Evolution in Rare Oncology: Rethinking ‘Common’ Cancers – Drug Discovery & Development

There are at least 7,000 diagnosed rare diseases, affecting 30 million people in the U.S. These figures from Global Genes, a rare disease advocacy organization, are likely an underestimate given that new rare diseases continue to be discovered.

Some clinical syndromes currently lack a clear diagnosis at all because they have never been seen before. The unmet need is staggering; the mean time to diagnosis of a rare disease is 4.8 years from symptom onset, and patients will see an average of seven physicians prior to receiving an accurate diagnosis. Furthermore, the Kakkis EveryLife Foundation found that about 95 percent of rare diseases have no FDA-approved treatment leaving physicians with few options beyond supportive and/or symptomatic care.

Fortunately, progress in the overall care of patients with a rare disease is strengthened by a uniquely strong community of patients, caregivers, and advocacy groups.

While a rare disease was defined in the U.S. by the Orphan Drug Act as comprising fewer than 200,000 patients, by that standard most cancers would be considered rare.

But in oncology, rare is generally held to a different standard: an incidence as low as less than six per 100,000, according to RARECARE. Furthermore, a 2017 study from the American Cancer Society uncovered that patients with rare tumors make up about 20 percent of the overall cancer patient population.

Unfortunately, like rare disease in general, patients with rare cancers suffer from delays in diagnosis as well as a lack of effective treatments, robust clinical trial data, and evidence-based practice guidelines. In oncology, this means demonstrably poorer outcomes compared to more common cancers, putting patients with rare cancers at a disadvantage. Indeed, a recent analysis of U.S. epidemiological data confirmed that five-year relative survival rates for rare cancers continue to lag behind those of more common ones. Increased awareness about rare cancers combined with new strategies for developing strong evidence-backed treatments and specialist partnerships will help the outcomes of rare cancers catch up with their more common cousins.

Prior to the advent of molecular genetics, the understanding of and approach to treating cancer was fairly blunt. Tumors were characterized primarily by the tumors site (breast, pancreas, lung, etc.) and histology (cell type). With this understanding, surgery was the ultimate targeted therapy, while non-specific, harsh chemotherapeutic approaches and other invasive procedures were customized on a tumor-by-tumor basis. Over time, molecular markers unique to specific tumor types started to be identified and utilized for diagnostic purposes as well as to inform treatment strategies.

Finally, the first treatment rationally designed to specifically target the unique genetic defect of a cancer was created Gleevec (imatinib) was approved by the FDA for use in patients with chronic myelogenous leukemia (CML) in 2001. This breakthrough transformed CML from a death sentence to a chronic disease for many patients and heralded a turning point in the era of targeted therapy.

The success of Gleevec and its positive impact on the lives of patients validated a targeted approach to cancer and was a catalyst for even more enthusiasm about deciphering its genetic underpinnings, revealing that all tumors have unique molecular signatures. Common tumors that have long been characterized by virtue of their location and histology. They can now be broken down based on their molecular profile, giving rise to multiple rare subgroups. For example, one subtype of non-small-cell lung cancer (NSCLC) characterized by a particular tumor-promoting chromosomal rearrangement and known as ALK-positive NSCLC, is quite rare (less than 5 to 7 percent of all NSCLC). This kind of molecular characterization has had profound implications for drug development, since those unique tumor drivers can be specifically targeted. Indeed, there are now four FDA-approved drugs for ALK positive NSCLC.

Subdividing tumors based on molecular profile supports an understanding of oncology as an even more complex and heterogeneous disease than once thought. Rare subgroups have been identified, not only of NSCLC, but of other common tumors like breast cancer and melanoma, as well. As cancers are further defined based on molecular profiles, the number of rare cancers rise. Why does this matter? Clearly, these tumor-promoting molecular drivers can be capitalized upon for further, more targeted drug development.

In addition, some of these drivers are not unique to just one tumor type. For example, mutations in the gene BRAF have been found to be important in subgroups of melanoma, NSCLC, thyroid cancer, and others. Clinical trials are being increasingly designed to enroll patients with tumors characterized by molecular marker, regardless of the organ affected. This has led to a newer research approach-called a basket trial, in which patients tumors are first screened by DNA sequencing. Based on the genetic background of the tumor and its identified mutations, one of many drug candidates is chosen to be tested in that patient. Not only is this design flexible and efficient, it also addresses a key challenge in studying rare cancers, namely, the limited number of patients available for clinical trials. Several basket trials are well underway.

The shift in how we think about and characterize cancer is already changing the way new drugs are developed, how theyre tested, and how they are integrated into clinical practice. It also supports the endeavor of achieving a truly personalized form of precision medicine. