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ArcherDX drops IPO plans in favor of a $1.4B takeover by Invitae – FierceBiotech
Posted: June 24, 2020 at 6:04 am
Personalized cancer test developer ArcherDX is walking away from plans to take itself public and into the arms of genetic testing company Invitae.
Earlier this month, ArcherDX announced it was filing for a $100 million Nasdaq IPObut instead it will reap a deal worth $1.4 billion, counting upfront cash, Invitae shares and future milestone payments. The two companies plan to integrate their genomics, tumor profiling and liquid biopsy technologies through one, overarching service.
"From the beginning, Invitae's goal has been to aggregate the world's genetic tests into a single platform in service of our mission to bring comprehensive genetic information into mainstream medicine. Today, we take another major step forward in that effort, Invitae co-founder and CEO Sean George said in a statement.
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The transaction begins with $325 million in cash plus 30 million shares of Invitae common stock; an additional 27 million shares are linked to milestones. The move has been approved by the boards of both companies and is expected to close within several months, the companies said.
To help carry the acquisition, Invitae has set up a strategic financing with over $400 million in commitments from investors, led by Perceptive Advisors. Invitae has agreed to sell $275 million of stock in a private placement at $16.85 a share, supported by Casdin Capital, Deerfield Management, Driehaus Capital Management, Farallon, PBM Capital, Redmile Group, Rock Springs Capital, Soleus Capital and an unnamed institutional investor.
RELATED: ArcherDX expands co-marketing, in vitro diagnostics partnerships with Illumina
Invitae has also secured a credit facility for up to $200 million with Perceptive Credit Opportunities Funds. Following the deals announcement, Invitaes stock rose nearly 50% from about $18 to over $26 a share.
We are thrilled to unite with Invitae to form the leading hub for precision oncology, diagnostics, therapy optimization and monitoring, with an opportunity to accelerate both patient care and shareholder value," said ArcherDXs co-founder and CEO Jason Myers.
ArcherDX currently counts over 325 unique products in its research services catalog and is developing in vitro cancer diagnostics with FDA submissions slated for later this year. The companys Stratafide DX and Personalized Cancer Monitoring efforts have both received breakthrough device designations from the agency.
ArcherDX also recently launched separate collaborations with AstraZeneca and Bristol Myers Squibb to apply its minimal residual disease assays to the drugmakers clinical cancer research.
RELATED: Invitae to buy DNA-counseling chatbot developer Clear Genetics for $50M
Together, the two companies aim to offer research and clinical trial support to biopharma companies as well as biomarker identification and companion diagnostic development while providing test reports, consultations and genetic counseling through Invitaes central laboratory.
"Integrating all aspects of cancer genetics can transform care for patients and the flexibility that comes from both centralized and decentralized capabilities will uniquely position Invitae to meet the needs of customers worldwide," said George. "By joining together, we will unite world-class capabilities in the hands of a talented team with complementary expertise and strong brands in service of a shared goal to improve healthcare for patients."
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COVID19 Impact- Global DNA and RNA Sample Preparation Market Recent Industry Developments and Growth Strategies Adopted by Top Key Players Agilent…
Posted: at 6:04 am
Global DNA and RNA Sample Preparation Market: Trends Estimates High Demand by 2027
DNA and RNA Sample Preparation Market report 2020, discusses various factors driving or restraining the market, which will help the future market to grow with promising CAGR. The DNA and RNA Sample Preparation Market research Reports offers an extensive collection of reports on different markets covering crucial details. The report studies the competitive environment of the DNA and RNA Sample Preparation Market is based on company profiles and their efforts on increasing product value and production.
DNA and RNA Sample Preparation research study involved the extensive usage of both primary and secondary data sources. The research process involved the study of various factors affecting the industry, including the government policy, market environment, competitive landscape, historical data, present trends in the market, technological innovation, upcoming technologies and the technical progress in related industry, and market risks, opportunities, market barriers, and challenges.
The final report will add the analysis of the Impact of Covid-19 in this report DNA and RNA Sample Preparation industry.
Adapting to the recent novel COVID-19 pandemic, the impact of the COVID-19 pandemic on the global DNA and RNA Sample Preparation market is included in the present report. The influence of the novel coronavirus pandemic on the growth of the DNA and RNA Sample Preparation market is analyzed and depicted in the report.
