggering hair-pulling and vehement exclamations every 90 days when programs insisted users change passwords.
But Burr, now retired, said those 2003 policies don't actually stop hackers. After all, is there really much difference between PaSsWord1! and PaSsWord!1? Changes are too subtle, making passwords easy to guess. And, it just causes problems for users too.
This year, NIST has revamped its password policies and done away with some of the long-standing best practices for passwords. The new framework gets rid of arbitrary characters and frequent password resets, instead favoring long password phrases and password resets only if there is evidence of a compromised password.
Soon the most-common passwords could change from "123456" to "thequickbrownfoxjumpsoverthelazydog."
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Technobabble: Dancing hot dog is AR's first king and yes, DNA is hackable - CIO Dive
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Scientists successfully infiltrate computer using malware coded into DNA – The Verge
Posted: at 5:48 pm
In what reads like science fiction becoming reality, researchers at the University of Washington have been able to successfully infect a computer with malware coded into a strand of DNA. In order to see if a computer could be compromised in that way, the team included a known security vulnerability in a DNA-processing program before creating a synthetic DNA strand with the malicious code embedded. A computer then analyzed the infected strand, and as a result of the malware in the DNA, the researchers were able to remotely exploit the computer. The results were published in a recent paper.
We wanted to understand what new computer security risks are possible in the interaction between biomolecular information and the computer systems that analyze it, the researchers wrote, led by Tadayoshi Kohno, a professor of computer science at the University of Washington.
The basic structural units of DNA are called nucleotides, and theyre stored as letters A, C, G, and T. Sequencing allows scientists to determine the order of the nucleotides, which in turn means scientists are able analyze the genetic information carried in the strands. The cost of sequencing has sharply fallen by over 100,000 times in the last 10 years.
After sequencing, this DNA data is processed and analyzed using many computer programs. Modern technology means hundreds of millions of DNA strands can be processed at the same time. Though taking over computers using DNA seems like something out of the movies, creepily played out in real life, the researchers say theres no reason for concern. We have no evidence to believe that the security of DNA sequencing or DNA data in general is currently under attack. Instead, we view these results as a first step toward thinking about computer security in the DNA sequencing ecosystem, the scientists said.
A primary goal of this study was to better understand the feasibility of DNA-based code injection attacks. We also know of no efforts by adversaries to compromise computational biology programs, they explain.
Just last month, scientists revealed they were able to insert a GIF of a horse into the DNA of living bacteria.
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Scientists successfully infiltrate computer using malware coded into DNA - The Verge
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Cotswolds village residents shocked after DNA tests show they are less than 50% British – The Independent
Posted: at 5:48 pm
Hot air balloons in the air after taking off in a mass ascent at the Bristol International Balloon Fiesta.
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A car on fire in the North Queen Street area of Belfast, close to the site of a contentious bonfire. The car was torched shortly after 10pm on Monday night
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A post-Brexit trade deal with the US could see a massive increase in the amount of cancer-causing toxins in British milk and baby food
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Katarina Johnson-Thompson of Great Britain (Lane 6) and Carolin Schafer of Germany (Lane 7) and their opponants compete in the Women's Heptathlon 100 metres hurdles during day two of the 16th IAAF World Athletics Championships London 2017 at The London Stadium.
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Taoiseach Leo Varadkar is greeted by PSNI and Garda police officers representative of the gay community as he attends a Belfast Gay Pride breakfast meeting in Belfast, Northern Ireland. The Irish Prime Minister is on a two day visit to the province having already met with DUP leader Arlene Foster yesterday. The DUP, Northern Ireland's largest political party have so far blocked attempts to legalise gay marriage.
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Athletics - IAAF World Athletics Championships Preview - London, Britain - August 3, 2017 Great Britain's Mo Farah takes a photo in the stadium
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Britain's Bank of England Governor, Mark Carney, addresses journalists during a press conference to deliver the quarterly inflation report in London, August 3, 2017. REUTERS
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Bank of England and British Airways workers stage a protest outside the Bank of England in the City of London.
