Final rule on Stage 2 of EHR incentive program issued

Courtesy of Modern Healthcare By Rich Daly (August 23, 2012)

The final requirements that hospitals and other providers must meet to receive funding under the second phase of the federal electronic health record incentive program were issued Thursday. The Stage 2 meaningful-use requirements that providers must satisfy to receive payments under the program that provides incentive payments to Medicare and Medicaid providers that adopt qualifying EHRs will go into effect in early 2014, according to a final rule (PDF) issued by the CMS and the Office of the National Coordinator for Health Information Technology. The program had previously planned for providers to satisfy Stage 2 requirements in 2013. The rule outlined the certification criteria that electronic health-record makers must satisfy for their products to meet the program's standards. The new rules modified the certification program to “cut red tape and make the certification process more efficient,” according to an agency news release. “The changes we're announcing today will lead to more coordination of patient care, reduced medical errors, elimination of duplicate screenings and tests and greater patient engagement in their own care,” HHS Secretary Kathleen Sebelius said in a news release.


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The final rule adds two new "core objectives" to the Stage 2 reporting requirements for physicians and hospitals. The first requirement, for physicians, is to use secure electronic messaging to communicate relevant health information with patients. The second requirement, for hospitals, is to automatically track medications from order to administration using "assistive technologies in conjunction with an electronic medication administration record (eMAR)."

The final rule also adds "outpatient lab reporting" to the program's menu objectives for hospitals and "recording clinical notes" as a menu objective for both physicians and hospitals. 

The rule lowered the requirement that providers submit summaries of care from 65% of “transitions of care and referrals” to just 50%. Additionally, it eliminated the organizational and vendor limitations in the requirement that providers electronically transmit a summary of care for more than 10% of transitions of care and referrals to another provider with no organizational or vendor affiliations.

Also, the final rule modifies the definition of "hospital-based" physicians to create an application process for physicians to demonstrate that they alone fund their EHR systems and are eligible to receive the incentive payments, directly.

Since the program began in January 2011, more than 120,000 eligible healthcare professionals and more than 3,300 hospitals have qualified to participate and receive incentive payments, according to the CMS. The rates of participation include more than half of all eligible hospitals and about 20% of eligible healthcare professionals.

The Stage 3 phase will add another layer of health data collection and reporting requirements for the participating providers. Medicare providers that do not successfully participate by 2015 will begin to face cuts in their overall payments from the program.

An earlier version of the story implied that the final rule dropped information-sharing requirements. They remain in place, with some adjustments.

Read more: Final rule on Stage 2 of EHR incentive program issued | Healthcare business news and research | Modern Healthcare 

 

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Leica Biosystems to Acquire Aperio

Nussloch, Germany / Vista, CA (August 21, 2012)
Leica Biosystems announced that an affiliate has entered into a definitive
agreement to acquire Aperio, a leading provider of ePathology solutions.

Aperio will be integrated into Leica Biosystems, a leader in
anatomical pathology solutions. Together, the two businesses will leverage each
other’s strengths to grow and expand digital pathology into the global Life
Science and Healthcare markets. The integrated business will provide industry
leading solutions in each step of the anatomical pathology workflow, from sample
preparation and staining, to imaging and reporting. The company will continue to
offer both the Aperio and the existing Leica portfolio of Digital Pathology
solutions, so that customers will enjoy more freedom to choose a solution that
meets their individual needs. 

Aperio is a global leader in digital pathology, with the
largest installed base of systems in both Life Science and Healthcare. Aperio
ePathology Solutions include whole slide scanners, a NETWORK solution that
enables remote, real-time viewing and easy distribution of images for peer
review, collaboration and consultation. Its PRECISION solution provides
pathologists with easy-to-use quantitative image analysis to improve research
and clinical productivity, reproducibility, and consistency. Customers include
clinicians and researchers working in hospitals, reference laboratories, pharma
and research institutions.

“We are excited to acquire Aperio, because of its leadership
in digital pathology, innovative product portfolio, and its very experienced
global team. We share the commitment to advancing cancer diagnostics to improve
lives. This acquisition positions us to better address the growing demand for
personalized medicine and the increasing challenge of staff shortage in the
global pathology market. Together we offer the market an end-to-end solution
from the time that the specimen is collected to the time that the results are
delivered, to help our customers improve workflow efficiency and diagnostic
confidence,” said Arnd Kaldowski, President of Leica Biosystems.

“We believe that Aperio will benefit from the heritage, deep
pathology expertise, and strong brand recognition of Leica Biosystems”, said
David Schlotterbeck, CEO of Aperio. “The combined product offerings and improved
reach into the diagnostic market will make our ePathology Solutions more widely
available.  We see our goals as synergistic and together we can address the
regional and global imbalances of pathology expertise available for patient care
and research.”

About Leica Biosystems

Leica Biosystems offers histopathology laboratories the most
extensive product range with industry leading solutions for each workflow step,
to enable the improvement of workflow efficiency and diagnostic confidence.
Leica Biosystems is represented in over 100 countries. It has manufacturing
facilities in 7 countries, sales and service organizations in 19 countries, and
an international network of dealers. The company is headquartered in Nussloch,
Germany. Further information can be found at http://www.LeicaBiosystems.com

About Aperio

For over a decade, Aperio has advanced the technology that
enables glass slides to be digitized and securely shared with others. Aperio
products are transforming the practice of pathology in hospitals, reference
labs, and pharmaceutical and research institutions around the world. From the
moment glass slides are elevated to eSlides, Aperio ePathology Solutions equip
pathologists with the power to evaluate, engage, and excel like never before.
The NETWORK enables remote, simultaneous, real-time viewing and easy
distribution for consults and collaboration. PRECISION tools empower
pathologists with advanced analytic capabilities. An interoperable, scalable,
and secure web-based software platform facilitates integration with existing
systems. With Aperio ePathology Solutions, organizations can optimize their
pathology operations for transparency, consistency, and efficiency to support
patient care, personalized medicine, and research. For clearance updates,
specific product indications, and more information please visit http://www.aperio.com

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2012 Republican National Convention Interim Telemedicine Travel Insurance From MD 247

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Tampa Florida (PRWEB) August 20, 2012

On Monday afternoon, MD 247 announced that it was launching an exclusive “2012 Republican National Convention supplemental travel healthcare protection plan.” The 2012 Republican National Convention in Tampa Florida also happens to coincide with the peak of the 2012 hurricane season, a fact that the telemedicineprovider MD 247 reviewed and is keenly aware of.

In order to deal with the health issues that often arise during tropical storms and hurricanes, MD 247 has announced the launch of its $9.95 interim travel telemedicine healthcare protection plan. The plan grants the entire traveling party 24/7 telephone access to trained medical professionals, easy prescription refill procedures and peace of mind in case a storm strikes.

The interim travel telemedicine healthcare protection plan is meant to help visitors to Tampa Florida get beyond the minor illnesses that tropical storms tend to “kick-up.” Effectively, MD 247 looks to make the visit to Tampa for the 2012 Republican National Convention a seamless journey and easy even on the medical frontier.