Some of the companies competing in the DNA and RNA Sample Preparation market are: Agilent Technologies, Becton, Dickinson and Company, Bio-Rad Laboratories Inc., DiaSorin S.p.A., F. Hoffmann-La Roche, Illumina, PerkinElmer, QIAGEN, Sigma Aldrich Corp., Tecan Group AG ., and Thermo Fisher Scientific
Get a Sample Copy of the [emailprotected] https://www.reportsandmarkets.com/sample-request/covid-19-impact-on-global-dna-and-rna-sample-preparation-market-size-status-and-forecast-2020-2026?utm_source=coleofduty&utm_medium=34
The report scrutinizes different business approaches and frameworks that pave the way for success in businesses. The report used Porters five techniques for analyzing the DNA and RNA Sample Preparation Market; it also offers the examination of the global market. To make the report more potent and easy to understand, it consists of info graphics and diagrams. Furthermore, it has different policies and development plans which are presented in summary. It analyzes the technical barriers, other issues, and cost-effectiveness affecting the market.
Global DNA and RNA Sample Preparation Market Research Report 2020 carries in-depth case studies on the various countries which are involved in the DNA and RNA Sample Preparation market. The report is segmented according to usage wherever applicable and the report offers all this information for all major countries and associations. It offers an analysis of the technical barriers, other issues, and cost-effectiveness affecting the market. Important contents analyzed and discussed in the report include market size, operation situation, and current & future development trends of the market, market segments, business development, and consumption tendencies. Moreover, the report includes the list of major companies/competitors and their competition data that helps the user to determine their current position in the market and take corrective measures to maintain or increase their share holds.
What questions does the DNA and RNA Sample Preparation market report answer pertaining to the regional reach of the industry
The report claims to split the regional scope of the DNA and RNA Sample Preparation market into North America, Europe, Asia-Pacific, South America & Middle East and Africa. Which among these regions has been touted to amass the largest market share over the anticipated duration
How do the sales figures look at present How does the sales scenario look for the future
Considering the present scenario, how much revenue will each region attain by the end of the forecast period
How much is the market share that each of these regions has accumulated presently
How much is the growth rate that each topography will depict over the predicted timeline
The scope of the Report:
The report segments the global DNA and RNA Sample Preparation market on the basis of application, type, service, technology, and region. Each chapter under this segmentation allows readers to grasp the nitty-gritties of the market. A magnified look at the segment-based analysis is aimed at giving the readers a closer look at the opportunities and threats in the market. It also address political scenarios that are expected to impact the market in both small and big ways.The report on the global DNA and RNA Sample Preparation market examines changing regulatory scenario to make accurate projections about potential investments. It also evaluates the risk for new entrants and the intensity of the competitive rivalry.
Reasons for Read this Report
This report provides pin-point analysis for changing competitive dynamics
It provides a forward looking perspective on different factors driving or restraining market growth
It provides a six-year forecast assessed on the basis of how the market is predicted to grow
It helps in understanding the key product segments and their future
It provides pin point analysis of changing competition dynamics and keeps you ahead of competitors
It helps in making informed business decisions by having complete insights of market and by making in-depth analysis of market segments
TABLE OF CONTENT:
Chapter 1: DNA and RNA Sample Preparation Market Overview
Chapter 2: Global Economic Impact on Industry
Chapter 3: DNA and RNA Sample Preparation Market Competition by Manufacturers
Chapter 4: Global Production, Revenue (Value) by Region
Chapter 5: Global Supply (Production), Consumption, Export, Import by Regions
Chapter 6: Global Production, Revenue (Value), Price Trend by Type
Chapter 7: Global Market Analysis by Application
Chapter 8: Manufacturing Cost Analysis
Chapter 9: Industrial Chain, Sourcing Strategy and Downstream Buyers
Chapter 10: Marketing Strategy Analysis, Distributors/Traders
Chapter 11: DNA and RNA Sample Preparation Market Effect Factors Analysis
Chapter 12: Global DNA and RNA Sample Preparation Market Forecast to 2027
About Us:
Reports And Markets is part of the Algoro Research Consultants Pvt. Ltd. and offers premium progressive statistical surveying, market research reports, analysis & forecast data for industries and governments around the globe. Are you mastering your market? Do you know what the market potential is for your product, who the market players are and what the growth forecast is? We offer standard global, regional or country specific market research studies for almost every market you can imagine.
Contact Us:
Sanjay Jain
Manager Partner Relations & International Marketing
http://www.reportsandmarkets.com
Ph: +1-352-353-0818 (US)
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COVID19 Impact- Global DNA and RNA Sample Preparation Market Recent Industry Developments and Growth Strategies Adopted by Top Key Players Agilent...
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Novak Djokovic tests positive for COVID-19, joins list of infected tennis players who appeared in Adria Tour – DNA India
Posted: at 6:04 am
Tennis world number one Novak Djokovic has been tested positive for coronavirus, joining a slew of other infected players who took part in his Adria Tour exhibition tournament in the Balkans.
"Novak Djokovic tested positive for a virus COVID-19," read a statement from his staff. "He is not showing any symptoms," it added.
Djokovic's wife Jelena also tested positive while the results of their children are negative, the statement read.Everything we did in the past month we did with a pure heart and sincere intentions, the statement reads.