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Britain's Prince Philip, in his role as Captain General, Royal Marines, attends a Parade to mark the finale of the 1664 Global Challenge, on the Buckingham Palace Forecourt, in central London, Britain.The 96-year-old husband of Britain's Queen Elizabeth, made his final solo appearance at the official engagement on Wednesday, before retiring from active public life.
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Riders wait at the start on Horse Guards Parade in central London ahead of the "Prudential RideLondon-Surrey Classic 2017", UCI World Tour cycle race in London.
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A nurse shows a message on his phone to colleagues as they take part in a protest near Downing Street in London. The Royal College of Nursing have launched a series of demonstrations, as part of their 'Summer of Protest' campaign against the 1 percent cap on annual pay rises for most NHS staff
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Two men look through binoculars at US Navy Nimitz-class aircraft carrier USS George H.W. Bush anchored off the coast on in Portsmouth, England. The 100,000 ton ship dropped anchor in the Solent this morning ahead of Exercise Saxon Warrior 2017, a training exercise between the UK and USA
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Connie Yates, mother of terminally-ill 11-month-old Charlie Gard, arrives at the Royal Courts of Justice in London on where a High Court judge is set to decide where baby Charlie Gard will end his life
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UK Foreign Secretary Boris Johnson gestures while posing for a photograph at the Sydney Opera House, in Sydney. Johnson is there to attend AUKMIN, the annual meeting of UK and Australian Foreign and Defence Ministers.
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Britain Prime Minister Theresa May walks with her husband Philip in Desenzano del Garda, by the Garda lake, as they holiday in northern Italy
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England team players pose after winning the ICC Women's World Cup cricket final between England and India at Lord's cricket ground in London
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Chris Froome, wearing the overall leader's yellow jersey, celebrates on the podium after the twentieth stage of the Tour de France cycling race, an individual time trial over 22.5 kilometers (14 miles) with start and finish in Marseille, France.
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Competitors take part in the swim stage during the AJ Bell London Triathlon 2017 at Royal Victoria Docks in London, England. The 21st annual AJ Bell Triathlon sees 13000 competitors take part in the world's largest triathlon.
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Environment Secretary Michael Gove looks at screens in the information pod in the forest zone at the WWF Living Planet Centre in Woking, after he told an audience of environmental and countryside organisations that Brexit gives scope for Britain to be a global leader in green policy
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Screen grabbed image taken from video issued by NATS showing air traffic over the UK yesterday at 12:15pm, with red representing departures, yellow arrivals, purple domestic and blue overflights. Air traffic controllers are dealing with the busiest day in the UK's aviation history. A total of 8,800 planes are to be handled by controllers across the country over 24 hours, at the start of a summer season which is due to see a record 770,000 flights in UK airspace - 40,000 more than last year
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Defence Secretary Sir Michael Fallon shows off his cufflinks after cutting steel on the first Type 26 frigate at BAE System's Govan Shipyard near Glasgow.
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Cotswolds village residents shocked after DNA tests show they are less than 50% British - The Independent
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CU Boulder researcher uses turkey DNA to shed light on ancestral Pueblo people – Boulder Daily Camera
Posted: at 5:48 pm
DNA extracted from turkey bones buried in the Mesa Verde region before migration from that area and DNA collected from the northern Rio Grande region before and after Mesa Verde was abandoned is cited in a new study which suggests a strong connection between contemporary Tewa Pueblo people in New Mexico and the Pueblo people who lived in Mesa Verde before its collapse. (Camera file photo )
DNA from domesticated turkeys has been used to track the mass exodus of ancestral Pueblo people from Mesa Verde in the late 13th century to the northern Rio Grande north of Santa Fe, N.M., according to a University of Colorado news release.
CU assistant professor Scott Ortman, one of four lead authors on a study documenting the research in a recent issue of the science journal PLOS ONE, said good evidence has been found supporting a substantial influx of turkeys into the northern Rio Grande region that had the same genetic composition as turkeys from the Mesa Verde region.
"This is a new line of evidence suggesting a strong connection between contemporary Tewa Pueblo people in New Mexico and the Pueblo people who lived in Mesa Verde country before its collapse," Ortman said.
