Category Archives: Transhuman News

Could humans ever evolve venom? It's highly unlikely that people will join rattlesnakes and platypuses among the ranks of venomous animals, but new research reveals that humans do have the tool kit to produce venom in fact, all reptiles and mammals do.

This collection of flexible genes, particularly associated with the salivary glands in humans, explains how venom has evolved independently from nonvenomous ancestors more than 100 times in the animal kingdom.

"Essentially, we have all the building blocks in place," said study co-author Agneesh Barua, a doctoral student in evolutionary genetics at the Okinawa Institute of Science and Technology in Japan. "Now it's up to evolution to take us there."

Related: Why do Cambrian creatures look so weird?

Oral venom is common across the animal kingdom, present in creatures as diverse as spiders, snakes and slow lorises, the only known venomous species of primate. Biologists knew that oral venom glands are modified salivary glands, but the new research reveals the molecular mechanics behind the change.

"It's going to be a real landmark in the field," said Bryan Fry, a biochemist and venom expert at The University of Queensland in Australia who was not involved in the research. "They've done an absolutely sensational job of some extraordinarily complex studies."

Venom is the ultimate example of nature's flexibility. Many of the toxins in venom are common across very different animals; some components of centipede venom, for example, are also found in snake venom, said Ronald Jenner, a venom researcher at the Natural History Museum in London who was not involved in the research.

The new study doesn't focus on toxins themselves, as those evolve quickly and are a complex mix of compounds, Barua told Live Science. Instead, Barua and study co-author Alexander Mikheyev, an evolutionary biologist at Australian National University who focuses on "housekeeping" genes, the genes that are associated with venom but aren't responsible for creating the toxins themselves. These regulatory genes form the basis of the whole venom system.

The researchers started with the genome of the Taiwan habu (Trimeresurus mucrosquamatus), a brown pit viper that is well studied, in part because it's an invasive species in Okinawa.

"Since we know the function of all the genes that were present in the animal, we could just see what genes the venom genes are associated with," Barua said.

The team found a constellation of genes that are common in multiple body tissues across all amniotes. (Amniotes are animals that fertilize their eggs internally or lay eggs on land; they include reptiles, birds and some mammals.) Many of these genes are involved in folding proteins, Barua said, which makes sense, because venomous animals must manufacture a large quantity of toxins, which are made of proteins.

"A tissue like this really has to make sure that the protein it is producing is of high quality," he said.

Unsurprisingly, the same sorts of regulatory housekeeping genes are found in abundance in the human salivary gland, which also produces an important stew of proteins found in saliva in large quantities. This genetic foundation is what enables the wide array of independently evolved venoms across the animal kingdom.

Related: Are you genetically more similar to your mom or your dad?

In other words, every mammal or reptile has the genetic scaffolding upon which an oral venom system is built. And humans (along with mice) also already produce a key protein used in many venom systems. Kallikreins, which are proteins that digest other proteins, are secreted in saliva; they're also a key part of many venoms. That's because kallikreins are very stable proteins, Fry said, and they don't simply stop working when subjected to mutation. Thus, it's easy to get beneficial mutations of kallikreins that make venom more painful, and more deadly (one effect of kallikreins is a precipitous drop in blood pressure).

"It's not coincidental that kallikrein is the most broadly secreted type of component in venoms across the animal kingdom, because in any form, it's a very active enzyme and it's going to start doing some messed-up stuff," Fry said.

Kallikreins are thus a natural starting point for theoretically venomous humans.

If after the drama of 2020, Barua joked, "people need to be venomous to survive, we could potentially start seeing increasing doses of kallikreins."

But that's not so likely not unless humans' currently successful strategies of acquiring food and choosing mates start falling apart, anyway. Venom most commonly evolves as either a method of defense or as a way of subduing prey, Jenner told Live Science. Precisely what kind of venom evolves depends heavily on how the animal lives.

Evolution can essentially tailor venom to an animal's needs via natural selection, Fry said. There are some desert snakes, for example, that have different venom despite being the same species, just due to where they live, he said: On the desert floor, where the snakes hunt mostly mice, the venom acts mostly on the circulatory system, because it's not difficult for a snake to track a dying mouse a short distance on flat ground. In nearby rocky mountains, where the snakes hunt mostly lizards, the venom is a potent neurotoxin, because if the prey isn't immediately immobilized, it can easily scamper into a crevice and disappear for good.

A few mammals do have venom. Vampire bats, which have a toxic saliva that prevents blood clots, use their chemical weapon to feed from wounds more effectively. Venomous shrews and shrew-like solenodons (small, burrowing mammals) can outpunch their weight class by using their venom to subdue larger prey than they could otherwise kill. Shrews also sometimes use their venom to paralyze prey (typically insects and other invertebrates) for storage and later snacking. Meanwhile, platypuses, which don't have a venomous bite but do have a venomous spur on their hind legs, mostly use their venom in fights with other platypuses over mates or territory, Jenner said.

Humans, of course, have invented tools, weapons and social structures that do most of these jobs without the need for venomous fangs. And venom is costly, too, Fry said. Building and folding all those proteins takes energy. For that reason, venom is easily lost when it isn't used. There are species of sea snakes, Fry said, that have vestigial venom glands but are no longer venomous, because they switched from feeding on fish to feeding on fish eggs, which don't require a toxic bite.

The new research may not raise many hopes for new superpowers for humans, but understanding the genetics behind the control of venom could be key for medicine, Fry added. If a cobra's brain were to start expressing the genes that its venom glands expressed, the snake would immediately die of self-toxicity. Learning how genes control expression in different tissues could be helpful for understanding diseases such as cancer, which causes illness and death in large part because tissues start growing out of control and secreting products in places in the body where they shouldn't.

"The importance of this paper goes beyond just this field of study, because it provides a starting platform for all of those kinds of interesting questions," Fry said.

The research was published online Monday (March 29) in the journal Proceedings of the National Academy of Sciences.

Originally published on Live Science.