I am extremely sorry for each individual case of infection.
The other tennis stars who have been tested positive are Grigor Dimitrov, Borna Coric, and Viktor Troicki
The tournament, which also had top names such as Dominic Thiem and Alexander Zverev, was held in Belgrade, and Zadar and the players were also pictured playing basketball and dancing together without following social distancing protocols, Reuters reported.
As for Zverev, the German tennis star on Monday confirmed that he and his team have tested negative for coronavirus.
"I have just received the news that my team and I have tested negative for COVID-19. I deeply apologize to anyone that I have potentially put at risk by playing this tour. I will proceed to follow the self-isolating guidelines advised by our doctors. As an added precaution, my team and I will continue with regular testing. I wish everyone who has tested positive a speedy recovery. Stay safe," Zverev wrote on Twitter.
The ATP and WTA Tours, which were suspended in March due to the pandemic, are set to resume in August with the US Open and French Open beginning on August 31 and September 27, respectively.
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Novak Djokovic tests positive for COVID-19, joins list of infected tennis players who appeared in Adria Tour - DNA India
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Research on DNA and Gene Chips Market (impact of COVID-19) with Top Players: Bio MrieuxSA, Thermo Fisher Scientific Inc., Savyon Diagnostics, Agilent…
Posted: at 6:04 am
Global DNA and Gene Chips Market: Trends Estimates High Demand by 2027
The DNA and Gene Chips Market 2020 report includes the market strategy, market orientation, expert opinion and knowledgeable information. The DNA and Gene Chips Industry Report is an in-depth study analyzing the current state of the DNA and Gene Chips Market. It provides a brief overview of the market focusing on definitions, classifications, product specifications, manufacturing processes, cost structures, market segmentation, end-use applications and industry chain analysis. The study on DNA and Gene Chips Market provides analysis of market covering the industry trends, recent developments in the market and competitive landscape.
It takes into account the CAGR, value, volume, revenue, production, consumption, sales, manufacturing cost, prices, and other key factors related to the global DNA and Gene Chips market. All findings and data on the global DNA and Gene Chips market provided in the report are calculated, gathered, and verified using advanced and reliable primary and secondary research sources. The regional analysis offered in the report will help you to identify key opportunities of the global DNA and Gene Chips market available in different regions and countries.
The final report will add the analysis of the Impact of Covid-19 in this report DNA and Gene Chips industry.
Some of The Companies Competing in The DNA and Gene Chips Market are: Bio MrieuxSA, Thermo Fisher Scientific Inc., Savyon Diagnostics, Agilent Technologies, Applied Micro Arrays Illumina Inc., Toshiba Hokuto Electronics Corporation, TOSHIBA Perkin Elmer Inc., Oxford Gene Technology, Arrayit Corporation, MYcroarray Macrogen Inc., Greiner Bio One, Asper Biotech, CapitalBio Corporation, and Microarrays Inc.
Get a Sample Copy of the [emailprotected] https://www.reportsandmarkets.com/sample-request/covid-19-impact-on-global-dna-and-gene-chips-market-size-status-and-forecast-2020-2026?utm_source=coleofduty&utm_medium=24
The report scrutinizes different business approaches and frameworks that pave the way for success in businesses. The report used Porters five techniques for analyzing the DNA and Gene Chips Market; it also offers the examination of the global market. To make the report more potent and easy to understand, it consists of info graphics and diagrams. Furthermore, it has different policies and improvement plans which are presented in summary. It analyzes the technical barriers, other issues, and cost-effectiveness affecting the market.
Global DNA and Gene Chips Market Research Report 2020 carries in-depth case studies on the various countries which are involved in the DNA and Gene Chips market. The report is segmented according to usage wherever applicable and the report offers all this information for all major countries and associations. It offers an analysis of the technical barriers, other issues, and cost-effectiveness affecting the market. Important contents analyzed and discussed in the report include market size, operation situation, and current & future development trends of the market, market segments, business development, and consumption tendencies. Moreover, the report includes the list of major companies/competitors and their competition data that helps the user to determine their current position in the market and take corrective measures to maintain or increase their share holds.
What questions does the DNA and Gene Chips market report answer pertaining to the regional reach of the industry?
The report claims to split the regional scope of the DNA and Gene Chips market into North America, Europe, Asia-Pacific, South America & Middle East and Africa. Which among these regions has been touted to amass the largest market share over the anticipated duration
How do the sales figures look at present how does the sales scenario look for the future?
Considering the present scenario, how much revenue will each region attain by the end of the forecast period?