Largo Florida based MD247.COM (MD247; MD/247; MD 247; M.D.247; MD-247) provides an affordable telemedicine supplement to existing healthcare services.MD247.COM telemedicine program members have unlimited telephone access to a nationwide medical support team, all with just a single phone call to theMD247.COM telemedicine Talk to a Doctor/Talk to a Nurse Hotline. MD247.COM has a virtual platoon of registered nurses; board certified physicians and a support staff available to members for all non-emergency situations. More information aboutMD247.COM is available online at http://www.md247.com.

Read the full story at http://www.prweb.com/releases/2012/8/prweb9819334.htm

 

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Aperio Technologies Receives $450,450 New Funding Round

Venture Capital

  • Date: 7/20/2012
  • Company Name: Aperio Technologies
  • Mailing Address: 1360 Park Center Dr. Vista, CA 92081
  • Company Description: Aperio is digitizing pathology. We provide systems and services for digital pathology, a digital environment for the management and interpretation of pathology information that originates with the digitization of a glass slide.
  • Website http://www.aperio.com
  • Transaction Type: Debt
  • Transaction Amount: $450,450
  • Transaction Round: Undisclosed
  • Proceeds Purposes: Proceeds purposes were not disclosed.  SEC regulatory filing.
  • Venture Investor: Undisclosed

Related Posts

 Venture Capital

Source: http://www.xconomy.com

Read more : http://www.xconomy.com/san-diego/2012/07/20/aperio-technologies-receives-450450-new-funding-round/

 

 

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Canadian Boy Gives Medal to Olympians

First heard this on ESPN Radio over the weekend. If you haven't heard/read the story yet -worth the read.  There is still hope for humanity...

A 10-Year-Old Boy Sent His Medal To The Canadian Olympians Who Lost Theirs Through Disqualification

Adam Taylor | Aug. 15, 2012, 5:42 PM 

It was a sad sight to see the Canadian team get disqualified in the men's Olympic 4x100 meter relay after Jared Connaughton stepped out of his line. The team lost their bronze medal and were photographed in tears.

However, one 10-year-old fan stepped in to help, offering the team a medal he had won in a recent soccer tournament.

On Monday Justyn Warner tweeted the letter and medal Newfoundland resident Elijah Porter had sent him and his teammates. Porter's kind action will receive its own reward too — Canadian coffee chain Tim Hortens has announced they will give him a medal and a bicyle for his efforts.

Here's the letter: 

Elijah Porter Letter

https://twitter.com/justynwarner

Here's a transcription (via Reuters):

"Dear Justyn, Gavin, Jarred and Oluseyi,

"I'm Elijah Porter. I'm ten and I live in Newfoundland, Canada. When I heard what happened on Aug. 11, I knew it was wrong. The rules were not right. But, at last, I realized how good you were.

"We're Canadians. We persevere. We create better lives for each other. The cold didn't stop us from living in the North. We didn't lose the War of 1812. We adapt and survive. We earned our freedom. 

"Someday if I become a biologist, or if I get rich, and, if I remember, I will donate money to the summer and winter Olympians. I hope you like the medal!"

Read more: http://www.businessinsider.com/elijah-porter-sends-his-medal-to-the-canadian-olympians-who-lost-theirs-through-disqualification-2012-8#ixzz245u4C7wP

 

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Toxicology unit at St Thomas’ Hospital threatened with closure

London SE1 website team London SE1 community website

Vital organ donation procedures could be hit by the proposed closure of the specialist toxicology service at St Thomas' Hospital, trade union representatives have warned.

A private sector pathology company, GSTS recently formed by Serco with two NHS foundation trusts is set to close a specialist toxicology service which is the sole provider of vital tests in the South East.

The Unite union claims that the nearest alternative laboratories for some procedures would be Birmingham, Cardiff and Sheffield.

The St Thomas' Hospital unit now employs seven specialist toxicology scientists with more than 120 years of experience between them and staff have been given 30 days notice that the centre is to close.

Unite's head of health Rachael Maskell said: "We believe that the closure of this internationally-renowned toxicology service is a result of the government's privatisation policy. Private companies are only interested in services that will make them profit, not in their life-saving clinical value.

"We now face the terrible prospect that vital organ life-saving procedures could be jeopardised by the closure of this specialist centre the only one in the South East. The claim made by David Cameron that the NHS is safe in Tory hands is in tatters."

"Health Secretary, Andrew Lansley should step in immediately to block this closure as it threatens patient welfare."

Rachael Maskell pointed out that the service has not been allowed to review its costs since 2006 and that many of its money-making services, such as the advisory service have been separated off from the main business.

Rachael Maskell added: "It's insane that a vital service is being shut and that staff are being made redundant at a cost of over 680,000 because this does not fit in with the business aims of the private sector."

Excerpt from:
Toxicology unit at St Thomas' Hospital threatened with closure

Record profit as Sonic Healthcare booms

Sonic Healthcare expects expansion in the United States and Germany to boost its growth, despite the gloomy US economy.

The international pathology, radiology and medical centres group on Tuesday reported a record net profit for the 2011/12 financial year, up 7.3 per cent to $316 million compared with the previous 12 months.

Chief executive Dr Colin Goldschmidt said the company expected to increase its earnings by five to 10 per cent this financial year, pointing to the US and Germany as key markets for future growth.

"Our big growth for the future is probably going to come out of the USA and Germany where the markets are still quite fragmented and our positions are still relatively young," he told investors.

By comparison, the Australian laboratory market was more mature and consolidated, he said.

Revenue growth in the US for 2011/12 year ending June 30 was 11 per cent, including acquisitions.

But once acquisitions were stripped out, that left organic growth at just two per cent.

"That sounds low but we have an unprecedented low-growth environment in the US lab market," he said.

"That two per cent is higher than our major competitors have reported recently."

The low growth was probably associated with the high unemployment rates in the US, where private health insurance is provided by employers, Dr Goldschmidt said.

Originally posted here:
Record profit as Sonic Healthcare booms

Advances in Molecular Diagnostics, Genetic Testing, and Personalized Medicine to Be Focus at CAP ’12 — THE …

Annual Scientific Meeting of the College of American Pathologists Gives Special Attention to Lung Cancer

Newswise NORTHFIELD, ILL. New science in molecular diagnostics, personalized medicine, and genetic testing for cancer will be featured topics when more than 1,000 pathology leaders gather at the Manchester Grand Hyatt on September 9-12, 2012, for the annual scientific meeting of the College of American Pathologists (CAP). CAP 12THE Pathologists Meeting will highlight advances in anatomic and clinical pathology related to laboratory medicine with a special focus on pulmonary pathology, the diagnosis of lung disease.

Revolutions in the molecular understanding of cancer have changed the way pathologists diagnose this disease and guide treatment, said CAP President Stanley J. Robboy, MD, FCAP. Today, the most effective treatment options are based on appropriate testing, accurate diagnosis, and a team approach to patient care one that includes the pathologist. Weve created a curriculum at our annual meeting for pathologists to keep current on the new diagnostic procedures that can enhance patient care.