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Could humans ever be venomous? - Livescience.com

Introduction

Leukodystrophies include a vast group of rare, multifarious genetic disorders that selectively and primarily affect the central nervous system (CNS) white matter. These disorders encompass defects in the generation, maintenance, and repair of white matter, and the primary molecular deficit may arise not only in myelin-producing oligodendrocytes but also in astrocytes, microglia, or other cell types.13 Several informative reviews published in the last several years provide broad overviews of inherited diseases of white matter, including those focused on childhood4 and adult-onset5,6 disorders. Here we will focus primarily on leukodystrophies that are apparently caused by primary microglial defects, disorders that are sometimes termed microgliopathies.7

Microglia are macrophages of the brain parenchyma that are now understood to play essential roles in brain development, homeostasis, inflammation, and neurodegeneration.8,9 The particular importance of microglia in promoting the health and resilience of CNS white matter has emerged in the 21st century due in large part to the identification of pathogenic mutations in microglia-expressed genes in Mendelian white-matter disorders.

In the first section, we leverage work in human and mouse genetics to describe the primary microglia-associated leukodystrophies, which are caused by pathogenic mutations in genes such as TREM2 (encoding the triggering receptor expressed on myeloid cells 2), TYROBP (TYRO protein tyrosine kinase-binding protein), CSF1R (colony-stimulating factor 1 receptor), and USP18 (ubiquitin-specific protease 18). Building on these findings, we transition our focus toward diseases in which microglia play an increasingly recognized role and explore recent advances in our understanding of white-matter microglia. Our overarching goal in exploring these disorders and their genetic causes is to synthesize a more robust understanding of the mechanisms by which microglia maintain CNS white-matter homeostasis, not only after acute white-matter insult but also over the entire lifespan and in disease. Finally, we highlight a new frontier in the study of leukodystrophies: a small group of genes associated with the expression and/or function of the secreted glycoprotein, progranulin. Members of this group of genes influence lysosomal function,10,11 shape microglial biology in important ways,1214 and are causally involved in several distinct forms of leukodystrophy15,16 as well as early-onset neurodegenerative disease resulting in a clinical syndrome of frontotemporal dementia (FTD).17,18 Intriguingly, the FTD cases associated with this group of genes (including GRN [encoding progranulin], TMEM106B [transmembrane protein 106B] and SORT1 [sortilin]) show evidence of white-matter changes that are otherwise atypical for FTD.1922

Nasu-Hakola disease, also known as polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy (PLOSL), was first associated with pathogenic mutations in TYROBP (encoding a protein often called DAP12 [DNAX-activating protein of 12 kDa]) approximately 20 years ago.23 Shortly after this discovery, additional Nasu-Hakola patients harboring pathogenic mutations in TREM2 were identified.24 Given that TREM2 is a microglial receptor that interacts with and signals via DAP12,25 the identification of loss-of-function mutations in the genes encoding both of these proteins which cause the same recessively inherited disorder provided some of the first strong evidence that aberrant microglia function could cause an adult-onset leukodystrophy.

Nasu-Hakola disease classically involves phenotypes beyond loss of myelin and cerebral axons, including formation of bone cysts and basal ganglia calcification;26,27 however, several cases of early-onset FTD-like syndromes involving white-matter loss but lacking overt bone phenotypes have also been associated with loss-of-function mutations in TREM2.2830 Consideration of these cases suggests that while loss of TREM2 function in osteoclasts can in some cases be compensated for, TREM2 function in microglia appears to be essential for the maintenance of white matter throughout the lifespan. In addition to these early-onset FTD-like syndromes associated with complete or near-complete loss of TREM2 function, rare heterozygous variants in TREM2 are also thought to increase risk for FTD31,32 (in addition to their well-established role in increasing risk for Alzheimer disease33,34), although it remains unclear if partial loss of TREM2 function increases risk for FTD via loss of white-matter integrity, reduced microglial clearance of pathological proteins more typically associated with FTD (eg, tau and TDP-43), or a combination of these or other mechanisms.

TREM2 binds a variety of lipidic ligands including anionic and zwitterionic phospholipids, bacterial lipopolysaccharide, and myelin-enriched lipids, such as sulfatide and sphingomyelin (reviewed in25,3537). In addition, TREM2 can interact with several protein ligands including apolipoproteins (eg, APOE) and amyloid-.25 Given TREM2s ability to sense myelin-derived lipids, and the known role of TREM2, TYROBP, and microglia in leukodystrophies, it is reasonable to hypothesize that proper microglial maintenance of white-matter homeostasis involves direct sensing of myelin-derived components and subsequent signal transduction via a functional TREM2-DAP12 complex. Indeed, several papers employing cuprizone-induced demyelination in mice lacking Trem2 support this possibility.38,39 More recent work suggests that loss of Trem2 specifically leads to pathological cholesteryl ester accumulation in microglia downstream of myelin debris phagocytosis in a chronic demyelination model.40 Encouragingly, activation of Trem2 in vivo with an agonistic antibody enhances myelin debris clearance after cuprizone treatment and promotes the repopulation of oligodendrocytes, subsequent remyelination, and partial protection against axonal damage.41 Collectively, mouse models of Trem2 deficiency suggest a role for microglial Trem2/Dap12 in maintaining white-matter health by (i) sensing myelin-derived lipids that result from myelin damage; (ii) generating signaling cascades that promote phagocytosis of debris; (iii) enabling homeostatic metabolism and clearance of myelin-derived cholesterol; and (iv) promoting recruitment of the oligodendrocyte precursor cells (OPCs) that are required for remyelination and, ultimately, preservation of axonal integrity.

Formerly considered to be two distinct clinical entities, hereditary diffuse leukoencephalopathy with axonal spheroids (HDLS) and pigmented orthochromatic leukodystrophy (POLD) have been unified into a single clinicopathologic entity adult-onset leukoencephalopathy with axonal spheroids and pigmented glia (ALSP) with the identification of CSF1R mutations in both disorders.4245 ALSP is a progressive and clinically heterogeneous disorder with antemortem diagnoses from early family studies including FTD, Alzheimer disease, and even multiple sclerosis.43 Histologically, the disorder is characterized by degeneration of white matter and axons as well as the presence of pigment-laden macrophages.45 Given that CSF1R is expressed on microglia within the brain and CSF1R signaling is essential for the development of microglia,46,47 ALSP due to CSF1R mutations can be considered to be a primary microglial leukodystrophy.1,48 ALSP caused by CSF1R mutations is inherited in an autosomal-dominant manner, with many of the described mutations abrogating autophosphorylation within the intracellular tyrosine kinase domain.43,44 The presence of heterozygous loss-of-function mutations in ALSP suggests that haploinsufficiency of CSF1R signaling is sufficient to cause severe adult-onset white-matter degeneration downstream of microglial dysfunction.48 Interestingly, recent work from our institution highlights hematopoietic stem cell transplantation (HSCT) as a potentially promising clinical therapy for ALSP, with both patients in the study demonstrating partial clinical stabilization and reduced white-matter abnormalities on brain MRI.49 The findings from this case study are consistent with the possibility that transplant-derived myeloid cells are capable populating the microglial niche and restoring CSF1R signaling.