How much is the market share that each of these regions has accumulated presently
How much is the growth rate that each topography will depict over the predicted timeline
A short overview of the DNA and Gene Chips market scope:
Global market remuneration
Overall projected growth rate
Industry trends
Competitive scope
Product range
Application landscape
Supplier analysis
Marketing channel trends Now and later
Sales channel evaluation
Market Competition Trend
Market Concentration Rate
Reasons to Read this Report
This report provides pin-point analysis for changing competitive dynamics
It provides a forward looking perspective on different factors driving or restraining market growth
It provides a six-year forecast assessed on the basis of how the market is predicted to grow
It helps in understanding the key product segments and their future
It provides pin point analysis of changing competition dynamics and keeps you ahead of competitors
It helps in making informed business decisions by having complete insights of market and by making in-depth analysis of market segments
TABLE OF CONTENT:
Chapter 1:DNA and Gene Chips Market Overview
Chapter 2: Global Economic Impact on Industry
Chapter 3:DNA and Gene Chips Market Competition by Manufacturers
Chapter 4: Global Production, Revenue (Value) by Region
Chapter 5: Global Supply (Production), Consumption, Export, Import by Regions
Chapter 6: Global Production, Revenue (Value), Price Trend by Type
Chapter 7: Global Market Analysis by Application
Chapter 8: Manufacturing Cost Analysis
Chapter 9: Industrial Chain, Sourcing Strategy and Downstream Buyers
Chapter 10: Marketing Strategy Analysis, Distributors/Traders
Chapter 11: DNA and Gene Chips Market Effect Factors Analysis
Chapter 12: GlobalDNA and Gene Chips Market Forecast to 2027
Get Complete Report @ https://www.reportsandmarkets.com/sample-request/covid-19-impact-on-global-dna-and-gene-chips-market-size-status-and-forecast-2020-2026?utm_source=coleofduty&utm_medium=24
About Us:
Reports And Markets is part of the Algoro Research Consultants Pvt. Ltd. and offers premium progressive statistical surveying, market research reports, analysis & forecast data for industries and governments around the globe. Are you mastering your market? Do you know what the market potential is for your product, who the market players are and what the growth forecast is? We offer standard global, regional or country specific market research studies for almost every market you can imagine.
Contact Us:
Sanjay Jain
Manager Partner Relations & International Marketing
http://www.reportsandmarkets.com
Ph: +1-352-353-0818 (US)
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Research on DNA and Gene Chips Market (impact of COVID-19) with Top Players: Bio MrieuxSA, Thermo Fisher Scientific Inc., Savyon Diagnostics, Agilent...
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Human Genetics Market Analysis with Key Players, Applications, Trends and Forecasts to 2026 – Farmers Ledger
Posted: at 5:53 am
The Human Genetics market report Added by Market Study Report, LLC, enumerates information about the industry in terms of market share, market size, revenue forecasts, and regional outlook. The report further illustrates competitive insights of key players in the business vertical followed by an overview of their diverse portfolios and growth strategies.
The research report on Human Genetics market offers a thorough analysis of this industry vertical, while evaluating all the segments of the market. The study provides significant information concerning the key industry players and their respective gross earnings. Additionally, crucial insights regarding the geographical landscape as well as the competitive spectrum are entailed.
Request a sample Report of Human Genetics Market at:https://www.marketstudyreport.com/request-a-sample/2468209?utm_source=farmersledger&utm_medium=RV
Highlighting the main pointers of the Human Genetics market report:
In-depth analysis of the regional scope of Human Genetics market:
Emphasizing on the competitive spectrum of Human Genetics market:
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Other insights associated with the Human Genetics market research report:
This report considers the below mentioned key questions:
Q.1. What are some of the most favorable, high-growth prospects for the global Human Genetics market?
Q.2. Which products segments will grow at a faster rate throughout the forecast period and why?
Q.3. Which geography will grow at a faster rate and why?
Q.4. What are the major factors impacting market prospects? What are the driving factors, restraints, and challenges in this Human Genetics market?
Q.5. What are the challenges and competitive threats to the market?
Q.6. What are the evolving trends in this Human Genetics market and reasons behind their emergence?
Q.7. What are some of the changing customer demands in the Human Genetics Industry market?
Table of Contents:
Executive Summary: It includes key trends of the Human Genetics market related to products, applications, and other crucial factors. It also provides analysis of the competitive landscape and CAGR and market size of the Human Genetics market based on production and revenue.
Production and Consumption by Region: It covers all regional markets to which the research study relates. Prices and key players in addition to production and consumption in each regional market are discussed.
Key Players: Here, the report throws light on financial ratios, pricing structure, production cost, gross profit, sales volume, revenue, and gross margin of leading and prominent companies competing in the Human Genetics market.
Market Segments: This part of the report discusses about product type and application segments of the Human Genetics market based on market share, CAGR, market size, and various other factors.
Research Methodology: This section discusses about the research methodology and approach used to prepare the report. It covers data triangulation, market breakdown, market size estimation, and research design and/or programs.
