The evolution of cheating in viruses – Nature.com

West, S. A., Griffin, A. S. & Gardner, A. Evolutionary explanations for cooperation. Curr. Biol. 17, R661R672 (2007).

CAS PubMed Google Scholar

Bourke, A. F. G. Principles of Social Evolution (Oxford University Press, 2011).

Davies, N. B., Krebs, J. R. & West, S. A. An Introduction to Behavioural Ecology (John Wiley & Sons, 2012).

West, S. A., Griffin, A. S. & Gardner, A. Social semantics: altruism, cooperation, mutualism, strong reciprocity and group selection. J. Evol. Biol. 20, 415432 (2007).

CAS PubMed Google Scholar

Ghoul, M., Griffin, A. S. & West, S. A. Toward an evolutionary definition of cheating. Evolution 68, 318331 (2013).

PubMed Google Scholar

Jones, E. I. et al. Cheaters must prosper: reconciling theoretical and empirical perspectives on cheating in mutualism. Ecol. Lett. 18, 12701284 (2015).

PubMed Google Scholar

Andersen, S. B., Marvig, R. L., Molin, S., Krogh Johansen, H. & Griffin, A. S. Long-term social dynamics drive loss of function in pathogenic bacteria. Proc. Natl Acad. Sci. USA 112, 1075610761 (2015).

ADS CAS PubMed PubMed Central Google Scholar

Griffin, A. S., West, S. A. & Buckling, A. Cooperation and competition in pathogenic bacteria. Nature 430, 10241027 (2004).

ADS CAS PubMed Google Scholar

Flower, T. Fork-tailed drongos use deceptive mimicked alarm calls to steal food. Proc. R. Soc. B Biol. Sci. 278, 15481555 (2011).

Google Scholar

Frederickson, M. E. Mutualisms are not on the verge of breakdown. Trends Ecol. Evol. https://doi.org/10.1016/j.tree.2017.07.001 (2017).

Jandr, K. C. & Herre, E. A. Host sanctions and pollinator cheating in the fig treefig wasp mutualism. Proc. R. Soc. B Biol. Sci. 277, 14811488 (2010).

Google Scholar

Ostrowski, E. A. et al. Genomic signatures of cooperation and conflict in the social amoeba. Curr. Biol. 25, 16611665 (2015).

CAS PubMed PubMed Central Google Scholar

Hamilton, W. D. The genetical evolution of social behaviour. J. Theor. Biol. 7, 116 (1964).

ADS CAS PubMed Google Scholar

West, S. A., Cooper, G. A., Ghoul, M. B. & Griffin, A. S. Ten recent insights for our understanding of cooperation. Nat. Ecol. Evol. 112, https://doi.org/10.1038/s41559-020-01384-x (2021).

Kirkwood, T. B. & Bangham, C. R. Cycles, chaos, and evolution in virus cultures: a model of defective interfering particles. Proc. Natl Acad. Sci. USA 91, 86858689 (1994).

ADS CAS PubMed PubMed Central Google Scholar

Frank, S. A. Within-host spatial dynamics of viruses and defective interfering particles. J. Theor. Biol. 206, 279290 (2000).

ADS CAS PubMed Google Scholar

West, S. A., Griffin, A. S., Gardner, A. & Diggle, S. P. Social evolution theory for microorganisms. Nat. Rev. Microbiol. 4, 597607 (2006).

CAS PubMed Google Scholar

Kramer, J., zkaya, . & Kmmerli, R. Bacterial siderophores in community and host interactions. Nat. Rev. Microbiol. 112, https://doi.org/10.1038/s41579-019-0284-4 (2019).

Gano-Cohen, K. A. et al. Recurrent mutualism breakdown events in a legume rhizobia metapopulation. Proc. R. Soc. B Biol. Sci. 287, 20192549 (2020).

CAS Google Scholar

Cordero, O. X., Ventouras, L.-A., DeLong, E. F. & Polz, M. F. Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations. Proc. Natl Acad. Sci. USA 109, 2005920064 (2012).

ADS CAS PubMed PubMed Central Google Scholar

Davies, N. B. Cuckoos, Cowbirds and Other Cheats (T & AD Poyser, 2010).

Meir, M. et al. Competition between social cheater viruses is driven by mechanistically different cheating strategies. Sci. Adv. 6, eabb7990 (2020).

ADS CAS PubMed PubMed Central Google Scholar

Shirogane, Y. et al. Experimental and mathematical insights on the interactions between poliovirus and a defective interfering genome. PLOS Pathogens. 17, e1009277 (2021).

CAS PubMed PubMed Central Google Scholar

Vignuzzi, M. & Lpez, C. B. Defective viral genomes are key drivers of the virushost interaction. Nat. Microbiol. 1, https://doi.org/10.1038/s41564-019-0465-y (2019).

Roux, L., Simon, A. E. & Holland, J. J. In Advances In Virus Research (eds Maramorosch, K., Murphy, F. A. & Shatkin, A. J.) Vol. 40, 181211 (Academic Press, 1991).

Daz-Muoz, S. L., Sanjun, R. & West, S. A. Sociovirology: conflict, cooperation, and communication among viruses. Cell Host Microbe 22, 437441 (2017).

PubMed PubMed Central Google Scholar

West, S. A., Fisher, R. M., Gardner, A. & Kiers, E. T. Major evolutionary transitions in individuality. Proc. Natl Acad. Sci. USA 112, 1011210119 (2015).

ADS CAS PubMed PubMed Central Google Scholar

Queller, D. C. & Strassmann, J. E. Beyond society: the evolution of organismality. Philos. Trans. R. Soc. Lond. B Biol. Sci. 364, 31433155 (2009).