The recent identification of homozygous CSF1R mutations in childhood-onset leukodystrophy involving agenesis of the corpus callosum50 not only underscores the importance of microglial CSF1R signaling in white-matter maintenance but further suggests a role for microglia in supporting the development of CNS white matter. Work from mouse models suggests that interleukin 34 (IL-34), rather than CSF-1, is the critical CSF1R ligand enabling the downstream signaling that is necessary for microglial development and/or maintenance.47,51 Recent work in zebrafish has suggested that brain-derived IL-34 drives the recruitment of embryonic macrophages (ie, microglia precursors) into the CNS,52 although prior work in mice has suggested that IL-34 may be particularly important for maintenance (rather than development) of microglia in the mammalian brain.51 Considering our current knowledge of IL-34CSF1R signaling, the future discovery of lL34 mutations in otherwise unexplained cases of leukodystrophy would not be unexpected.

After the discovery of CSF1R mutations as a cause of ALSP, additional cases remained that lacked such mutations. Some of these individuals were subsequently found to harbor compound heterozygous or homozygous loss-of-function mutations in AARS2, encoding mitochondrial alanyl-tRNA synthetase 2.5355 It is noteworthy that mutations in AARS2, encoding a protein with a function unrelated to that of CSF1R whose expression is ubiquitous rather than restricted to the myeloid lineage can result in an adult-onset leukodystrophy resembling ALSP (albeit with additional phenotypes, such as ovarian failure in women). Additional research is needed to determine how loss of a seemingly disparate biochemical function can promote such a clinically similar phenotype.

Pseudo-TORCH (toxoplasmosis, other infections, rubella, cytomegalovirus, and herpes simplex virus) syndrome due to loss-of-function mutations in USP18 represents an interferonopathy and microgliopathy resulting in white-matter damage in mice and humans.5658 Elucidation of the role of USP18 a multifunctional protein that possesses both isopeptidase activity and inhibitory activity toward type I interferon (IFN) signaling59 in microglia suggests that loss of a crucial inflammation-dampening mechanism is sufficient to produce CNS pathology. In particular, the de-repression of signaling resulting in the expression of IFN-stimulated genes in microglia appears likely to be a culprit in the microglia-mediated destruction of white matter.60

Integrating the literature on Nasu-Hakola disease and ALSP with USP18-mediated pseudo-TORCH syndrome suggests that microglia can cause destructive white-matter disease in at least two apparently opposing manners: (i) loss of beneficial signaling required to promote microglial survival, proliferation, and metabolism prevents microglia from appropriately responding to and clearing incipient white-matter damage (eg, via loss of TREM2-DAP12 or CSF1R-DAP12 signaling); and (ii) loss of negative regulation of the type I IFN pathway unleashes toxic inflammatory processes leading to white-matter pathology (eg, via loss of USP18 negative regulation). Additional mechanisms are likely to be uncovered in the coming years. Despite the fact that Usp18 expression is enriched in white-matter microglia,56 it is not fully clear why USP18-associated disease appears to selectively affect microglia in the white matter; future studies will be needed to address this issue.

Adrenoleukodystrophy occurs due to peroxisomal dysfunction that causes very long chain fatty acid (VLCFA) accumulation in all tissues due to an X-linked mutation in ABCD1 (encoding ATP-binding cassette D1, which transports VLCFA into peroxisomes).61 The clinical phenotype is highly variable, but usually includes early-onset adrenal insufficiency (median time to glucocorticoid replacement therapy ~16 years) and a variable neurological phenotype with cerebral and/or spinal cord demyelination (median time to cerebral disease ~35 years).62 The neurological phenotype increases in prevalence as a patient ages, with ~80% of patients surviving past age 64 having cerebral disease. Historical work has focused largely on VLCFA toxicity in oligodendroglia given their high lipid content,61 but the central role of microglia in cerebral and spinal demyelination is becoming increasingly apparent. For example, recent work in mouse models of adrenoleukodystrophy has found that microglial activation preceded synaptic loss and that Abcd1-deficient microglia demonstrated a pro-phagocytotic phenotype with upregulated Trem2 expression.63 Analysis of brain tissue samples from adrenoleukodystrophy patients by Bergner et al support this finding prelesional areas were remarkable for only minimal changes to oligodendroglial and neuronal morphology but with microglia showing signs of activation, including decreased TMEM119 expression and conversion to an amoeboid phenotype.64 This and prior studies also demonstrate microglial depletion in prelesional areas compared to healthy white matter and demyelinated regions, suggesting that activated microglia may undergo apoptosis just prior to demyelination.64,65 Of note, a similar pattern of microglial depletion prior to demyelination has also been observed in metachromatic leukodystrophy, a disorder caused by mutations in ARSA encoding the lysosomal enzyme arylsulfatase A that breaks down sulfatides and, less frequently, in PSAP which encodes prosaposin and will be discussed in detail below in the context of progranulin function.16,64

Treatment of adrenoleukodystrophy is distinctive amongst leukodystrophies and further highlights the importance of immune cells in the pathophysiology of neurodegeneration secondary to ABCD1 mutations. If given early, bone marrow transplantation has been shown to slow or halt the progression of adrenoleukodystrophy.66 More recently, the therapy has been refined further and autologous transplants of CD34+ cells with a functioning copy of ABCD1 now show promise in clinical trials67 with similar results to a conventional bone marrow transplant but notably without signs of graft-versus-host disease or other transplant-related complications. This development is of clinical and scientific significance because it suggests that the disease-modifying aspects of CD34+ transplants may be due to the impact of properly functioning macrophages (which can migrate into the brain and potentially fill the microglial niche) rather than the immunosuppressive medications required after conventional HSCT.

Krabbe disease, also known as globoid cell leukodystrophy, occurs in patients with deficiency of the lysosomal enzyme galactocerebrosidase (encoded by GALC).68,69 Patients with Krabbe disease accumulate both galactosylceramide and galactosylsphingosine (also known as psychosine), leading to widespread demyelination with reactive gliosis remarkable for both multinucleated microglia (globoid cells) and astrocytosis.70,71 Interestingly, in vitro work has shown that psychosine alone is sufficient to produce a globoid cell-like phenotype,72 suggesting that globoid-cell formation may occur independently of oligodendroglial death rather than as a reaction to it. Adding to the intrigue of this finding is evidence from new mouse models of Krabbe disease that demonstrate early gliosis, globoid cell formation, and elevated psychosine levels prior to cell death and in the absence of substantial demyelination.73 While psychosine is a known oligodendroglial toxin,74 the possibility that aberrant microglial function could contribute to white-matter disease is supported by data from fetal human tissue with elevated psychosine, confirming the presence globoid cells without concurrent demyelinating disease.75

The potential import of this finding is heightened by the fact that immunomodulation in the form of HSCT is the most effective disease-modifying therapy for Krabbe disease.76,77 As in adrenoleukodystrophy, HSCT is more effective when given prior to the onset of clinical symptoms and sometimes associated with reduced white-matter disease on T2-weighted imaging.77,78 Although the precise therapeutic mechanisms responsible for the relative success of HSCT in Krabbe disease remain unknown, these findings on balance suggest that the microglial contributions to Krabbe disease pathophysiology including demyelination in particular may be underappreciated and that future research will be required to determine the specific mechanisms by which microglia modulate and possibly even drive aspects of demyelinating pathology.

How do microglia promote white-matter homeostasis in health and disease? A variety of novel mouse models have refined our knowledge of microglia residing in the white matter and suggest additional relevant mechanisms. For example, microglial transglutaminase-2 activity supports the survival of OPCs and promotes both developmental myelination and remyelination.79 This finding bolsters the notion that microglial support of white-matter physiology is not merely a function of sensing and clearing nascent white-matter damage, but rather involves active trophic support of oligodendroglial cells. Studies of remyelination using the optic nerve crush model indicate that microglial activation soon after injury is crucial for robust OPC proliferation but ultimately inhibits the differentiation of these precursor cells into mature, myelination-competent oligodendrocytes.80 Accordingly, depletion of microglia using a small-molecule CSF1R inhibitor several weeks after injury (but not earlier) enabled differentiation of recently generated OPCs, and in conjunction with inhibition of the oligodendrocyte G protein-coupled receptor (GPR) 17, enabled remyelination of the injured optic nerve.80

In contrast to the supportive role that microglia can play in myelination, several recent papers indicate that disrupted transforming growth factor (TGF)- signaling in microglia as well as peripheral monocytes capable of colonizing the CNS as tissue-resident macrophages under defined conditions can result in potent white-matter destruction.81,82 Among other effects, loss of microglial TGF- signaling results in impaired OPC differentiation into mature, myelin-producing oligodendrocytes.83 On balance, this body of literature highlights that, while microglia can in specific contexts provide essential support to oligodendroglial cells, they also possess a latent, tightly regulated potential to engage in highly pathogenic behavior in the white matter.

In addition to the above hypothesis-driven studies, large-scale, single-cell RNA sequencing studies have revealed a transient subpopulation of microglia localizing to early postnatal white matter84 and a population of microglia associated with aging white matter.85 Given that the early postnatal microglial subpopulation is observed in the developing corpus callosum and that children with homozygous, loss-of-function CSF1R mutations show agenesis of the corpus callosum (described above50), it is reasonable to speculate that specialized, developing white-matter microglia may be conserved in humans and involved in the proper development of CNS white matter.

Haploinsufficiency of the secreted glycoprotein progranulin, encoded by GRN, was first linked to familial frontotemporal lobar degeneration (FTLD) characterized by pathologic TAR DNA-binding protein (TDP)-43 inclusions in 2006.17,18 Other common causes of familial FTLD include pathogenic hexanucleotide repeat expansion intronic to C9orf72 (chromosome 9 open reading frame 72) and pathogenic mutations in MAPT (microtubule-associated protein tau).86 Of note, FTLD cases attributable to GRN, C9orf72, and MAPT demonstrate gene-specific white-matter changes measured using diffusion tensor imaging (DTI).87,88 However, pathogenic GRN mutations are further differentiated among these common causes of familial FTLD in that a subset of cases (1320%) demonstrate substantial white-matter hyperintensities (WMH) beyond the DTI and gray-matter changes seen across the spectrum of neurodegenerative phenotypes with TDP-43 and tau neuropathology (Table 1).19,20,89 This findings relevance to leukodystrophies is further heightened by the absence of other potential explanations for the substantial WMH observed in FTLD-GRN patients, such as vascular disease or major vascular risk factors, mitochondrial or metabolic disease, or other neuroinflammatory conditions.19,90 A recent case report provided additional insight into this discovery, demonstrating that the WMH seen on MRI are associated with marked microgliosis but only mild axonal loss and minimal vascular disease.91 Taken together, these observations suggest that the white-matter findings reported for FTLD-GRN patients are likely specific to the microglial dysfunction caused by GRN mutations rather than other, more established, causes of WMH.

Table 1 Progranulin (GRN)-Related Genes Associated Directly or Indirectly with Frontotemporal Dementia (FTD) and Inherited White-Matter Disorders

At the subcellular level, progranulin appears to be particularly important for maintaining lysosomal homeostasis.10 Progranulin which is synthesized as a precursor protein that can be proteolyzed into peptides termed granulins is sorted to the lysosome by virtue of its interaction with sortilin and another secreted glycoprotein, prosaposin (see below), although it remains unclear precisely which aspects of lysosomal function progranulin regulates once delivered to the lysosome.10 One intriguing model suggests that partial or complete loss of progranulin results in reduced delivery of prosaposin to the neuronal lysosome, which in turn would lead to impaired glycosphingolipid metabolism.92

At the cellular level, loss of progranulin affects microglial biology in numerous ways. For example, loss of Grn in mice results in pathologic activation of microglia during aging in a process that involves inappropriate complement production.12,14 In addition, microglia-specific deletion of Grn results in specific behavioral alterations downstream of aberrant microglial activation of nuclear factor (NF)-B and tumor necrosis factor (TNF)-.13 Interestingly, despite the fact that loss-of-function mutations in both GRN and TREM2 are associated with neurodegeneration and white-matter pathology and that both genes regulate microglial physiology a direct comparison of the transcriptomes of microglia lacking either Grn or Trem2 revealed highly divergent microglial transcriptional profiles.93 In particular, loss of Trem2 results in increased expression of so-called homeostatic microglial genes and decreased expression of disease-associated genes, whereas the opposite profile is observed in Grn-null microglia.93

A careful consideration of the role of GRN and TREM2 in shaping microglial biology therefore further supports the notion that neurodegeneration and white-matter damage downstream of pathogenic mutations in microglia-expressed genes are unlikely to result from a single, monolithic shift in microglial physiology. Rather, the data here once again suggest a more likely scenario in which both the inability of microglia to respond appropriately to incipient cellular damage as well as chronic hyperactivation of microglia can similarly result in downstream white-matter damage and neuropathology.