The study included co-authors from Washington State University, the University of California, Davis and the University of Oklahoma.
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CU Boulder researcher uses turkey DNA to shed light on ancestral Pueblo people - Boulder Daily Camera
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DNA Editing Technique Corrects Defects in RNA-Associated Diseases – R & D Magazine
Posted: at 5:48 pm
An updated version of the CRISPR-Cas9 gene editing technique has set its sights on RNA-associated diseases.
Researchers from the University of California San Diego School of Medicine have developed a new technique known as RNA-targeting Cas9 (RCas9) to correct molecular mistakes that can lead to microsatellite repeat expansion diseases including myotonic dystrophy types 1 and 2the most common form of hereditary ALS and Huntingtons disease.
This is exciting because we're not only targeting the root cause of diseases for which there are no current therapies to delay progression but we've re-engineered the CRISPR-Cas9 system in a way that's feasible to deliver it to specific tissues via a viral vector, senior author Gene Yeo, Ph.D., professor of cellular and molecular medicine at UC San Diego School of Medicine, said in a statement.
Microsatellite repeat expansion diseases are causes by errant repeats in RNA sequences that are toxic to the cell because they prevent production of crucial proteins.
Repetitive RNAs will accumulate in the nucleus or cytoplasm of cells to form dense knots called foci.
During the study, the researchers used the new technique to eliminate problem-causing RNAs associated with microsatellite repeat expansion diseases in patient-derived cells and cellular models of the diseases.
Under normal circumstances researchers will design a guide RNA to match the sequence of a specific target gene. The RNA will direct the Cas9 enzyme to the desired spot in the genome to cut the DNA.
The cell repairs the DNA break imprecisely, inactivating the gene. The researchers also can replace the section adjacent to the cut with a corrected version of the gene. RCas9 will work similarly, but the guide RNA directs Cas9 to an RNA molecule instead of DNA.
In the laboratory, the researchers tested the new technique on microsatellite repeat expansion disease RNAs and found that 95 percent or more of the RNA foci linked to myotonic dystrophy type 1 and type 2 one type of ALS and Huntingtons disease were eliminated.
RCas9 also reversed 93 percent of MBNL1a protein that normally binds RNA but is sequestered away from hundreds of its natural RNA targets by the RNA foci in myotonic dystrophy type 1in patient muscles cells and the cells ultimately resembled healthy control cells.
However, challenges must be overcome before RCas9 could be used on patients, as efficient delivery of RCas9 to patient cells is not yet perfected. Non-infectious adeno-associated viruses are commonly used in gene therapy but are too small to hold Cas9 to target DNA.
The researchers developed a smaller version of Cas9 by deleting regions of the protein that were necessary for DNA cleavage but dispensable for binding RNA.
The main thing we don't know yet is whether or not the viral vectors that deliver RCas9 to cells would elicit an immune response, Yeo said. Before this could be tested in humans, we would need to test it in animal models, determine potential toxicities and evaluate long-term exposure.
The study was published in Cell.
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DNA Editing Technique Corrects Defects in RNA-Associated Diseases - R & D Magazine
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Americans want a say in human genome editing, survey shows – Los Angeles Times
Posted: at 5:47 pm
When it comes to CRISPR, our society has some important decisions to make.
Just last week, scientists reported a new first in the journal Nature: They edited heritable cells in human embryos to treat an inherited form of heart disease. The day after the research was published, a group of genetics experts published a statement calling for further debate before applications of the technology are taken any further in humans.
According to a new survey of 1,600 adults published in the journal Science today, much of the American public shares this desire for engagement in decision-making. Led by Dietram Scheufele, a professor of science communication at the University of Wisconsin - Madison, the study found that while support for gene editing applications varies, a majority of respondents think the public should be consulted before genome editing is used in humans.
Gene editing presents the potential for remarkable benefits.
The potential to cure genetic disease and to ensure the safety of the world's food supply in the face of climate change are perhaps the most exciting opportunities, said Jennifer Doudna, a chemist at UC Berkeley who was an early pioneer of the powerful gene-editing technique CRISPR-Cas9 and was not involved in the new study.