At CAP 12, expert pathologists from around the globe will lead educational seminars that provide practical tools, which pathologists can immediately incorporate into their practices. Hot topics include breakthroughs in the molecular testing of lung cancer, a disease that strikes more than 230,000 Americans each year. This special scientific session will offer perspectives from one of the nations leading pathology experts in the study of lung cancer, Marc Ladanyi, MD, FCAP, an attending pathologist on the Molecular Diagnostics Service in the Department of Pathology at Memorial Sloan-Kettering in New York, and Kim Norris, a UCLA Lung SPORE patient advocate and president of the Lung Cancer Foundation of American. Additional hot topics include: o Next-Generation Sequencing for Inherited Disorders o Companion Diagnostics for Targeted Therapy Cancer o Treatment Implication of ER-Positive and HER2-Positive Breast CancerThe Critical Role of Pathologists o Molecular Classification of Multiple Myeloma Using Genomic Profiling

Abstract Program Showcases Junior CAP Members Original Research As part of the CAP 12 Abstract Program, five CAP physician residents will receive special recognition for outstanding original research. Editors from the Archives of Pathology & Laboratory Medicine evaluated the submissions. This years winning abstracts cover a range of topics, including major discrepancies between clinical and postmortem pediatric diagnoses, and a large multi-institutional study that sought to determine whether the 2-tier ovarian serous carcinoma grading system was useful in stratifying these carcinomas.

CAP Will Honor San Diego High School Students for Excellence in Science Additionally, the CAP is honoring six of the best and brightest high school science students in San Diego through its Path to the Future in Medicine program. As part of this program, the students are invited to display their winning projects at CAP 12. In addition, they will have the opportunity to tour the CAP 12 meeting and discuss possible careers in medicine and science, as well as general science issues, with leaders in pathology.

The students, who competed at the 2012 Greater San Diego Science and Engineering Fair in March were judged for excellence in five areas: creativity, scientific thought, attention to detail, skill, and clarity.

The College of American Pathologists (CAP), celebrating 50 years as the gold standard in laboratory accreditation, is a medical society serving more than 18,000 physician members and the global laboratory community. It is the worlds largest association composed exclusively of board-certified pathologists and is the worldwide leader in laboratory quality assurance. The College advocates accountable, high-quality, and cost-effective patient care.

### Editors note: Please call Julie Monzo at 847-832-7538, or e-mail jmonzo@cap.org, for free media registration. Or visit our Web site at: http://www.cap.org/CAP12.

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Advances in Molecular Diagnostics, Genetic Testing, and Personalized Medicine to Be Focus at CAP '12 -- THE ...

Sonic unveils record full year profit

Pathology and radiology provider Sonic Healthcare says it expects to increase its earnings by up to 10 per cent after posting a record profit for the 2011/12 financial year.

Sonic, which operates in the United States and Australia, lifted its net profit by 7.3 per cent to $316 million in the year to June 30, from $294.5 million in 2010/11.

On a constant currency basis, the net profit result was $323.3 million.

Revenue rose eight per cent to $3.3 billion, from $3.1 billion.

Sonic's earnings benefited from strong organic revenue growth, cost cuts, operational improvements and better returns on invested capital.

In a statement, Sonic said it expected to grow its earnings by between five and 10 per cent, on a constant currency basis.

It also expects its net interest expenses to fall by between five and 10 per cent.

Chief executive Dr Colin Goldschmidt said Sonic had won market share from its rivals during the year and that its record net profit would have been even higher if it weren't for the impact of the strong Australian dollar.

He said the pathology and radiology divisions each increased their margins.

However, the pathology business struggled with constrained growth in the US and cost pressures in Australia as a result of the deregulation of collection centres.

View post:
Sonic unveils record full year profit

Couple of reasons to attend Pathology Visions 2012

 Just a couple of reasons to attend Pathology Visions 2012:

KENNETH BLOOM

IMPLEMENTING A HIGH VOLUME DIGITAL PATHOLOGY REFERENCE LABORATORY

Bio
Kenneth_BloomDr. Bloom is Chief Medical Officer of Clarient a GE Healthcare company, Medical Director of Clarient Diagnostic Services and President of Clarient Pathology Services. Dr. Bloom specializes in pathology with a special interest in breast disease and esoteric testing including immunohistochemistry, fluorescence in-situ hybridization and molecular analysis. Dr. Bloom has spent more than two decades serving in leadership and advisory roles for hospitals, medical schools and industry. He has been a prolific researcher and lecturer in the fields of pathology, cancer, telemedicine and informatics. While at Rush Dr. Bloom was a principle investigator in the design and implementation of the first commercial telepathology system as well as the information systems used for Anatomic Pathology, Surgery, Cancer Registry and Radiation Therapy. Dr. Bloom is a member of the College of American pathologists and serves as a member of the Technology Assessment Committee Personalized Healthcare Committee.

Abstract
Clarient has been a leader in digital pathology since its start in 2004. We digitize over 2000 slides each day utilizing a variety of commercial scanners for diagnostic, prognostic and predictive indications. Approximately 50-60 consults are reviewed each day by a combination of our internal pathology team, remote Clarient pathologists and our network of academic pathologists around the country. Consultation slides are scanned at 20X magnification and reviewed on-line utilizing our proprietary viewer. Since all slides are digitized, real time consultation with clients and pathologists across the country is routine. Prognostic and predictive testing is performed on over 30,000 breast cancer cases each year, and most of our clients choose to utilize image analysis algorithms to aid them in their interpretation. An expanding portfolio of non-breast prognostic and predictive markers are being added these markers become relevant to patient care. I will discuss the issues that we faced building and then scaling a digital pathology service. Our analysis of scanners, viewers, image analysis software and image storage will be presented.

Objectives
1) Define the components of a digital pathology system.

2) Describe the pros and cons of available digital pathology solutions.

3) Understand the process of implementing a digital pathology solution in a CLIA laboratory.

 

 

 

 

 

PRASHANT BAVI

USE OF DIGITAL PATHOLOGY SIGNIFICANTLY IMPROVES THE QUALITY OF TISSUE MICROARRAY CONSTRUCTION

Bio
PbPrashant Bavi is a research pathologist at Research Centre, King Faisal Specialist Hospital, Riyadh, Saudi Arabia. He has a successful track record of over 50 publications in high impact peer reviewed journals and more than 70 presentations in international meetings. With 12 years of experience, he is well versed in oncology, biobanking, digital pathology, translational research & lab administration. Over the years, he has developed a diverse set of skills in anatomical pathology, molecular pathology, data management & biomarker validation. Other areas of his competence are scientific writing including reviewing manuscripts & serving on the editorial board. An avid proponent of digital pathology, he firmly believes in inculcating principles of productivity & time management such lateral thinking, mind mapping & “Getting Things Done” in research & diagnostic pathology. His long-term goals are harvesting the best quality samples, participate in meaningful biomarker discovery & making an impact on personalized medicine.