TMEM106B, encoding a transmembrane protein that localizes primarily to lysosomes, represents an important genetic modifier of FTLD risk due to pathogenic GRN mutations,9496 and the protective allele of TMEM106B is associated with increased plasma levels of progranulin.94,95 Carriers of pathogenic GRN mutations frequently show evidence of white-matter loss before symptom onset,97 and the risk allele of TMEM106B is associated with exacerbated disease-associated functional connectivity changes in presymptomatic GRN carriers compared to healthy controls.21 These findings suggest that the modulation of FTLD risk by TMEM106B may be mediated not only via effects on circulating progranulin levels but also by modulating the severity of the white-matter phenotype observed in these individuals. Further, given what we know about the role of progranulin, these seemingly disparate effects may in fact be directly related to one another (Table 1).

A series of recently published papers have independently converged on the finding that loss of Tmem106b exacerbates a variety of neurodegeneration-associated phenotypes in mice also lacking Grn.98101 Moreover, mice lacking both Tmem106b and Grn displayed exacerbated lysosomal dysfunction as well as signs of myelin damage. Indeed, loss of Tmem106b on a wild-type Grn background is sufficient to produce oligodendroglial and myelination defects, possibly downstream of lysosomal dysfunction.102,103 The white-matter abnormalities described in Tmem106b-deficient mice are not surprising given that pathogenic TMEM106B mutations have been identified as a cause of hypomyelinating leukodystrophy.104 In particular, a recurrent, dominant, and in some cases de novo mutation in TMEM106B has been found to cause a relatively mild form of hypomyelinating leukodystrophy.15,105

Given (i) the clear role of GRN in maintaining lysosomal and microglial homeostasis; (ii) the established genetic interaction between GRN and TMEM106B; (iii) evidence of white-matter abnormalities in individuals with FTLD due to pathogenic GRN mutations; and (iv) the importance of TMEM106B in lysosome function and myelination, it is apparent that the GRN-TMEM106B axis regulates white-matter integrity at least in part by promoting lysosomal and microglial homeostasis. In light of the above considerations, it is reasonable to speculate that heightened white-matter resilience in individuals harboring the protective allele of TMEM106B may represent a plausible mechanism for the modulation of FTLD risk due to pathogenic GRN mutations. Interestingly, given that reductions in white-matter integrity have also been observed in C9orf72 pathogenic repeat expansion carriers,90,106 that C9orf72 protein also affects lysosomal function,107 and that TMEM106B also modulates FTLD risk due to C9orf72 expansion,108,109 it is possible that white-matter resilience plays a role in the modulation of FTLD risk even beyond that contributed by GRN.

Early evidence from the Genetic FTD Initiative (GENFI) study suggests that, among individuals harboring pathogenic GRN mutations, those carrying the risk-conferring variant in TMEM106B accrue white-matter changes more rapidly.20 Beyond these changes, grey-matter volume analyses in autosomal dominant FTD (a combined cohort that included GRN, C9orf72, and MAPT mutation carriers from GENFI) found that TMEM106B genotype modulated the association between education and grey-matter volumes.110 Whether these grey-matter changes were preceded by or occurred in parallel with white-matter disturbances was not investigated but remains an exciting avenue for future research. Overall, these findings provide early evidence suggesting that multiple pathogenic hits to lysosomal and microglial homeostasis may confer susceptibility to and/or accelerate white-matter disease.20

PSAP, encoding prosaposin, is genetically linked to several hereditary sphingolipidoses including metachromatic leukodystrophy,16 atypical forms of Krabbe disease111 and Gaucher disease,112 and combined prosaposin deficiency.113 Somewhat analogously to progranulin, prosaposin is synthesized as a precursor protein that, upon proteolysis, is converted into smaller proteins termed sphingolipid activator proteins or saposins.114 Pathogenic mutations in PSAP, generally found as homozygous or compound heterozygous variants, result in the loss of specific saposins and in some cases the entire precursor protein. As mentioned above, prosaposin is involved in the sorting of progranulin to the lysosome,115 and the loss of progranulin in turn impairs lysosomal delivery of prosaposin.92 The impaired sorting and processing of prosaposin in GRN-mutant cells appears to result in reduced glucocerebrosidase activity,116,117 providing an interesting link to Gaucher disease and another potential mechanism that may contribute to disease risk in progranulin-haploinsufficient cells. Variation in the PSAP locus is also associated with circulating progranulin levels, which indicates an important genetic interaction in addition to the known biochemical interaction.118 Taken together, these functional connections between prosaposin and progranulin coupled with the clear genetic link between PSAP and leukodystrophy further reinforce the notion that progranulin-associated proteins are crucial for white-matter integrity (Table 1). Moreover, given what is known about GRN and TMEM106B, it would not be surprising if variation in the PSAP locus is ultimately found to be associated with FTD risk as well.

In addition to prosaposin, the transmembrane protein sortilin is also involved in the delivery of progranulin to the lysosome.119 Quite interestingly, rare variation in SORT1, encoding sortilin, is now also implicated in risk for FTD.22 Moreover, a subset of the patients harboring rare, nonsynonymous variants in SORT1 show substantial WMH by neuroimaging,22 similar to what is frequently observed in FTLD due to pathogenic GRN mutations. Collectively, a consideration of the genetic and functional interactions between GRN, TMEM106B, PSAP, and SORT1; the known role of progranulin in promoting microglial homeostasis; and the association of this group of genes with various inherited white-matter disorders as well as forms of FTD often involving otherwise atypical white-matter findings suggests that these progranulin-associated genes shape microglial biology and bolster white-matter health during aging. By the same token, these genes illuminate underappreciated connections between white-matter resilience and risk for FTD (Table 1).