For More Details On this Report: https://www.marketstudyreport.com/reports/global-human-genetics-market-size-status-and-forecast-2020-2026
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Building Genetic Diversity Into Cancer Research – Cancer Health Treatment News
Posted: at 5:53 am
Scientists at Fred Hutchinson Cancer Research Center have long sought to correct the Eurocentric bias in research, particularly when it comes to cancer prevention.
We currently have a cancer risk prediction score that works in people of European descent, saidUlrike Riki Peters, PhD, MPH, a molecular and genetic epidemiologist whos been focused on this issue for more than a decade. But it doesnt predict cancer risk well in Latinx populations or Asians or African Americans or Native populations or others.
Current prevention tools like risk calculators dont work well in racially or ethnically diverse populations because theyre based primarily on the genetic data of whites about80% of the DNAsequenced by the Human Genome Project was from people of European ancestry. As a result, theyre missing the full range ofgenetic variantsthat are possible in the human genome.
Genetic research is predominantly conducted in European-descent populations that leads to a bias in the genetic risk variants that have been identified, Peters said.
And thats bad for everybody.
Without the DNA of Black and Latinx populations, Native Americans, and other racial and ethnic minorities, you cant get afullunderstanding of the human genome. You cant truly tell which genes are linked to cancer and other common diseases.
For genetics, its key to have racial and ethnic diversity, saidLi Hsu, PhD, a Hutch biostatistician. We are missing opportunities to identify important risk factors in these populations. Plus, it will teach us about biology overall and point us to new drug targets that can benefit anyone.
Now, with a $3.5 million award from the National Cancer Institute, Peters, Hsu and others are launching an ambitious effort to build more equity into cancer risk prediction. Their aim: creating and disseminating colorectal cancer risk-prediction models also known polygenic risk scores for the multiethnic populations that need them.
Eventually, these nuanced models will be used to inform screening and prevention strategies in colorectal cancers and, they hope, beyond.
Strength in Numbers
The five-year study will be conducted through theGECCO research collaboration, which Peters launched more than 10 years ago.
The Genetics and Epidemiology of Colorectal Cancer Consortium manages the genetic and epidemiological data of over 130,000 study participants from 70 studies across North America, Australia, Asia and Europe. Fred Hutch acts as GECCOs data coordinating center; Peters is the consortiums principal investigator as well as the PI of the new study, along with co-investigator Hsu.
GECCOs strength lies in its numbers. By running genome-wide association studies, or GWAS, of very large cohorts, theyve been able to identify a number of new germline, or inherited, mutations that either help or hinder the development of colorectal cancer. Theyve also accumulated extensive data on mutations that happen as a result of environmental or lifestyle exposures.
By adding up and weighing all the tiny genetic variants that can accumulate to produce a cancer, then folding in mutations or interactions that occur as a result of other exposures (think body weight, red meat consumption, alcohol and tobacco use), GECCOs researchers can create polygenic risk scores that can help pinpoint who needs to be screened early and who doesnt.
Currentguidelinesrecommend people of average risk get a colonoscopy, sigmoidoscopy or other test starting at age 50. But for three decades, colorectal cancer has been steadily increasing in peopleunder50. These early-onset cancers disproportionately affect minority populations, and both incidenceandmortality of colorectal cancer are highest in Black populations.
One option would be to lower the screening age, but that could put a huge burden on the health care system, said genetic epidemiologist Tabitha Harrison, who manages GECCOs coordinating center at the Hutch.
Youd havean additional21million peopleeligiblefor screening and that would increase health disparities since more people would be competing for limited resources, she said.
A better solution is to take the time and fix the bias now, the researchers said.
Currently, the accuracy rate of GECCOs risk-prediction model is about 64% in people under 50 and about 81% for people over 50. Thats if youre white. In nonwhites, their tool is much less effective.
The GECCO researchers believe they can do better.
Theres a lot of hype about precision medicine, about using peoples genetic risk scores to define peoples risk for disease, said Jeroen Huyghe, PhD, a statistical geneticist on the project. We cant just apply a precision model to white people. We have to apply it to all racial groups. Its important to do this now.
Harrison said using biased polygenic risk scores to inform prevention in people of color has major scientific and ethical limitations.
GWAS studies have so far been overwhelmingly Eurocentric, she said.
Personalized Cancer Prevention
For this study, the GECCO team will amass a new cohort of 121,000 colorectal cancer patients of different ethnic backgrounds from patient registries, studies and even commercial entities around the world everything from the Black Womens Health Study to the Japan Public Health Study to the Hispanic Colorectal Cancer Study to 23andMe.
By analyzing these participants existing genome-wide and epidemiological data, theyll create a risk-prediction model or risk score (or scores) for a racially and ethnically diverse population.
It would be nice to develop one score that would work across all racial and ethnic groups but we dont know if that will work, Peters said. So, well explore. Our research goal is to develop thebestrisk-prediction model. If that means we have to develop one for each racial/ethnic group, there will be multiple scores.
Once developed, these scores will help personalize the screening recommendations for various types of patients, each with different environmental exposures and inherited risks, to pinpoint those most at risk. These individuals would be tapped for an early screening, even if they dont meet the current age and family history requirements.
Theyll then use a microsimulation model developed by investigators from Erasmus University in the Netherlands to see how this screening strategy translates into clinical practice.
These types of models provide a relatively inexpensive way to estimate population-level effects including costs and benefits of policy change, Hsu said. Based on observational and experimental results and expert opinions, the model will simulate the cancer development process in a large number of individuals, from adenoma formation to colorectal cancer and mortality.
Bringing It to the Community
After validation and testing, the GECCO team will work with research partners at Moffitt Cancer Center in Florida to create a culturally appropriate, web-based risk communication tool i.e., a precision prevention app of sorts to disseminate information to patients and their health care providers.
Throughout the study, the GECCO team will work with a multiethnic community advisory board, or CAB, to ensure the results of the study as well as the new app communicate the information in a racially and ethnically sensitive way.
At each stage, we will review findings and seek guidance from our community advisory board, Peters said.
Though ambitious, Peters said the project is of great importance, especially as biased polygenic risk scores continue to be pushed out to consumers.
The limitations havent stopped a growing number of companies from commercializing European-derived polygenic risk scores, she said.
And thats a huge problem, colleagues agreed.
Using risk scores prematurely to inform colorectal cancer screening guidelines could exacerbate existing disparities in screening and survival rates, Huyghe said. Its critically important that we increase racial/ethnic diversity in genetic studies.
This article was originally published on June 18, 2020, by Hutch News. It is republished with permission.
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Drugging the Undruggable: How AI Does the (Almost) Impossible – BioSpace
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Artificial intelligence (AI) is amplifying the pace of drug development, allowing developers to attack otherwise intractable problems and achieve results in weeks. Previously, results may have been impossible within any time frame.
As an example of the power of AI in drug development, Abraham Heifets, co-founder and CEO of Atomwise, gave the example from a commercial collaborator that was targeting a kinase as a cancer therapeutic. As a panelist at the Demy-Colton Virtual Salon Series, Drugging the Undruggable: The Power of Artificial Intelligence, he pointed out that many of the biggest companies in the pharma and biotech industries had pursued that target but all failed because of unacceptable cardiotoxicity.
AI succeeded. Approximately 99.999% of the molecules available to chemists dont exist, but are available on demand, he said.
Therefore, Atomwise ran a massive screen. It found a two-amino acid difference was all that distinguished the kinase that induced heart attacks from the one that, he said, potentially could cure cancer.
Verge Genomics uses AI to go directly to human models of disease, leapfrogging animal models. As Alice Zhang, co-founder and CEO, explained on the panel, I was frustrated at the lack of human data for ALS, Parkinsons and Alzheimers diseases. Models based on animal research dont always translate to humans. By using artificial intelligence (AI), her company is going from to a clinical trial in about two years. A small molecule amyotrophic lateral sclerosis (ALS) program is expected to enter the clinic in 2021, and four more programs are likely to join it there within two years. To achieve this, Verge built one of the largest databases of brain tissue sequences in the world, with tissue from more than 6,000 human brains.
Another company, immunai, uses AI and single cell genetics to map the immune system response. This the culmination of a perfect intersection of incredibly robust computing power, interesting AI models and mountains of data, panelist Noam Solomon, co-founder and CEO of immunai, said. Were using AI to bring intelligence. It empowers us to make better decisions.
But what exactly is AI? Originally, AI was the technology behind image and speech recognition. It allowed pattern matching on an enormous scale. Its since evolved into convolutional neural networks (CNNs), a type of artificial neural network that learns much like the human brain. It is used to analyze visual imagery, process natural language and in a variety of other applications.
Atomwise was the first to apply CNNs to molecular recognition. It uses its Artificial Intelligence Molecular Screen (AIMS) program to predict the binding characteristics of billions of molecules to a protein of interest, and narrow them to a few hundred potential targets.
We are running the largest machine learning application in the world, Heifets said. We have more than 750 projects with 600 unique targets in 40 countries. With its proprietary AI engine, AtomNet, 16 billion molecules can be screened in a matter of days.
Its important to realize, though, that for AI to deliver accurate results, users must ask the right questions in the right way.
Big data is noisy, Solomon said. So first, clean the data.
Verge eliminated much of the noise by starting its work in human, rather than animal, models. Its researchers combined its brain sequence database with human genetics and overlaid that with human-derived neurons. That combination let researchers identify gene signatures or dysregulated networks that appear in patients but not in age-mapped controls. Then they can determine which variations are causal to the condition. Looking at the convergence is the smoking gun, Solomon said, that generates greater translational success.