Abstract
Background: In the last decade, tissue microarray(TMA) has been established in translational cancer research as a high throughput tool. Similar to digital pathology, traditional purists took time to adopt TMAs as a tool in biomarker discovery and validation; teaching and as a IHC control for validation. Technology transfer, setting aside funds to purchase an arrayer, and dedicated personnel to map slides and construct TMA are still major bottle necks. Final quality of a constructed TMA depends on the yield of slides and the number of representative cores arrayed. Study of rare events in pathology pose a particular challenge for the lab personnel to accurately identify the area of interest by superimposing the slide on the paraffin block before extracting the tissue core. Therefore, we studied the effect of digital pathology in mapping the region of interest and constructing TMA’s.

Methods: We constructed two identical TMA blocs of 0.6mm diameter from 50 rare histological events that included R&S cells from Hodgkin’s lymphoma, multifocal microscopic carcinoma in thyroid and lymphovasuclar embol/perineural infiltration in colorectal carcinoma. One array block was done in the traditional way and the other array we did digital mapping of scanned images from slides, printing the life-sized images. Slides were scanned with Aperio ScanscopeCS; mapping done with Imagescope and TMA constructed using Semiautomated Arrayer, CM1 Mirlacher, Neuenburg, Germany. Using a image manipulation program IrfanView, we printed the images in the same aspect ratio as it was scanned on a semi-transparent paper.

Results: Preliminary results of 10 microscopic multifocal papillary thyroid carcinoma showed a 100% accuracy in picking up the microscopic lesions as compared to 60% with the traditional approach. Remarkably accuracy was associated with a increase in speed.

Conclusions: Modifying the process of TMA construction by embracing digital pathology is beneficial and should be adopted routinely. The tangible benefits are:(i) improved accuracy; (ii) saves time (iii) increases the speed; (iv) potentially reduces errors of misidentification and (v) frees up the lab technician to be utilized for other tasks.

Objectives
Although tissue microarray technology, as a high throughput tool, has revolutionized biomarker discovery in translational research, it has some key bottlenecks. Digital pathology has been used in IHC quantification. However, there is a potential of using scanned images for constructing tissue microarrays Embracing of these 2 technologies has immediate tangible benefits of improvement in speed, accuracy, saving of time and freeing up scarce technical staff. In addition this methodology reduced risk of misidentification and provides robust documentation of mapped images on for future usage.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

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Breaking News: Federal Appeals Court Once Again Upholds Gene Patents, Invalidates Comparison Method Patents

The U.S. Court of Appeals for the Federal Circuit announced that it once again partially reversed a lower court’s ruling in the Myriad gene patent case. In a 2-1 decision, the federal court of appeals ruled that companies can patent genes, but cannot patent methods to compare those gene sequences.

This is the second time the Federal appeals court has considered this lawsuit. The Supreme Court vacated this court’s July 2011 decision following the high court’s unanimous ruling in favor of Mayo Collaborative Services in its medical patent suit against Prometheus Laboratories. The Supreme Court then remanded it back to the Federal appeals court in light of the Mayo decision.

The American Civil Liberties Union (ACLU) is representing plaintiffs (including the CAP) in a suit challenging gene patents on human DNA, specifically Myriad Genetics’ patent claims on BRCA 1 and BRCA 2 genes. CAP and other medical societies and organizations provided amicus briefs in support of Mayo at various points in the litigation.

“It is extremely disappointing that despite the Supreme Court’s ruling, the appeals court has failed to fully re-consider the facts of this case,” said ACLU attorney Chris Hansen. “This ruling prevents doctors and scientists from exchanging their ideas and research freely. Human DNA is a natural entity like air or water. It does not belong to any one company.”

The ACLU declined to comment on what this means for the future of the case, except to say their attorneys are weighing all legal options and will discuss future strategies with the plaintiffs.

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Should/Could the FDA Regulate Whole Slide Imaging as a Class II Device?

Frequent readers and those who have heard me speak publicly on the topic of government regulation and oversight of whole slide imaging recognize that I really do not think that manufacturers need a stamp of approval from the FDA to the effect that "FDA Approved for Primary H&E Diagnosis" on their claims and marketing materials.  Perhaps manufacturers think they do because their sense is that more and more pathologists will in fact buy the technology if it indeed has that stamp of approval that the agency concerned with regulating food, drugs and devices in the bests interests of patient safety and assuring apprropriate risk:benefit ratios says it is OK to use for primary diagnosis.

With that being said, we now know it is unlikely that these devices will be regarded as Class I devices (see below).  As they will not be regarded as Class I, I think the device or instrument in question is then regarded as a Class III device requiring pre-market approcal "for which insufficient information exists to assure safety and effectiveness solely through the general or special controls sufficient for Class I or Class II devices" (see below according to The FDA Class Classification).

Why then could whole slide imaging devices/systems not be regarded as Class II?  

FDA_salmonellaLet's assume with whole slide imaging is regarded as being higher risk for potential injury or harm than a Class I device historically and essentially, according to the definition, "for which general controls alone are insufficient to assure safety and effectiveness, and existing methods are available to provide such assurances. In addition to complying with general controls, Class II devices are also subject to special controls. A few Class II devices are exempt from the premarket notification. Special controls may include special labeling requirements, mandatory performance standards and postmarket surveillance. Devices in Class II are held to a higher level of assurance than Class I devices, and are designed to perform as indicated without causing injury or harm to patient or user."

Don't we actually have this with digital pathology today?  Special labeling requirements, i.e. certain stains from certain vendors for purposes of prognostic and therapeutic testing (ER, PR, HER2, Ki-67), mandatory performance standards, i.e. constant review, quality assurance, correlations and peer reviews in surgical pathology, a degree of scrutiny unrivaled in any specialty in medicine in terms of self-auditing ourselves and lastly, postmarket surveillance. Here we have 100s of papers written with 1000s of cases studied in peer-reviewed literature and decades worth of experience as a specialty.  In a recent survey on digital pathology conducted, 20% of respondents  mentioned using digital pathology for primary clinical diagnosis.

Usesfordp

In a more recent follow up post on the survey a couple of weeks ago, there was discussion of the best use cases for digital pathology.  They are what this survey affirms, in my opinion, image analysis, i.e. ER/PR/HER2 scoring and second opinions/consultations/expert reviews.

Unless your practice is in New York and you are in Aspen, in which case you probably either need to move your lab or move yourself, I do not understand the need for "Primry H&E Diagnosis" by digital pathology.  The instances I can think of include in-office laboratories and the occassional times when you are in Aspen, 1000s of miles from your histology laboratory on a temporary basis.  Given the number of times of these occurrences and the number of slides produced and read in these types of practice settings, it is a very small percentage of the estimated tens of millions of slides produced annually in the United States.