In this review, we aimed to synthesize knowledge about and uncover connections between the primary microglial leukodystrophies including Nasu-Hakola disease, ALSP, and pseudo-TORCH syndrome due to pathogenic USP18 mutations and inherited white-matter disorders such as adrenoleukodystrophy and Krabbe disease, in which microglia play an increasingly recognized role. In addition, we considered the literature surrounding progranulin and its functionally associated genes to draw connections between their roles in distinct leukodystrophies as well as forms of FTD involving otherwise atypical white-matter findings. The impact of progranulin on microglial and lysosomal physiology suggests that these cells and organelles are crucial for the facilitation of white-matter homeostasis. The loss of progranulin function, and that of progranulin-related proteins, highlights their role not only in traditionally recognized white-matter disorders but also in a seemingly unrelated disease FTD that nevertheless sometimes involves white-matter pathology in the absence of vascular risk factors.

Providing a rational basis for linking particular microglial phenotypes associated with pathogenic mutations to specific white-matter diseases and their typical ages of onset remains challenging. Nevertheless, we have summarized the current state of knowledge regarding the disorders discussed herein and the primary microglial phenotypes with which they are thought to be associated (Figure 1). Pseudo-TORCH syndrome due to USP18 mutations, representing a type I interferonopathy, leads to very early pathology, with signs of disease at or before birth.57 On the other hand, congenital absence of microglia observed in an individual harboring a homozygous splice-site mutation in CSF1R has also been associated with prenatal symptoms; an additional patient with a homozygous missense mutation in CSF1R showed symptom onset at age 12.50 Histological studies of adrenoleukodystrophy, which has a wide age range of symptom onset, suggest that microglial activation, acquisition of an amoeboid phenotype, and loss of microglia may all be relevant cellular phenotypes.6365 Moving to the adult-onset, inherited white-matter disorders, evidence from mouse models suggests that Nasu-Hakola disease (due to loss of TREM2 or TYROBP) may be associated with heightened microglial susceptibility to apoptosis120 and impaired microglial lipid metabolism.40 Similarly, ALSP due to partial loss of CSF1R may be associated with a reduction in microglia density,121 a shift toward an inflammatory microglial state,122 or both. Finally, FTLD due to GRN haploinsufficiency, which often presents with white-matter pathology, may be associated with excessive complement production by microglia.12,14

Figure 1 Distinct pathogenic mutations and microglial phenotypes are associated with white-matter disorders with highly variable ages of neurological symptom onset. White-matter diseases and the major microglial phenotypes they may be associated with are ordered according to their typical, approximate age range of onset. The characteristic microglial phenotypes listed are from histopathological studies and/or relevant mouse models of disease; see main text for references. Ages of neurological symptom onset can range from prenatal for type I interferonopathy associated with USP18 deficiency and congenital absence (or near-absence) of microglia due to homozygous mutations in CSF1R, up to the 50s70s for some cases of frontotemporal lobar degeneration with white-matter hyperintensities associated with pathogenic GRN mutations. Created with BioRender.com.

Abbreviations: ABCD1, ATP-binding cassette D1; ALSP, adult-onset leukoencephalopathy with axonal spheroids and pigmented glia; CSF1R, colony-stimulating factor 1 receptor; FTLD, frontotemporal lobar degeneration; GRN, progranulin; HDLS, hereditary diffuse leukoencephalopathy with axonal spheroids; POLD, pigmented orthochromatic leukodystrophy; TMEM106B, transmembrane protein 106B; TORCH, toxoplasmosis, other infections, rubella, cytomegalovirus, and herpes simplex virus; TREM2, triggering receptor expressed on myeloid cells 2; TYROBP, TYRO protein tyrosine kinase-binding protein; USP18, ubiquitin-specific protease 18.

Future studies of the primary microglial leukodystrophies should focus on determining precisely how alterations in seemingly disparate molecular pathways within microglia, such as those caused by pathogenic mutations in TREM2 and USP18, ultimately converge on the destruction of white matter. Further work in adrenoleukodystrophy and Krabbe disease will be needed to determine whether the therapeutic benefit observed for HSCT is derived from the engraftment of myeloid cells within an otherwise defective microglial niche, as is currently suspected. Evidence from mouse models suggests that under certain circumstances (such as acute ablation of microglia) peripheral myeloid cells are capable of efficiently migrating into the brain, where they acquire a similar but not identical phenotype to that of genuine microglia.123 Thus, it remains to be seen whether the benefits of HSCT in adrenoleukodystrophy and Krabbe disease are due to the restoration of ABCD1 and GALC function, respectively, within brain-engrafted microglia-like cells derived from the transplant. Mouse models should enable this issue to be addressed in the future.

Finally, what are we to make of the WMH observed in a subset of patients with FTLD due to GRN mutations or FTD associated with rare variation in SORT1? Should this subset of patients be considered to have an adult-onset leukodystrophy? The extent of white-matter involvement in some cases seems to support this interpretation, although in these cases the white-matter pathology co-occurs with a prominent gray-matter structural phenotype and, presumably, TDP-43 neuropathology. Relatedly, it may be useful to consider the possibility that subtypes of FTLD-GRN exist, including those with and without extensive white-matter damage. Perhaps the involvement of white-matter pathology requires a second hit, such as inheritance of the risk-conferring allele of TMEM106B or concomitant reduction in the function of prosaposin or sortilin. Future discoveries in the genetics of FTD will determine whether there are additional, as-yet undiscovered connections between leukodystrophy and FTD, but the identification of variants in USP18 or PSAP, for example, that confer risk for FTD, would provide support for this intriguing possibility.

J.S.Y. reports this study was supported by NIH-NIA R01 AG062588, R01 AG057234, and the Rainwater Charitable Foundation. The authors report no other conflicts of interest in this work.

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Scientists investigating the pandemic still can't pinpoint the exact origin of the coronavirus that caused it. The WHO is poised to report on its search but some are skeptical about their conclusions.