But it also raises some serious ethical questions, especially when we turn our attention to tweaking the human genome, Scheufele said. Many people find some applications like disease treatment valuable, and others like making your children more intelligent morally shaky.
For example, scientists may eventually develop a cure for what some people dont consider an illness like a disability, Scheufele said. Would those who chose not to undergo genetic therapy or who couldnt afford it then be discriminated against even more as a result?
These and other ethical concerns go beyond the bounds of science, Scheufele says, and his poll results show that the public wants to be involved in the debate.
Oregon Health & Science University
Embryos develop into blastocysts after co-injection, which could someday be used in fertility clinics to help people trying to have children free of genetic disease.
Embryos develop into blastocysts after co-injection, which could someday be used in fertility clinics to help people trying to have children free of genetic disease. (Oregon Health & Science University)
Because of the fast-moving progress of gene editing research and the vast potential for both beneficial applications and negative consequences, many experts have called for public engagement on the issue including in a consensus report released this year by the National Academy of Sciences (NAS) and the National Academy of Medicine (NAM).
The new study strove to answer some questions emerging from the National Academies report. First, how do people feel about different applications of gene editing? And secondly, do Americans agree that the public should be consulted on gene editing applications? Similar questions had been asked in previous polls, but the authors wanted to get some more specific data.
Human genome editing can be used for two broad purposes: therapy or enhancement. Therapeutic applications include the treatment of genetic disorders like muscular dystrophy or sickle cell disease, while enhancement might be used to change your daughters eye color or make her grow taller.
Each of these changes can be heritable or not, depending on which type of cell is tweaked. Somatic cells are nonreproductive, so any changes to these cells will not be passed on to future generations. Germline cells, on the other hand, are heritable therefore, any modifications will be inherited by the treated persons children and grandchildren.
Reprinted with permission from D.A. Scheufele et al., Science 357:6351 2017
A graphic from the paper showing the acceptance of gene editing by application.
A graphic from the paper showing the acceptance of gene editing by application. (Reprinted with permission from D.A. Scheufele et al., Science 357:6351 2017)
The new poll shows that two-thirds of Americans support therapeutic applications, whether to somatic (64% support) or germline (65% support) cells. When it comes to enhancement, however, there is much less approval. Only 39% of respondents find somatic enhancement acceptable, with 35% saying it is unacceptable. Levels of support dropped even lower for heritable germline enhancement, to 26% in acceptance and 51% in opposition.
When these results were broken down by how religious respondents were, some variation emerged. Religious people are less supportive of genome editing overall. Only half of them expressed some support of treatment applications, compared with 75% of nonreligious respondents. When it comes to enhancement, 28% of religious respondents and 45% of nonreligious people reported some level of support.
The authors also ranked respondents in terms of low, medium and high knowledge by their score on a nine-question factual quiz. Those in the high-knowledge category were far more supportive of treatment applications, with 76% in support compared with only 32% of low-knowledge respondents.
When asked about enhancement applications, the high-knowledge group was very polarized, with 41% in support and a nearly equal amount in opposition. In contrast, half of low-knowledge people reported that they neither support nor oppose gene editing.
Robert Blendon, who studies health policy at the Harvard School of Public Health, said that the polarization could be there for a reason. Those who know more about the technology have probably learned about it because they have a vested interest maybe a genetic disease runs in their family or they are concerned with ethical consequences.
Reprinted with permission from D.A. Scheufele et al., Science 357:6351 2017
A graphic from the paper showing the opinions of respondents based on religiosity and knowledge.
A graphic from the paper showing the opinions of respondents based on religiosity and knowledge. (Reprinted with permission from D.A. Scheufele et al., Science 357:6351 2017)
The more religious people were, the less likely they were to trust the scientific community to responsibly develop new technologies. This trend was opposite when it came to knowledge: The more knowledgeable people were about the technology, the more likely they were to trust the scientists.
While the two groups may have very different reasons, both highly religious and highly knowledgeable people agreed that the public should be involved in decision-making before gene editing is used in humans.
Blendon said that while its clear the public wants a say in how gene editing is used, its unclear exactly what public engagement looks like. The first way most people might think of being consulted is through their elected officials, but other surveys suggest that the public actually doesnt think the government should be making decisions about genome technology.
Scheufele said that there is currently no infrastructure in place for crucial two-way communication between scientists and the public on the genome editing issue but its important to develop it.
Diverse groups and perspectives have an important role to play in shaping the early stages of human genome editing research, Scheufele said. Scientists may not think to investigate all the questions that the public may deem vital.
If we ask the wrong questions, he said, then we may have perfect technical answers to all the wrong questions.
@mirakatherine
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Americans want a say in human genome editing, survey shows - Los Angeles Times
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Americans are becoming more open to human genome editing … – Science Magazine
Posted: at 5:47 pm
Americans have conflicting views on how technologies that allow human genome editing, such as one that uses the Cas9 enzyme to snip DNA, should be employed.
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By Jon CohenAug. 10, 2017 , 2:40 PM
CRISPR, the powerful genome-editing tool, does a molecular tango to cut and modify DNA that is highly nuanced. The same subtlety applies to the publics views on how best to use genome editing in humans, a new survey of adults in the United States shows.
Earlier surveys of Americans (here and here) have found a reluctance to support human genome editing, with many respondents expressing ethical and other concerns about such intentional tinkering. But the new survey, conducted by social scientists from the University of Wisconsin (UW) in Madisonand Temple University in Philadelphia, Pennsylvania, found that two-thirds of the 1600 respondents thought genome editing was generally acceptable. This held true whether the genome modification was in germline cells, which can be passed on to offspring, or in somatic cells that cannot. But that acceptance was qualified, and colored by religious beliefs and scientific knowledge. There was one thing that almost everyone agreed on, however: They want to be part of the policy discussion about what should and should not be allowed.
The survey, described today in a Policy Forum published by Science, randomly presented people with different vignettes that described genome editing being used in germline or somatic cells to either treat disease or enhance a human with, say, a gene linked to higher IQ or eye color. Although respondents were generally open to the use of editing technologies, acceptance depended strongly on the specific purpose and its impact on future generations. For instance, there was scant support for using genome editing to enhance a germline; just 26% of people found that acceptable and 51% said it was unacceptable. But acceptance jumped to 39% if the enhancement was in somatic cells, and only 35% objected.
Such results suggest that theres not a general, broad opposition to this technology, says co-author Dietram Scheufele, who specializes in science communication at UW Madison. But the survey does show very clearly that, if you look at germline enhancement in particular, thats where you see the majority of the of public expressing concern.
Such concerns are in line with previous surveys that have shown people dont like the idea of creating designer babies or populations of superhumans who pass down advantages to their offspring. But respondents to this survey were more tolerant of individuals using gene editing to improve their own bodies. For example, 59% supported using genome editing to treat a medical condition or enhance health.
But a persons religious beliefs affected their views. In people who reported low religious guidance, support for using genome editing to enhance health jumped to 79%; in the religious, it dropped to 50%.
The researchers also asked nine factual questions about genome editing and found sharp differences in support for both treatment and enhancement based on knowledge. In respondents who could not answer any of the nine questions correctly, support for treatment fell to 32% and enhancement to only 19%. Among those who answered at least six questions correctly, support for treatment rose to 76%, and for enhancement to 41%.
The Pew Research Center in Washington, D.C., conducted one of the earlier surveys that revealed hesitancy, finding that 68% of the respondents were very or somewhat worried about gene editing. But Cary Funk, a social psychologist at Pew who helped lead that 2016 survey, says those findings are broadly in keeping with the new survey, again underscoring the nuances. As Funk notes, both surveys show that public views about gene editing vary depending on whether the techniques would involve germline editing or testing on human embryos and that there are wide differences based on religious beliefs.
Scheufele says one of the surveys most important findings is that everyone wanted what he and his colleagues refer to as engagement in discussions about genome-editing regulation and policy. He says some of his colleagues have dismissed the need for such engagement because they contend its still too hypothetical: Scientists and clinicians cant yet safely and efficiently do the types of genome editing that are being envisioned. That argument is faulty, Scheufele says. We need to have the discussion exactly because the science isnt there yet. Once we can do it, the question becomes should we? and that should be answered long before we get there.