Nonetheless, assuming we recognize more risk than the microscope itself in this instance (a Class I exempt device) and we are held to "special controls may include special labeling requirements, mandatory performance standards and postmarket surveillance", it would seem logical that whole slide imaging devices/systems be regarded as Class II and allow the market and practioners to define the nuances of these controls, standards and postmarket surveillance conditions.

--------------------------------------------------------------------------------------------------------------------------

FDA Device Class Classification (as cut and pasted from Wikipedia):

The Food and Drug Administration has recognized three classes of medical devices based on the level of control necessary to assure the safety and effectiveness of the device.  The classification procedures are described in the Code of Federal Regulations, Title 21, part 860 (usually known as 21 CFR 860).

Class I: General controls

Class I devices are subject to the least regulatory control. Class I devices are subject to "General Controls" as are Class II and Class III devices. General controls include provisions that relate to adulteration; misbranding; device registration and listing; premarket notification; banned devices; notification, including repair, replacement, or refund; records and reports; restricted devices; and good manufacturing practices. Class I devices are not intended for use in supporting or sustaining life or to be of substantial importance in preventing impairment to human health, and they may not present a potential unreasonable risk of illness or injury. Most Class I devices are exempt from the premarket notification and/or good manufacturing practices regulation. Examples of Class I devices include elastic bandages, examination gloves, and hand-held surgical instruments.

Class II: General controls with special controls

Class II devices are those for which general controls alone are insufficient to assure safety and effectiveness, and existing methods are available to provide such assurances. In addition to complying with general controls, Class II devices are also subject to special controls. A few Class II devices are exempt from the premarket notification. Special controls may include special labeling requirements, mandatory performance standards and postmarket surveillance. Devices in Class II are held to a higher level of assurance than Class I devices, and are designed to perform as indicated without causing injury or harm to patient or user. Examples of Class II devices include powered wheelchairs, infusion pumps, and surgical drapes.

Class III: General controls and premarket approval

A Class III device is one for which insufficient information exists to assure safety and effectiveness solely through the general or special controls sufficient for Class I or Class II devices. Such a device needs premarket approval, a scientific review to ensure the device's safety and effectiveness, in addition to the general controls of Class I. Class III devices are usually those that support or sustain human life, are of substantial importance in preventing impairment of human health, or which present a potential, unreasonable risk of illness or injury. Examples of Class III devices which currently require a premarket notification include implantable pacemaker, pulse generators, HIV diagnostic tests, automated external defibrillators, and endosseous implants.

 

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GOP VP Candidate calls SGR “Ridiculous”

 Courtesy of ModernHealthcare Healthcare Business News

Rep Paul Ryan VP candidate
Ryan

Exclusive interview: Rep. Paul Ryan discusses need for 'market-based' health reform

Premium support an idea whose time has come, Ryan says

By Andis Robeznieks

Posted: August 14, 2012 - 12:45 pm ET
Wisconsin Rep. Paul Ryan's selection as the Republican vice presidential nominee has put Medicare reform back in the national spotlight, as Ryan's plans for transforming Medicare into a "premium support" system gain renewed attention.

Of particular significance is how Ryan's plan to offer beneficiaries federal payments to pick the health plan of their choice goes over with voters in Florida and Pennsylvania—two presidential battleground states with large Medicare-beneficiary populations.

Ryan, who finished first last year on Modern Healthcare's 100 Most Influential People in Healthcare list, was interviewed Aug. 2 by Modern Healthcare for an upcoming story, just nine days before presumptive GOP presidential nominee Mitt Romney announced that the 42-year-old member of the House Ways and Means Committee would be his running mate.

In the interview, Ryan emphasized that premium support wasn't only his idea or a Republican idea. He pointed out that he proposed last year's Medicare-reform plan jointly with Oregon Democrat Sen. Ron Wyden. Premium support's origins, he added, can be traced to President Bill Clinton's 1999 Bipartisan Commission on the Future of Medicare and its Democratic co-chair, Rep. John Breaux of Louisiana.

"This is an idea whose time has come," Ryan said. "And it's a bipartisan idea."

Ryan acknowledged that the idea takes some getting used to and said he knew that Congress would not pass last year's proposal.

"What Ron Wyden and I tried to do was to plant the seeds of a bipartisan consensus," Ryan said. "We knew we weren't going to pass it because of the politics. We did this together to get the consensus-building started."

To that end, Ryan said the plan's chances for approval will greatly improve next year.

"I'm actually pretty optimistic," he said.

Ryan said he heard from "some of his doctor friends" at the Wisconsin Medical Society that his plan was the subject of heated debate at the annual American Medical Association House of Delegates meeting in June and that he has had "years of conversations" about premium support with physicians in his state.

“I think it's a good debate,” he said. Medicare, Ryan said, can go in two directions: toward government-directed price controls as dictated by the Independent Payment Advisory Board or toward premium support, which he said "keeps the patient-doctor relationship intact."

"That to me is the best way to deal with costs and save this program," Ryan said. "Competition does work."

Ryan said he envisions a risk-adjusted program in which beneficiaries who need more support get it and said that risk adjustment is "something CMS knows how to do."

"Physicians are also involved in getting proper incentive alignment focused on quality and cost," Ryan stated. 

“This will help everyone: Sick or healthy, wealthy and poor,” he added. “We can put society's assets where they need to go and emerge from that with a system that is in keeping with our goals of innovation, competition and quality improvement.”

Ryan also said the U.S. should undertake healthcare reform on its own and "fix this on our terms" instead of borrowing ideas from Europe.

"We believe there are far superior ways to get back to a patient-centered healthcare system, the nucleus of which is the patient and her doctor—and not the government," Ryan said. "We believe consumer-driven, market-based reforms do more to alter the cost curve of healthcare inflation."

Ryan said price controls won't bend the healthcare inflation cost curve and would lead to rationing of services.

Ryan credited his selection last year as the most influential person in healthcare to his having had a seat on the House Ways and Means Committee since 2001 and used that position to focus on the healthcare system's impact on health outcomes and economic and social issues.

"It's just something I've immersed myself in," Ryan said. "What a lot of policymakers have failed to grasp is how important healthcare is to our economy and to our future."

Ryan also predicted that Congress would approve another temporary postponement of a physician Medicare payment cut in January of around 30% under the sustainable growth-rate formula used to calculate reimbursement.

"I think the SGR is ridiculous and should have been replaced long ago," Ryan said, adding that he hopes to replace the SGR next year with a formula that furnishes doctors with something predictable and accountable so that "we don't have this can-kicking exercise every six months."

While the SGR has not worked, Ryan said something worse lurks ahead.

“I always say to the doctors, 'If you don't like the SGR, just wait until you see what the IPAB has in store,'” Ryan said.

Read more: Exclusive interview: Rep. Paul Ryan discusses need for 'market-based' health reform, Premium support an idea whose time has come, Ryan says | Modern Healthcare 

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Leslie F. Greengard, M.D., Ph.D., Appointed to AccelPath Medical Advisory Board

AccelPath, Inc. (ACLP) (“AccelPath” or the “Company”) announced today that Professor Leslie F. Greengard, M.D., Ph.D., has been appointed to the Company’s Medical Advisory Board.