Joseph B. McCormick and Susan P. Fisher-Hoch, professors of Epidemiology, Human Genetics & Environmental Sciences at the University of Texas Health Science Center at Houston. Authors ofLevel 4: Virus Hunters of the CDC - Tracking Ebola and the World's Deadliest Viruses."Jamie Metzl, senior fellow at the Atlantic Council. Former NSC official during Clinton administration and adviser to the WHO on human genome editing. (@JamieMetzl)

Alison Young, investigative reporter. Professor of Public Affairs Reporting and director of the Missouri School of Journalisms Washington Program. (@alisonannyoung)

AP: "WHO report says animals likely source of COVID" "A joint WHO-China study on the origins of COVID-19 says that transmission of the virus from bats to humans through another animal is the most likely scenario and that a lab leak is extremely unlikely, according to a draft copy obtained by The Associated Press."

MIT Technology Review: "No one can find the animal that gave people Covid-19" "More than a year after covid-19 began, no food animal has been identified as a reservoir for the pandemic virus. Thats despite efforts by China to test tens of thousands of animals, including pigs, goats, and geese, according to Liang Wannian, who leads the Chinese side of the research team. No one has found a direct progenitor of the virus, he says, and therefore the pandemic 'remains an unsolved mystery.'"

The Wall Street Journal: "How the WHOs Hunt for Covids Origins Stumbled in China" "China resisted international pressure for an investigation it saw as an attempt to assign blame, delayed the probe for months, secured veto rights over participants and insisted its scope encompass other countries as well, the Journal found."

USA Today Opinion: "Could an accident have caused COVID-19? Why the Wuhan lab-leak theory shouldn't be dismissed" "As members of a World Health Organization expert team have made international headlines recently dismissing as 'extremely unlikely' the possibility that a laboratory accident in Wuhan, China, could have sparked the COVID-19 pandemic, I cant stop thinking of the hundreds of lab accidents that are secretly occurring just in the United States."

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Solving The Mystery Of The Pandemic's Origin Story - WBUR

Research led by Imperial College London has revealed three genesPAX8, CLPTM1L and HLA-DQA1containing variants that increase a womans risk for cervical cancer.

The genome-wide association study, one of the first of its kind for cervical cancer or precancer, was carried out in samples from more than 150,000 women of European descent from the UK Biobank cohort and validated in a second Finnish cohort.

Cervical cancer impacts approximately 570,000 women around the world, with more than 13,000 cases diagnosed in the U.S. each year. It remains one of the most common female cancers despite extensive screening and vaccination against the human papilloma virus (HPV), which is known to be the main cause of cervical cancer.

HPV causes cervical cancer, but what we havent understood until now is why many people are infected with HPV, yet very few develop cervical cancer, said Sarah Bowden, M.D., a researcher from the Department of Surgery and Cancer at Imperial College London and lead author on the paper describing the study published in The Lancet Oncology.

Over 70% of people are infected with HPV over their lifetime, yet most women clear the infection, and only a small fraction go on to develop abnormal pre-cancerous cervical cells; even fewer develop cervical cancer.

There has long been some uncertainty about the degree to which genetic variants can impact a womans risk for developing cervical cancer. Previous studies suggest that the genetic contribution to the risk of cervical cancer ranges from 27-36%, but only seven earlier studies have looked at genetic variants that could contribute to this risk and these have all been fairly modest in size.

This study included 4,769 women with invasive cervical cancer or precancerous neoplasms and 145,545 controls. The women were aged 40-69 years and of European origin.

Out of 9,600,464 SNPs included in the GWAS, six variants were linked with increased risk for cervical cancer or precancerous lesions that could lead to cervical cancer. In a Finnish replication cohort of 128,123 individuals, FinnGen, three of these associations were successfully replicated.

The three significant associations were found with SNPs in the PAX8, CLPTM1L and HLA-DQA1 genes. While gene variants in the HLA region have previously been linked with cervical cancer, the association with the PAX8 and CLPTM1L genes was new.

HLA genes are strongly linked to immune system function, whereas the PAX8 protein triggers hormones important for growth regulation, brain development and metabolism and is expressed in the endometrium and ovaries. CLPTM1L is often overexpressed in lung tumors and the gene lies within a cancer susceptibility region. Inhibition of this protein can help stop tumor formation in some cancers.

The research team also looked at other factors that could predispose women to cervical cancer and confirmed previous links with smoking, age at pregnancy and number of sexual partners.

While more work is needed to investigate the newly discovered genetic links, this study is a step in the right direction to understanding more about cervical cancer and how it could be treated.

Once genetic testing becomes more widespread, looking at a patients genetic information alongside cervical screening could help identify individuals who need close monitoring or treatment, said Bowden.

Increased genetic information could also lead to new drugs in the future. At the moment, if a woman is found to have a pre-cancerous cervical abnormality, the options are to watch and wait, which means regularly check-ups, or a treatment to surgically remove part of the cervix. This can increase the risk of a late miscarriage or preterm birth in future pregnancies. But if we knew more about the interaction between genetics and HPV, we might be able to develop new drugs to treat these abnormalities at an early stage.

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Variants in Three Genes Linked with Increased Cervical Cancer Risk - Clinical OMICs News

Professor Sir Peter Harper, who has died aged 81, was one of the worlds most respected clinical geneticists.

As Professor of Medical Genetics at Cardiff University he focused on muscular dystrophies and Huntingtons disease, and Cardiff soon became an internationally renowned centre for both.

Harpers research showed that both of the conditions he focused on, myotonic dystrophy and Huntingtons disease, resulted from expansion of unstable repetitive DNA sequences explaining how they tend to get worse as the condition passes down the generations a phenomenon that is termed genetic anticipation.

In 1987, following years of planning, his vision for an integrated academic and NHS centre for medical genetics was realised with the opening of the Institute of Medical Genetics.

The relatively modest building eventually housed outpatient clinics, clinicians and counsellors, NHS and university molecular genetics teams, cytogeneticists, a newborn biochemical screening lab, foetal pathology, experts in computer programming and mathematical genetics, social scientists, psychiatrists and psychologists.

This professional diversity created a unique atmosphere in which many different perspectives were brought to bear on inherited conditions. The genes for myotonic dystrophy (characterised by progressive muscle wasting) and Huntingtons disease (a progressive brain disorder) were identified and, remarkably, each were shown to result from different unstable expansions affecting repetitive DNA sequences.