The U.S. National Academy of Sciences and National Academy of Medicine in February published an influential report, Human Genome Editing: Science, Ethics, and Governance, that has an entire chapter on public engagement. The natural question that follows [the new survey] is what kind of public engagement? says UW Madisons Alta Charo, a bioethicst and lawyer who co-chaired the academies committee that wrote the report. (Scheufele was also on the committee.) Charo, who was not involved in the new survey, notes that engagement can mean everything from teaching classes to holding meetings that join scientists with religious leaders, or give the public a forum to express views and concerns to policymakers.
Scheufele acknowledges that public engagement remains a fuzzy concept. He notes that the Royal Society in London has held meetings aimed at improving engagement, but U.S. groups dont really have the infrastructure in place. We need a much bigger structure for public engagement or otherwise it becomes handwaving.
He and his team now are planning to conduct a survey about what kinds of engagement mechanisms could help avoid the sort of polarization seen in policy debates over genetically modified crops or climate change. How can we have those broader discussions without falling into the trap of our values dividing us more and more, he says, and instead have a productive discussion that allows us to move forward?
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Scientists de-bug pig genome in preparation for farming organ donors – Ars Technica
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After a thorough antivirus scan, de-bugged pigs are a step closer to growing organs for us.
Researchers used the latest gene editing technology to deactivate 25 remnants of ancient viruses, called porcine endogenous retroviruses (PERVs), that had embedded in the DNA of a pig cell line. Pig genomes are rife with lurking PERVs, which threaten to emerge and infect humans. But with a genome wiped of active viruses, the researchers produced 37 piglets that are PERV-free. Thecreation of those clean little porkers, reported Thursday in Science, is progress toward using pigs as human organ donors, the researchers say.
Our study highlighted the value of PERV inactivation to prevent cross-species viral transmission and demonstrated the successful production of PERV-inactivated animals to address the safety concern in clinical xenotransplantation, the authors concluded.
Researchers have always worried about PERVs in pig-to-human transfers. The retroviruses, which are passed on through hog generations, have never proven to transmit to humansno human PERV disease cases have ever been reported, even in patients who have received pig tissue transplants. Still, the concern lingers. And in labs, PERVs can jump from pig cells to human cells.
Researchers saw this first hand in the new study, led by Harvard geneticist George Church and Luhan Yang, a bioengineer and president of eGenesis, a biotech start-up she and Church co-founded. Before sweeping away PERVs from a pig cell line, they showed that PERVs from a line of pig cells infected a line of human cells when researchers grew them together. And that infected line of human cells infected another line of human cells when researchers grew them together.
Theres still a lot of work ahead to turn the swine into human organ factories. And its unclear if researchers will end up needing PERV-free piglets for the feat. But for now, Church, Yang, and their team think their new pigs may serve as a foundation pig strain, which can be further engineered to provide safe and effective organ and tissue resources for xenotransplantation.
Science, 2017. DOI: 10.1126/science.aan4187 (About DOIs).
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New technique searches ‘dark genome’ for disease mutations – Medical Xpress
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August 10, 2017 Credit: CC0 Public Domain
When doctors can't find a diagnosis for patient's disease, they turn to genetic detectives. Equipped with genomic sequencing technologies available for less than 10 years, these sleuths now routinely search through a patient's DNA looking for mutations responsible for mysterious diseases.
Despite many successes, the search still comes back empty more often than not. In fact, disease-causing mutations are found in only about 1 in 3 to 4 patients suspected of having a strongly genetic condition.
A big reason why most investigations turn up empty-handed is the "dark genome." Only 2 percent of the human genome is well understood by scientists. This small fraction contains the 20,000 genes that encode instructions for making the cell's proteins. The remaining 98 percentthe "dark genome"is largely a mystery. Although it's known that the dark, non-coding genome regulates genesturning them on and off, for examplethe details remain obscure.