Professor Greengard is a Professor of Mathematics and Computer Science at the Courant Institute of Mathematical Sciences at New York University. He received his B.A. degree in Mathematics from Wesleyan University in 1979, his M.D., and Ph.D. degree in Computer Science, from Yale University in 1987. He has been at the Courant Institute since 1989, and served as the director of the Institute from 2006-2011.

Research in Professor Greengard's group is largely focused on developing fast and adaptive algorithms for computational problems in biology, chemistry, materials science, medicine, and physics. He is best-known for having developed the fast multipole method (FMM) during the 1980s with Professor V. Rokhlin, which is now widely used in electromagnetics, astrophysics, molecular simulations, and fluid dynamics. He currently works on protein design, the analysis of "metamaterials," electromagnetic theory, diffusion in complex geometry, and magnetic resonance imaging.

Professor Greengard has been an NSF Presidential Young Investigator and a Packard Foundation Fellow. He received the Leroy P. Steele Prize from the American Mathematical Society in 2001 and the Sokol Faculty Award in the Sciences from NYU in 2004. In 2006, he was elected to both the National Academy of Sciences and the National Academy of Engineering.

“After numerous discussions with AccelPath’s management and board members, I am pleased to join the Company’s Medical Advisory Board,” stated Professor Greengard. “The Company is on an exciting road of implementing digital telepathology networks in the US and abroad. The Company also has powerful 3D imaging technology with multiple applications in medicine. I look forward to contributing to the Company’s ongoing successes.”

“We are very pleased to have formalized a collaborative relationship with Professor Greengard,” stated Shekhar Wadekar, AccelPath’s Chairman and Chief Executive Officer. “Professor Greengard’s expertise in developing fast and adaptive algorithms is a key component to enhancing efficiencies in digital whole slide imaging and 3D imaging. Professor Greengard will help enhance the Company’s proprietary 3D digital imaging technology, which has several medical applications. This 3D imaging technology was acquired as part of the Company’s acquisition of Technest Holdings in 2011. We will continue to exploit the value of this technology, as it relates to non-core applications, while pursuing our core business of digital telepathology and the applications for this technology in medicine.”

Source: AccelPath

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For Most Older Women with Early Stage Breast Cancer, Radiation after Lumpectomy Helps Prevent Need for Subsequent Mastectomy

Contrary to clinical recommendations, older women with early stage breast cancer may want to undergo radiation after lumpectomy to help ensure that they will not need a mastectomy in the future. That is the conclusion of a new study published early online in CANCER, a peer-reviewed journal of the American Cancer Society. The findings indicate that current thinking on the risks and benefits of radiation for early stage breast cancer in older women may be inaccurate.

National treatment guidelines state that older women with early stage breast cancer that has not spread to the lymph nodes and that is driven by estrogen in the body can be treated with lumpectomy and estrogen blockers without the need for radiation. Benjamin Smith, MD, of The University of Texas MD Anderson Cancer Center in Houston, and his colleagues evaluated information on 7,403 women aged 70 to 79 years who were treated with lumpectomy for such breast cancers between 1992 and 2002 and whose data were contained in the Surveillance, Epidemiology, and End Results-Medicare database, which links cancer registry information to a master file of Medicare enrollment. Approximately 88 percent of these women received radiation after their lumpectomy.

When the investigators looked to see what happened to these women after their breast cancer was treated, they found that within 10 years after treatment, 6.3 percent of women who did not get radiation eventually had their breast removed by mastectomy, compared with only 3.2 percent of women who received radiation. The reasons for mastectomy are not reported by this dataset, but the most likely reason for mastectomy in this patient group is recurrence of cancer in the breast. The researchers were also able to identify which women were more and less likely to benefit from radiation. Specifically, radiation did not seem to benefit women ages 75 to 79 years with non-high grade tumors (which contain cells that look only moderately abnormal under a microscope), suggesting that this group can probably skip radiation. Patients with high grade tumors (which contain very abnormal-looking cells), regardless of age, seemed to derive the most benefit from radiation.

“These data are important because they suggest that radiation is likely of some benefit to certain women where national guidelines say that radiation is not needed,” said Dr. Smith. “Our data could be helpful to women when they decide whether or not to undergo radiation,” he added.


Article: “Effectiveness of radiation for prevention of mastectomy in older breast cancer patients treated with conservative surgery.” Jeffrey M. Albert, I-Wen Pan, Ya-Chen Tina Shih, Jing Jiang, Thomas A. Buchholz, Sharon H. Giordano, and Benjamin D. Smith. CANCER; Published Online: August 13, 2012 (DOI: 10.1002/cncr.27457).

Author Contact: Laura Sussman of The University of Texas MD Anderson Cancer Center’s media relations office at lsussman@mdanderson.org, or +1 (713) 745-2457.

CANCER is a peer-reviewed publication of the American Cancer Society integrating scientific information from worldwide sources for all oncologic specialties. The objective of CANCER is to provide an interdisciplinary forum for the exchange of information among oncologic disciplines concerned with the etiology and course of human cancer. CANCER is published by Wiley and can be accessed online at http://wileyonlinelibrary.com/journal/cancer.

CANCER News Alert
NOTE: The information contained in this release is protected by copyright. Please include journal attribution in all coverage. A free abstract of this article will be available via the CANCER News Room upon online publication. For more information or to obtain a PDF of any study, please contact:
Jennifer Beal (UK) +44 (0) 1243 770633
Ashley Fontillas (US) 201-748-6035
sciencenewsroom@wiley.com

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Pathology backlog cleared

The Saskatoon Health Region has cleared a backlog of pathology tests after hundreds of patients waited for results because of a shortage of specialists.

"There are only two ways to get rid of backlog," said Joseph Blondeau, interim head of the health region's department of pathology and laboratory medicine.

"You either farm the work out to somebody else, which means you're paying to send the work out of province or out of the city, or you bring in extra resources."

The health region did both while recruiting several pathologists to work in the city.

For most of 2011, pathologists in the Saskatoon Health Region could not keep up with the volume of work coming their way. Tissue samples were sent out for testing, first to Regina and later to Toronto and the Mayo Clinic in Rochester, Minn.

In addition to the courier cost of sending specimens, the health region was paying between $300 and $700 for a sample to be read by a pathologist working for another agency.

In addition, several local pathologists worked overtime to clear more of the backlog, bumping up their salaries significantly.

Nine of the top wage earners in the health region in 2011-12 were pathologists. The highest-paid employee, Dr. Usharani Ganugapati, received $483,774. The provincial pay grid for pathologists ranges from $290,321 to $333,869 annually.

"When we were short of pathologists, there were some pathologists who for one reason or another had extra capacity and had decided that in an attempt to (reduce) the cases that were backlogged had worked extra hours. They gave up their evenings and weekends," said Blondeau.

Now, the pathology department is in rebuilding mode after years of tumult.