Although AI applications are in the public domain, these entrepreneurs developed their own, proprietary, applications. If you have an assay, for example, how important is it to know the details of how it works? Heifets asked. To identify druggable from otherwise undruggable targets, his answer was, Very.
Training the AI and validating its results are the key. Select the parameters carefully and, for training, feed the results back into the AI so it can learn. That often requires exposing it to hundreds or thousands of variations with known outcomes and then ensuring it is focusing on the correct elements of an image or a sample to make its determination.
The two greatest challenges to successfully using AI are breaking down disciplinary silos and getting AI experts (who often are from academia) to adapt to a pharmaceutical environment, the panelists agreed. They have different assumptions, such as about the ability to publish or make their algorithms open source, for example, and typically dont have backgrounds in biology, virology or related fields. Therefore, they have different disciplinary languages. Talking together regularly to solve intractable problems helps bridge those initial differences.
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Seven Bridges Expands Its Pioneering Graph-Based Offerings to Advance Important Human Genome Research – P&T Community
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BOSTON, June 23, 2020 /PRNewswire/ -- Seven Bridges, the industry-leading bioinformatics ecosystem provider, today announced the broad availability of its graph-based methods of analysis for population genomics research addressing a longstanding concern about narrow applicability of existing genome analysis methods by using pan-genome graph references, which contain genomic variants from many populations around the world. These novel, game-changing methods will greatly improve the analysis of non-European ethnicities; support large, more diverse population studies; enable research on underrepresented populations; and aid in the development of personalized references for more precise analysis. Now available on all platforms powered by Seven Bridges, these latest graph-based methods build on the company's comprehensive offering of standard genome sequencing workflows. Seven Bridges is the first to offer a practical, scalable and accurate graph-based bioinformatics solution that effectively leverages known genomic variations of interest.
"Graph genomes have clearly emerged as the future of genetics research," said Bill Moss, CEO, Seven Bridges. "It is well known within the scientific community that the existing linear genome analysis methods do not work as well for non-European descent individuals and that they work poorly for African-descent individuals. This problem is solved by the diversity encoded in pan-genome graph references, which we employ in our latest, unprecedented offerings. I am proud that by providing the most comprehensive graph-based bioinformatics solution on the market, we are helping to drive innovative genomics research and more precise analysis for all populations."
Seven Bridges GRAF is an essential bioinformatics resource that transforms the existing linear human genome reference into a genome graph. A significant drawback to the linear reference is the inability to represent the genomic diversity of the human population, which creates a profound barrier to potentially life-saving research on non-European, understudied populations including African, Asian, Hispanic and Middle Eastern. Seven Bridges GRAF will help address the longstanding need for bioinformatics tools that can support genetics research to benefit diverse populations.
Seven Bridges GRAF enables:
Current benchmarks highlight GRAF as one of the most accurate INDEL callers in the world, able to detect even long INserted or DELeted sections in an individual's genome. INDELs contribute to much of the genomic diversity between human populations and have also been associated with many genetic disorders affecting patients around the world. However, challenges in accurately detecting INDELs, especially across diverse populations, have slowed progress in translating these findings into the clinic. GRAF removes these bottlenecks enabling researchers, geneticists and clinicians to accurately examine a more complete and representative view of an individual's genome.
Building on the strong foundation that Seven Bridges created with its initial graph genome offering, the company is now providing researchers with direct access to GRAF. Moreover, given the critical importance of making the core of scientific study more representative, Seven Bridges is providing the GRAF Germline Variant Detection Workflow and GRAF Pan Genome Referencefree of charge to academic researchers.
"Accurate detection of genetic variations for individuals from all backgrounds is essential to improving our understanding of disease and the development of targeted therapies," said Brandi Davis-Dusenbery, Chief Scientific Officer, Seven Bridges. "Even more to the point, it is critically important to the overall integrity, relevance and fundamental value of science. We feel strongly that academic researchers need easy access to these kinds of bioinformatics tools if they are to effectively advance the inclusive scope and meaningfulness of science which is why we are providing it to them at no cost."
To meet the needs of the research community, Seven Bridges will be expanding the GRAF product portfolio further with the release of additional population-specific and personalized workflows throughout 2020. Seven Bridges GRAF replaces the previous Graph Genome Suite offering. For information on GRAF, please visit sevenbridges.com/graf.
About Seven Bridges
Seven Bridges enables researchers to extract meaningful insights from genomic and phenotypic data in order to advance precision medicine. The Seven Bridges Ecosystem consists of a compliant analytic platform, intelligently curated content, transformative algorithms, unprecedented access to federated data sets, and expert on-demand professional services. This holistic approach to bioinformatics is enabling researchers at the world's leading academic, biotechnology, clinical diagnostic, government, medical centers, and pharmaceutical entities to increase R&D efficiency, enhance the hypothesis resolution process, isolate critical biomarkers, and even turn a failing clinical trial around while also reducing computational workflow times and data storage costs. To learn more, visit sevenbridges.com or follow us on LinkedIn and Twitter.