As a consequence, sequencing data from the entire genome "is currently considered almost uninterpretable," says David Goldstein, PhD, the John E. Borne Professor of Medical and Surgical Research and Director of the Institute for Genomic Medicine at Columbia University Medical Center, and today's genetic detectives restrict their search for disease-causing mutations to the sliver of genome that contains protein-coding genes.
To help locate pathogenic mutations in the vast non-coding genome, Goldstein and his colleagues Ayal Gussow and Andrew Allen have developed a new technique called Orion. Orion is designed to flag regions of the non-coding genome that are likely to contain disease-causing genetic changes by identifying parts of the genome that are under selection in the human population.
"We anticipate that researchers will immediately start using Orion to help them find pathogenic mutations in patients in which previous sequencing efforts were negative," says Dr. Goldstein. Details about the method were published online today in PLOS ONE.
Orion was developed by comparing the entire genomes of 1,662 people with one another and identifying stretches of DNA that vary little from person to person. Because these regions are "intolerant" to change, they are most likely doing something important, says Dr. Goldstein, lead author of the paper.
That means a mutation in an intolerant region is more likely to cause disease than a mutation in a tolerant (read: less important) region. This prediction was confirmed when the researchers mapped the locations of previously identified non-coding mutations: more mutations fell within Orion's intolerant regions.
Previous methods to explore the non-coding genome focused on areas of the non-coding genome that have been retained in multiple species over evolutionary time, suggesting they, too, have an important function. However, this approach is not able to identify regions of the genome that have taken on important new functions in humans.
Orion isn't yet a finished product, Goldstein says. As more genomes are sequenced, the resolution of Orion's regions will improve dramatically.
"At that point, we are optimistic that Orion will constitute one helpful tool in the effort to identify variants throughout the genome that influence the risk of both rare and common diseases, says Dr. Goldstein.
Explore further: Exome sequencing unravels rare disease mysteries
More information: Orion: Detecting Regions of the Human Non-Coding Genome, PLOS ONE (2017).
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UW Study Finds People Want To Talk About Genome Editing – Wortfm
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UW Life Sciences Communication professors Dietram Scheufele and Dominique Brossard conducted one of the first national surveys to gauge public opinion surrounding genome editing.
Their study dove into the nuances of DNA editing asking participants their opinions on both editing DNA for just one individual, or making changes that would be passed down through generations. There are now genetic tests for sickle-cell anemia, Tay-Sachs disease, and Down syndrome, among others. Could these genes simply be edited out of the population? Harvard scientists have also announced today that gene-edited piglets could potentially be used for growing organs for human transplants.
Scheufele says, surprisingly, people arent totally opposed to making changes that would get passed down.
People distinguished very clearly between therapeutic uses and enhancement uses, Scheufele says. So if its about curing diseases, people are much more open to the idea of making edits that will be passed on through generations.
Nearly two-thirds of respondents said they support editing genes that would be passed down through generations if it meant preventing disease. Only a quarter of people supported editing those kinds of cells for cosmetic purposes, though to enhance a persons physical traits or appearance.
The study also gauged how religious respondents are, along with how much they already know about the topic. People with strong religious beliefs were both more hesitant of the technology and more doubtful that the scientific community would be able to properly regulate this technology.
People who knew more about the technology, though, were more optimistic. What didnt differ much? Their desire to be part of the conversation.
We may differ in our attitudes toward that new technology, but a lot of us agree that we really do want to be part of the conversations about some of the ethical, moral and political questions that this new technology raises.
Scheufele says the technology opens the door to practically endless moral questions Who will have access to the technology? Will it put pressure on parents to modify their kids? What long-term effects will this have on the human population?
Scheufele says often people regard those questions as premature, since the technology hasnt come that far. But he disagrees, and so do many of his respondents.
My argument would be given how complex and how challenging some of those moral questions are, we need to have the conversation long before the technology arrives, and not wait until the technologys here and not have the time to weigh them through carefully, Scheufele says.
And he says the conversation will be important as the technology continues to develop. Public conversations around a topic have shifted the direction of technology in the past especially in the case of stem cells.
Maybe theres ways in which we roll this out thats different than we originally planned, Scheufele says.
The study was published this week in the journal Science.
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