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Pathology backlog cleared

CSHL-led team introduces new method to closely model diseases caused by splicing defects

Public release date: 14-Aug-2012 [ | E-mail | Share ]

Contact: Peter Tarr tarr@cshl.edu 516-367-8455 Cold Spring Harbor Laboratory

Cold Spring Harbor, NY A team led by scientists at Cold Spring Harbor Laboratory (CSHL) has developed a new way of making animal models for a broad class of human genetic diseases those with pathology caused by errors in the splicing of RNA messages copied from genes. To date, about 6,000 such RNA "editing" errors have been found in various human illnesses, ranging from neurodegenerative disorders to cancer.

The new modeling approach can provide unique insights into how certain diseases progress and is likely to boost efforts to develop novel treatments. It was tested successfully by the CSHL team, led by Professor Adrian Krainer, Ph.D., in collaboration with scientists from Isis Pharmaceuticals, in mouse analogs of human spinal muscular atrophy (SMA), a motor-neuron disease that is the leading genetic cause of childhood mortality. The results are detailed in a study published today in Genes & Development.

The modeling method is called TSUNAMI (shorthand for targeting-splicing using negative ASOs to model illness). The study demonstrates it can be used in illnesses with pathology associated with the missplicing of pre-mRNAs unedited RNA molecules that bear the messages encoded in genes which provide instructions for cells to manufacture specific proteins.

Correcting splicing errors in SMA

A cellular machine called the spliceosome routinely snips non-essential bits called "introns" out of every pre-mRNA molecule that carries a copy of a gene's instructions. All that should remain after the spliceosome has done its work is a string of spliced-together "exons," the protein-encoding portions of the message. These edited mRNA messages are subsequently read by ribosomes, the cellular factories where proteins are synthesized.

In SMA and some other human illnesses, pathology can be traced to errors in the pre-mRNA editing process. In SMA, it is caused either by a severe mutation in a gene called SMN1 ("survival of motor neuron-1") or by that gene's complete absence in an affected individual's genetic material. The SMN protein normally encoded by the gene is essential for motor neuron development. Humans have a second, similar gene called SMN2, but it is a poor backup. Because of an error in the splicing of its pre-mRNA, the SMN2 gene, when expressed, typically produces only a fraction of the SMN protein needed by motor neurons. This is critical in the first stages of life when the body and muscles are still developing.

While the level of the "backup" gene's protein output varies in individuals with spinal muscular atrophy, resulting in pathology of varying intensity, Krainer -- a leading expert on splicing -- and his collaborators have succeeded in recent years in devising a method of getting SMN2 to produce therapeutic amounts of protein, enough to reverse pathology in both mild and severe mouse analogs of the disorder.

To achieve this they synthesized tiny snippets of RNA called ASOs (antisense oligonucleotides) and injected them into the cerebrospinal fluid of mice carrying a human SMN2 transgene (i.e., a gene not native to mice). This enabled them to get the therapeutic ASOs through the so-called blood-brain barrier, to reach cells throughout the central nervous system. ASOs are configured to attach at highly specific spots in pre-mRNAs, where, by design, they can inhibit activators or repressors of the splicing process. Krainer's team synthesized an ASO that corrected the SMN2 splicing error and gave rise to therapeutic amounts of SMN protein. Importantly, the ASO was shown to be stable in the body as well as persistent, the effects of a single injection lasting at least half a year in mice.

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CSHL-led team introduces new method to closely model diseases caused by splicing defects

Primary looks to strong earnings growth

Medical centres operator and pathology provider Primary Health Care has unveiled a near 50 per cent rise in full year profit and forecast stronger earnings in 2012/12.

Primary lifted its net profit for the year to June 30 by 49 per cent to $116.6 million, from $78.3 million in 2010/11.

Revenue climbed 5.3 per cent to $1.4 billion.

Primary impressed investors by forecasting a 20-25 per cent rise in earnings per share (EPS) in 2012/13.

Its EPS was 23.3 cents a share in 2011/12.

Primary also expects earnings before interest, tax, depreciation and amortisation to climb to $370-380 million in 2012/13, from $351.1 million in 2011/12.

"Primary is able to look forward to strong growth as a result of the underlying strength of the business, positive industry dynamics, and long-term increasing demand for healthcare services," Primary said in a statement on Wednesday.

Shares in the company were 34 cents, or 11 per cent, higher at $3.43 at 1038 AEST.

Primary, which operates 76 medical centres, said it expected consolidation in the industry to continue and would look for small bolt-on acquisitions.

Its medical centres, pathology and medical imaging divisions all lifted their earnings and revenue during 2011/12.

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Primary looks to strong earnings growth

New method to closely model diseases caused by splicing defects

ScienceDaily (Aug. 14, 2012) A team led by scientists at Cold Spring Harbor Laboratory (CSHL) has developed a new way of making animal models for a broad class of human genetic diseases -- those with pathology caused by errors in the splicing of RNA messages copied from genes. To date, about 6,000 such RNA "editing" errors have been found in various human illnesses, ranging from neurodegenerative disorders to cancer.

The new modeling approach can provide unique insights into how certain diseases progress and is likely to boost efforts to develop novel treatments. It was tested successfully by the CSHL team, led by Professor Adrian Krainer, Ph.D., in collaboration with scientists from Isis Pharmaceuticals, in mouse analogs of human spinal muscular atrophy (SMA), a motor-neuron disease that is the leading genetic cause of childhood mortality. The results are detailed in a study published August 15 in Genes & Development.

The modeling method is called TSUNAMI (shorthand for targeting-splicing using negative ASOs to model illness). The study demonstrates it can be used in illnesses with pathology associated with the missplicing of pre-mRNAs -- unedited RNA molecules that bear the messages encoded in genes which provide instructions for cells to manufacture specific proteins.

Correcting splicing errors in SMA

A cellular machine called the spliceosome routinely snips non-essential bits called "introns" out of every pre-mRNA molecule that carries a copy of a gene's instructions. All that should remain after the spliceosome has done its work is a string of spliced-together "exons," the protein-encoding portions of the message. These edited mRNA messages are subsequently read by ribosomes, the cellular factories where proteins are synthesized.

In SMA and some other human illnesses, pathology can be traced to errors in the pre-mRNA editing process. In SMA, it is caused either by a severe mutation in a gene called SMN1 ("survival of motor neuron-1") or by that gene's complete absence in an affected individual's genetic material. The SMN protein normally encoded by the gene is essential for motor neuron development. Humans have a second, similar gene called SMN2, but it is a poor backup. Because of an error in the splicing of its pre-mRNA, the SMN2 gene, when expressed, typically produces only a fraction of the SMN protein needed by motor neurons. This is critical in the first stages of life when the body and muscles are still developing.

While the level of the "backup" gene's protein output varies in individuals with spinal muscular atrophy, resulting in pathology of varying intensity, Krainer -- a leading expert on splicing -- and his collaborators have succeeded in recent years in devising a method of getting SMN2 to produce therapeutic amounts of protein, enough to reverse pathology in both mild and severe mouse analogs of the disorder.