Media ContactsEric SchubertSeismic for Seven Bridges+1 415 692 6799sevenbridges@teamseismic.com
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Coronavirus news and updates: Does Florida’s spike in cases make it a new ‘epicenter’?; mask rules on airplanes from the FAA – USA TODAY
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How does coronavirus enter the body, and why does it become fatal for some compared to just a cough or fever for others? USA TODAY
As several states start to see a surge in COVID-19 cases since reopening, Ohio has not.
Ohio has gradually lifted its stay-at-home order over the past six weeks. The result: a plateau in newly reported cases and a decline in hospitalizations, both reported and estimates of people currently hospitalized. The trend in New York is alsolookinggood right now.
Florida, meanwhile, has had a noteworthy increase. Critics are saying Gov. Ron DeSantis is letting the outbreak get out of control but he is attributing the rise to more testing among low-risk individuals. He says he wont roll back reopening efforts.
CNN takes it a step further. They talked to an expert who said the state has the makings of becoming the "next large epicenter."
By the numbers:The coronavirus isn't going away anytime soon. Confirmed cases in the United States are more than 2.1 million, according to the Johns Hopkins University dashboard. America's death toll is nearing118,000. Globally, there are more than 8.4 million confirmed cases and almost450,000 people have died.
We want to hear your stories. Tell us how the pandemic has affected your life by recording a short audio clip for the Corona Diaries project.
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FYI:Employers cannot require COVID-19 antibody testing for employees returning to work, the EEOC says, but they can require other things of you. Read more from USA TODAY's Jessica Guynn.
'Smoke and mirrors':Coronavirus infections at meatpacking plants have risen from under 5,000 cases at the end of April to more than 24,000. President Donald Trump's meatpacking order has failed to keep workers safe, a USA TODAY investigation finds.
Can HIV research help find an answer? Researchers are diving deep into human genetics, hoping to find clues that might explain why many people brush off COVID-19 without even knowing they have it, while others are hospitalized or even die from the disease. Read more.
Can dogs sniff out coronavirus? Unclear, but USA TODAY's fact check team finds a claim that researchers are looking at dogs as a possible candidate to detect the disease is indeed true.
Please call for help if you need it.Thousands of anxious, stressed, isolated and uncertain callers are flooding helplines nationwide. They are teenagers and senior citizens. They have lost jobs, homes and relatives. Some express suicidal thoughts or fears that their positive COVID-19 test is a death sentence. Others reach out in the throes of a panic attack.Read more.
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Contributing: Jackie Borchardt, Cincinnati Enquirer; John Kennedy and Zac Anderson, Palm Beach Post
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Exposure and engagement with tobacco-related social media and associations with subsequent tobacco use among young adults: A longitudinal analysis. -…
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This study examines whether self-reported exposure to cigarette, e-cigarette, cigar, and hookah advertising, and engagement with pro-tobacco and anti-tobacco social media, are associated with past 30-day tobacco use one-year later, among young adults.Data were from two waves of the Marketing and Promotions Across Colleges in Texas study, a multi-wave study of two- and four-year Texas college students (N = 3947; M age = 23.3, SD = 2.3; 64% female; 35% white, 31% Hispanic, 19% Asian, 8% African-American/black, 7% multi-racial/other) from 24 urban-area schools. Multiple logistic regression examined longitudinal associations between recall of exposure and engagement at baseline (wave 6, spring 2017) and tobacco use at one-year follow-up (wave 7, spring 2018), accounting for baseline demographic characteristics and tobacco use.Self-reported exposure to and engagement with tobacco-related social media were significantly associated with past 30-day use of e-cigarettes, cigars, and hookah at one-year follow up; engagement was also associated with cigarette use. Controlling for other social media, exposure to any product advertising via Reddit increased risk for e-cigarette use (AOR = 1.92 [95% CI: 1.17-3.14]). Pinterest exposure increased risk for cigar use (2.92 [1.24-6.85]). Snapchat exposure increased risk for hookah use (2.94 [1.70-5.11]). Pro-tobacco engagement increased risk for future use of all products (1.77 [1.29-2.42]). Anti-tobacco engagement increased risk for use of cigars (1.59 [1.12-2.27]) and hookah (1.69 [1.27-2.25]).Findings demonstrate that encountering tobacco-related social media is an important risk factor for future tobacco use among young people. Social media should be a focus of federal regulation, counter-marketing and health communication campaigns, and intervention.Published by Elsevier B.V.
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