Category Archives: Genome

Riss Human DNA Seq SNP 1 0 0
DNA resequencing with the intent to identify single nucleotide polymorphisms in individual samples is emerging as a frequent core task to identify genotypic differences in a population that may contribute to important phenotypic effects. The computational field has converged on a standardized best practices suite of tools for analyzing this type of data centered around the Genome Analysis Toolkit (GATK). In this hands-on tutorial, participants will perform analyses from start to finish with the goal of identifying SNP variants using data from de-identified human DNA samples. This will include (1) sample QA/QC, (2) mapping via BWA, post-processing of alignment files to remove PCR duplicates, re-calibrate basecalls and cleanup regions near indels, (3) genotype calling, (4) SNP annotation, and (5) SNP filtering and quality re-calibration. The first half hour of the first session will cover the basics of the Galaxy interface, so those already familiar with Galaxy can safely arrive one half-hour late for the first session.From:UofMMSIViews:0 0ratingsTime:02:00:53More inScience Technology

Follow this link:
Riss Human DNA Seq SNP 1 0 0 - Video

TCGA Benchmark 4: Evaluating SV and SNV Calls Using Cell Line Genomes - Adam Ewing
November 27-28, 2012 - The Cancer Genome Atlas #39; 2nd Annual Scientific Symposium: Enabling Cancer Research Through TCGA More: http://www.genome.govFrom:GenomeTVViews:16 0ratingsTime:11:59More inScience Technology

Continued here:
TCGA Benchmark 4: Evaluating SV and SNV Calls Using Cell Line Genomes - Adam Ewing - Video

Predicting Time to Ovarian Carcinoma Recurrence Using Protein Markers - Ji-Yeon Yang
November 27-28, 2012 - The Cancer Genome Atlas #39; 2nd Annual Scientific Symposium: Enabling Cancer Research Through TCGA More: http://www.genome.govFrom:GenomeTVViews:8 0ratingsTime:15:12More inScience Technology

Read more:
Predicting Time to Ovarian Carcinoma Recurrence Using Protein Markers - Ji-Yeon Yang - Video

Comprehensive Genomic Characterization of Squamous Cell Carcinoma of the Head and Neck - David Hayes
November 27-28, 2012 - The Cancer Genome Atlas #39; 2nd Annual Scientific Symposium: Enabling Cancer Research Through TCGA More: http://www.genome.govFrom:GenomeTVViews:14 0ratingsTime:26:06More inScience Technology

Excerpt from:
Comprehensive Genomic Characterization of Squamous Cell Carcinoma of the Head and Neck - David Hayes - Video

Analysis of 3000 Cancer Exomes to Identify Novel Cancer Drivers ... - Nickolay Khazanov
November 27-28, 2012 - The Cancer Genome Atlas #39; 2nd Annual Scientific Symposium: Enabling Cancer Research Through TCGA More: http://www.genome.govFrom:GenomeTVViews:10 0ratingsTime:16:02More inScience Technology

See original here:
Analysis of 3000 Cancer Exomes to Identify Novel Cancer Drivers ... - Nickolay Khazanov - Video

The Bladder Cancer Analysis Working Group (BLCA AWG): A Progress Report - John Weinstein
November 27-28, 2012 - The Cancer Genome Atlas #39; 2nd Annual Scientific Symposium: Enabling Cancer Research Through TCGA More: http://www.genome.govFrom:GenomeTVViews:18 0ratingsTime:22:58More inScience Technology

Continued here:
The Bladder Cancer Analysis Working Group (BLCA AWG): A Progress Report - John Weinstein - Video

The Somatic Genomic Landscape of Glioblastoma Multiforme - Roel Verhaak
November 27-28, 2012 - The Cancer Genome Atlas #39; 2nd Annual Scientific Symposium: Enabling Cancer Research Through TCGA More: http://www.genome.govFrom:GenomeTVViews:18 0ratingsTime:13:35More inScience Technology

Go here to read the rest:
The Somatic Genomic Landscape of Glioblastoma Multiforme - Roel Verhaak - Video

JD Ross Leahy Discusses The Rosetta Project
JD Ross Leahy omawia Rosetta projekt JD Ross Leahy Erlutert die Rosetta Projekt JD Ross Leahy Discute la Rosetta proyecto JD Ross Leahy discute o Rosetta projeto JD Ross Leahy discute la Rosetta projet JD Ross Leahy Discusses The Rosetta Project Michael Schnuerle Peter Deitz John Hoffman NetSquared JD Ross Leahy Laura Welcher Santa Clara Billboard provides music charts top songs artist photo galleries. Discover new music free videos and photos from your favorite artists and bands. Volodymyr Ant a travaill #233; au sein de Coalition for Independent Authors a #233;tudi #233; #224; Lviv Polytechnic National University Department of Architecture habite #224; ... Mediate.com offers the world #39;s leading directory of mediators plus over 13 000 articles news items and videos. Mediate.com is Everything Mediation! mauricio ticas mauricio torres mauricio vargas mauricio vasconcelos mauricio zuniga maurizio cappitta maurizio ciambella maurizio notte mauro balboa mauro de avila Greg Hall est sur Facebook. Inscrivez-vous sur Facebook pour communiquer avec Greg Hall et d autres personnes que vous pouvez conna #238;tre. Facebook donne aux ... Canciones con Letras Tablaturas y Acordes para Guitarra y Bajo (cifras partituras tabs chords). This site is all about a revolutionary technology that is capable of monitoring the whole genome on a chip. This printer-friendly page has been created and maintained ... Listing of French cinema titles held by MRC Avant-garde and Experimental Film ...From:Ukidy845Views:0 0ratingsTime:03:30More inPeople Blogs

Read the original:
JD Ross Leahy Discusses The Rosetta Project - Video

Syndemic Cinematic Gameplay Trailer
Syndemic is a randomly-generated action shooter game that emphasizes upgrades, quick reflexes, and microbial puzzle-solving in a biological setting. Take control of a unique microbe that can dodge, tumble and weave through bodily tissues and avoid swarms of invasive pathogens. Accumulate a massive arsenal of antibiotic weaponry, upgrade your genome and cell structure, and unleash powerful metabolic abilities. Explore the human body, destroy invading diseases, assist the immune system, and ultimately, discover your origin and the fate of your host. Planned Features: - Randomly-generated levels and environments filled with microscopic enemies and biological hazards. - Experience events inspired by real biology: chase down a cancer cell before it metastasizes, investigate prion sightings in the brain, clear cholesterol from the bloodstream, and guide immune cells to sites of infection. - More than 100 possible antibiotic weapon combinations, each with their own strengths and weaknesses, including rare #39;designer drugs #39; capable of mowing down dozens of enemies in a single secretion - Enlist or exploit the immune system; use the body #39;s cells as shields, tools to solve puzzles, or feed them your slain enemies to gain powerful allies - Stylized, living backgrounds that simulate the interior of the human body... travel the bloodstream, survive the stomach, and wage war in the brain! More information at: http://www.indiedb.comFrom:Alex MViews:10 3ratingsTime:01:36More inGaming

Read the rest here:
Syndemic Cinematic Gameplay Trailer - Video

Mutation of an Intron
The systematic mutation by just one base change of the 19 Dicer stems in a 24kb intron from the human genome. This graphic shows how SNPs placed in Dicer stems most probably are the cause of many disease phenotypes.From:Richard J. FeldmannViews:0 0ratingsTime:09:51More inScience Technology

Read more:
Mutation of an Intron - Video