To achieve this they synthesized tiny snippets of RNA called ASOs (antisense oligonucleotides) and injected them into the cerebrospinal fluid of mice carrying a human SMN2 transgene (i.e., a gene not native to mice). This enabled them to get the therapeutic ASOs through the so-called blood-brain barrier, to reach cells throughout the central nervous system. ASOs are configured to attach at highly specific spots in pre-mRNAs, where, by design, they can inhibit activators or repressors of the splicing process. Krainer's team synthesized an ASO that corrected the SMN2 splicing error and gave rise to therapeutic amounts of SMN protein. Importantly, the ASO was shown to be stable in the body as well as persistent, the effects of a single injection lasting at least half a year in mice.

TSUNAMI's 'negative ASOs': therapy in reverse

A version of this therapeutic ASO is now being tested in Phase 1 human trials. But even as the tests proceed, Krainer and colleagues have worked on getting the splice-correction method to work in reverse: using a "negative ASO" to cause or exacerbate disease pathology in neonatal mice, with the approach they call TSUNAMI.

Read more:
New method to closely model diseases caused by splicing defects

Zoom tool stitches together thousands of nanoscopic cell images

By Liat Clark Courtesy of WIRED.CO.UK

07 August 12
Image1
A team of molecular biologists has published a paper revealing how its "virtual nanoscopy" method creates detailed, high resolution images of cellular structures by "stitching" together thousands of electron microscope photos.

Electron microscopes can magnify an image by up to 10 million times using beams of electrons. However, the tool can only be used to either capture a single, detailed image of part of a cell or, at a lower resolution, a less-detailed overview of the cell. There was no way, until now, to relate the one to the other and give a contextual and detailed overview of the entire cell structure at once.

In the paper Virtual nanoscopy: Generation of ultra-large high resolution electron microscopy maps, Leiden University Medical Centre molecular biologist Frank Faas and his team explain how they have enabled "unbiased high resolution data access while maintaining the lower resolution overview of the cellular context". It's a little like Google Earth's zoom tool, but for cell biologists.

The team joined together 26,434 detailed photos of a 1.5 millimetre-long zebrafish embryo taken using an FEI Eagle CCD camera linked up to an electron microscope. The total data of all the photos that made up the full embryo picture amounted to 281 gigapixels, with a resolution of 16 million pixels per inch -- to visualise just what incredible detail that resolution offers, compare that pixel count to the 220 pixel-per-inch resolution boasted by Apple's new Retina display Macbook Pro. Seems pretty paltry now, doesn't it. The final image slide was created using a program specifically developed for the task -- MyStitch extracts metadata from transmission electron microscopy (TEM) images and uses this to pair the images, noting any overlaps and adjusting the joins appropriately. Images have been stitched together in a similar manner in the past, using tools such as Adobe Photoshop, but only on a much smaller scale. Generating a full image of a cellular structure calls for huge amounts of time-consuming data collection, so the team achieved its feat by automating some of the processes, from the data-stitching down to the photo-taking.

The final image has been published at the upgraded JCB DataViewer site where interested parties can play around with the zoom function and take in not only the embryo, but images of mouse glomeruli, human dendritic cells and mouse embryonic fibroblasts.

Medical professionals often zoom in on the part of a cell they believe to be the main area of focus, or the root of a problem. By presenting a comprehensive image, the new "virtual nanoscopy" method ensures they get the whole picture and do not miss or inadvertently skim over important elements.

"Virtual nanoscopy does not suffer from sparse or possibly biased selection of regions of interest for high resolution imaging," states the paper. "[It] provides an objective and representative approach to record, communicate, and share data of large areas of biological specimens at nanometre resolution."

And in a related story from newswise (Rockefeller University Press):

Virtual Nanoscopy: Like “Google Earth” for Cell Biologists

Just as users of Google Earth can zoom in from space to a view of their own backyard, researchers can now navigate biological tissues from a whole embryo down to its subcellular structures thanks to recent advances in electron microscopy and image processing, as described inThe Journal of Cell Biology (JCB). An upgrade to the JCB DataViewer (http://jcb-dataviewer.rupress.org), JCB’s browser-based image presentation tool, now also makes these data publicly accessible for exploration and discovery.

Since the early days of cell biology, electron microscopy has revealed cellular structures in exquisite detail. The technique has always been limited, however, by the fact that it can only capture a tiny portion of the cell in a single image at high resolution, making it difficult for researchers to relate the structures they see to the cell as a whole, let alone to the tissue or organ in which the cell is located. Viewing samples at lower resolution, on the other hand, can reveal the larger picture of a cell or tissue, but researchers then lose the benefit of seeing fine details.

A team of scientists from Leiden University Medical Center in the Netherlands has addressed this problem by developing new tools for stitching together thousands of electron microscopy images into single, high-resolution images of biological tissues—a “Google Earth” for cell biologists—which can be explored using the newly enhanced JCB DataViewer.

Faas et al. describe their recent advances to a technique called “virtual nanoscopy” in the August 6th issue of JCB. The researchers were able to stitch together over 26,000 individual images to generate an almost complete electron micrograph of a zebrafish embryo encompassing 281 gigapixels in total at a resolution of 16 million pixels per inch. Using the JCB DataViewer, anyone can navigate the zebrafish image from the level of the whole, 1.5 millimeter-long embryo down to subcellular structures.

The ability to integrate information across cells and tissues will provide researchers with exceptional opportunities for future discoveries. But the image’s large size and complexity meant that providing access to Faas et al.’s data necessitated a major upgrade to the JCB DataViewer, a browser-based image hosting platform originally launched in 2008 to promote the sharing of original data associated with JCB publications.

“If you can image it, you should be able to publish it,” says JCB Executive Editor Liz Williams. As a journal, “JCB remains committed to developing cutting-edge tools for the presentation of the data that drive progress in the field of cell biology.”
# # #
About The Journal of Cell Biology 
Founded in 1955, The Journal of Cell Biology (JCB) is published by The Rockefeller University Press. All editorial decisions on manuscripts submitted are made by active scientists in conjunction with our in-house scientific editors. JCB content is posted to PubMed Central, where it is available to the public for free six months after publication. Authors retain copyright of their published works and third parties may reuse the content for non-commercial purposes under a creative commons license. For more information, please visit http://www.jcb.org.

About the JCB DataViewer
The JCB DataViewer is an image hosting and presentation platform for original image data associated with articles published in JCB. Developed in a collaboration between Glencoe Software, Inc. (www.glencoesoftware.com) and the Rockefeller University Press (www.rupress.org), the JCB DataViewer was the first browser-based viewer for multidimensional microscopy image data. It is based on open source software built by the Open Microscopy Environment (OME; http://openmicroscopy.org).

Faas, F.G.A., et al. 2012. J. Cell Biol. doi:10.1083/jcb.201201140
Williams, E.H., et al. 2012. J. Cell Biol. doi:10.1083/jcb.201207117

 

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