Evidence-based approaches to predictive genetic testing were developed and contentious areas such as genetics and insurance and genetic testing in children were explored.

Throughout these endeavours the views of patients and their families were given priority and organisations including the Myotonic Dystrophy Support Group and the Huntingtons Disease Association were involved as equal partners. Harpers guide, Practical Genetic Counselling was translated into many languages and has run to eight editions.

Peter Stanley Harper was born on April 28 1939 and brought up in Barnstaple, Devon. His father Richard was a GP; his mother, Margery (ne Elkington) was a talented French scholar who sacrificed a promising academic career to follow her husbands work.

From Blundells School, Tiverton, Peter won a scholarship to read Medicine at Exeter College, Oxford, where he also attended zoology lectures in genetics and biology.

Determined to combine genetics and medicine in his future career, in 1967 he moved to Liverpool to work with Cyril (later Sir Cyril) Clarke, who had just established a new unit for medical genetics.

There, Harper worked on inherited oesophageal cancer while also investigating insect genetics at the university zoology department. In 1968 he married Elaine and they moved to Johns Hopkins University, Baltimore, in 1969. There he completed a doctorate on myotonic dystrophy, a condition that became a clinical and research focus throughout his professional life.

Returning to Britain in 1971, Harper gained a clinical academic post in the Department of Medicine in Cardiff, where he remained until his retirement.

Before retiring, Harper started a project to record the history of medical genetics. This turned into a major undertaking, occupying him until the end of his life and involving much international travel.

The endeavour also included careful documentation of historical and contemporary abuses of genetics in Europe, America, Russia and China. Much of the material he accumulated can be read in his books, including A Short History of Medical Genetics (2008) and Evolution of Medical Genetics A British Perspective (2020) and accessed online at http://www.genmedhist.org.

Harper was active nationally and internationally, through roles with the Clinical Genetics Society and the Royal College of Physicians, the European Society of Human Genetics, the American College of Medical Genetics (which awarded him its lifetime achievement award in 1994) and the American Society of Human Genetics. He was chief editor of the Journal of Medical Genetics (1986-96), and a member of the Human Genetics Commission and the Nuffield Council for Bioethics.

He was appointed CBE in 1994 and knighted in 2004, although he never used the title. He particularly enjoyed sharing his passion and knowledge of nature with his family; he is survived by his wife Elaine, and by three daughters and two sons.

Sir Peter Harper, born April 28 1939, died January 23 2021

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Professor Sir Peter Harper, clinical geneticist who shed light on inherited diseases obituary - Telegraph.co.uk

Countries such as the US, Canada and the UK are seen as bastions of higher education. If youre willing to look past these popular study abroad destinations, Sweden is also home to innovative universities that offer students a world-class education.

The countrys government invests heavily in education, paving the way for the rise of research-intensive universities for aspiring researchers. There are part-time work opportunities for international students to support themselves as they work towards completing their degree, while the country also offers a high standard of living, further bolstering its appeal as a study abroad destination.

One such university that offers all this and more is rebro University, which offers a wide range of masters programmes to bolster your personal and professional development. Its research spans no less than 36 different subjects across the humanities and social sciences, medicine and health, and science and technology fields.

Attesting to the universitys prowess are its rankings. rebro University is ranked in the top 80 of the Times Higher Education (THE) Young University Rankings 2020 and in the top 400 THE World University Rankings 2021.

The universitys convenient location is also a major allure. rebro is a bustling city home to panoramic woodlands and pristine nature while still being close to the town centre for all your modern needs. Despite rebros modern appearance, the city is also home to popular attractions such as the rebro Castle, an ancient castle made of weathered grey stones.

Learning here will also be culturally immersive high standards of living aside, the university is located just two hours outside of Stockholm, a city known for its Michelin restaurants, picturesque hiking trails and public art.

rebro University is known for its world-class education and research expertise.

Source: rebro University

rebro University offers masters programmes across a wide range of subjects to cater to varied interests, from economics to mathematics and science to the latest in AI and robotics.

With sustainability high on the global agenda, rebro Universitys MSc Programme in Chemistry in Environmental Forensics will be ideal for those aspiring to solve some of the worlds global challenges. The course offers a broad syllabus, with a focus on chemical safety, health and the environment. It also provides insight into several related research areas, including bioanalytical and environmental analysis, looking at the source and amount of environmental chemical contaminants and their history.

Meanwhile, LinkedIns 2020 Emerging Jobs Report notes that the demand for AI experts has grown 74% annually over the past five years. If youre interested to pursue an exciting career in the industry, the universitys MSc Programme in AI and Robotics will teach you the methods used to power the latest generation of autonomous vehicles, how navigation software in your phone finds the fastest routes in real-time, and how sensors in robots and intelligent systems are used to perceive the world.

During your thesis project, youll have the opportunity to interact with future employers. Many of their graduates have gone on to further positions within academia and leading companies in the field, including Volvo and Epiroc.

Those interested in experimental medicine might want to enrol in the MSc Programme in Experimental Medicine, which offers broad and specialised knowledge in the field. The main focus of the programme looks at inflammatory mechanisms and its implications on public health, as many of the common diseases worldwide share an inflammation process as a common denominator. You will gain knowledge and skills in modern experimental medical and laboratory science, as well as in-depth knowledge of cell biology, immunology, human genetics and bioinformatics, and translational medicine.

For students who have a passion for music and its effect on individuals and society, rebro Universitys Masters Programme in Musicology Music and Human Beings would be the ideal step for those who already have a bachelors degree in the humanities, social sciences, musicology, or a related field. The programme prepares students for a career in doctoral research on music in academia, but it can also help students across a wide variety of music-related professions.

Make friends that will last a lifetime at this university.Source: Orebro University

High-quality masters programmes aside, there are many other appeals of studying at this university.

rebro University guarantees its masters students affordable accommodation where they have their own studio flat equipped with a kitchen and bathroom for just 350 euros a month. Students with citizenship in a European Union (EU) or European Economic Area (EEA) country, or Switzerland, are exempted from paying an application fee or tuition fees for any of their courses.

Coupled with its accredited faculties, leading research centres, and opportunities for close contact with professors, becoming a postgraduate student at rebro University is sure to be a memorable one. To find out more about the universitys programmes, click here.

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Level-up your career with a master's from rebro University - Study International News