PubMed PubMed Central Google Scholar

Sanjun, R. The social life of viruses. Annu. Rev. Virol. 8, 183199 (2021).

Flint, J., Racaniello, V. R., Rall, G. F. & Skalka, A. M. Principles of Virology (American Society of Microbiology, 2015).

Novak, J. E. & Kirkegaard, K. Coupling between genome translation and replication in an RNA virus. Genes Dev. 8, 17261737 (1994).

CAS PubMed Google Scholar

Alnaji, F. G. et al. Sequencing framework for the sensitive detection and precise mapping of defective interfering particle-associated deletions across influenza A and B viruses. J. Virol. 93, e00354-19 (2019).

Murphy, K. Janeways Immunobiology (Garland Science, 2011).

Domingo-Calap, P., Segredo-Otero, E., Durn-Moreno, M. & Sanjun, R. Social evolution of innate immunity evasion in a virus. Nat. Microbiol. 1, https://doi.org/10.1038/s41564-019-0379-8 (2019).

Landsberger, M. et al. Anti-CRISPR phages cooperate to overcome CRISPR-Cas immunity. Cell 174, 908916.e12 (2018).

CAS PubMed PubMed Central Google Scholar

Borges, A. L. et al. Bacteriophage cooperation suppresses CRISPR-Cas3 and Cas9 immunity. Cell 174, 917925.e10 (2018).

CAS PubMed PubMed Central Google Scholar

Erez, Z. et al. Communication between viruses guides lysislysogeny decisions. Nature 541, 488493 (2017).

ADS CAS PubMed PubMed Central Google Scholar

Huang, A. S. & Baltimore, D. Defective viral particles and viral disease processes. Nature 226, 325327 (1970).

ADS CAS PubMed Google Scholar

Simon, A. E., Roossinck, M. J. & Havelda, Z. Plant virus satellite and defective interfering RNAs: new paradigms for a new century. Annu. Rev. Phytopathol. 42, 415437 (2004).

CAS PubMed Google Scholar

Frensing, T., Pflugmacher, A., Bachmann, M., Peschel, B. & Reichl, U. Impact of defective interfering particles on virus replication and antiviral host response in cell culture-based influenza vaccine production. Appl. Microbiol. Biotechnol. 98, 89999008 (2014).

CAS PubMed Google Scholar

Christie, G. E. & Dokland, T. Pirates of the caudovirales. Virology 434, 210221 (2012).

CAS PubMed Google Scholar

Gnanasekaran, P. & Chakraborty, S. Biology of viral satellites and their role in pathogenesis. Curr. Opin. Virol. 33, 96105 (2018).

CAS PubMed Google Scholar

Chevallereau, A. et al. Exploitation of the cooperative behaviors of anti-CRISPR phages. Cell Host Microbe 27, 189198 (2020).

Kerr, B., Neuhauser, C., Bohannan, B. J. M. & Dean, A. M. Local migration promotes competitive restraint in a hostpathogen tragedy of the commons. Nature 442, 75 (2006).

ADS CAS PubMed Google Scholar

Skums, P., Bunimovich, L. & Khudyakov, Y. Antigenic cooperation among intrahost HCV variants organized into a complex network of cross-immunoreactivity. Proc. Natl Acad. Sci. USA 112, 66536658 (2015).

ADS CAS PubMed PubMed Central Google Scholar

Geoghegan, J. L. & Holmes, E. C. Evolutionary virology at 40. Genetics 210, 11511162 (2018).

CAS PubMed PubMed Central Google Scholar

Turner, P. E. & Chao, L. Prisoners dilemma in an RNA virus. Nature 398, 441443 (1999).

ADS CAS PubMed Google Scholar

Dennehy, J. J. & Turner, P. E. Reduced fecundity is the cost of cheating in RNA virus 6. Proc. R. Soc. B Biol. Sci. 271, 22752282 (2004).

CAS Google Scholar

RossGillespie, A., Gardner, A., West, S. A. & Griffin, A. S. Frequency dependence and cooperation: theory and a test with bacteria. Am. Nat. 170, 331342 (2007).

PubMed Google Scholar

Ghoul, M., West, S. A., Diggle, S. P. & Griffin, A. S. An experimental test of whether cheating is context dependent. J. Evol. Biol. 27, 551556 (2014).

CAS PubMed Google Scholar

Jiricny, N. et al. Fitness correlates with the extent of cheating in a bacterium. J. Evol. Biol. 23, 738747 (2010).

CAS PubMed Google Scholar

Pathak, K. B. & Nagy, P. D. Defective interfering RNAs: foes of viruses and friends of virologists. Viruses 1, 895919 (2009).

CAS PubMed PubMed Central Google Scholar

von Magnus, P. Studies on Interference in Experimental Influenza Vol. 1 (Almqvist & Wiksell, 1947).

Rezelj, V. V., Levi, L. I. & Vignuzzi, M. The defective component of viral populations. Curr. Opin. Virol. 33, 7480 (2018).

PubMed Google Scholar

Nee, S. & Maynard Smith, J. The evolutionary biology of molecular parasites. Parasitology 100, S5S18 (1990).

PubMed Google Scholar

Szathmry, E. Co-operation and defection: playing the field in virus dynamics. J. Theor. Biol. 165, 341356 (1993).

ADS PubMed Google Scholar

Brown, S. P. Collective action in an RNA virus. J. Evol. Biol. 14, 821828 (2001).

Google Scholar

Chao, L. & Elena, S. F. Nonlinear trade-offs allow the cooperation game to evolve from Prisoners dilemma to snowdrift. Proc. R. Soc. B 284, 20170228 (2017).

See the original post here:

The evolution of cheating in viruses - Nature.com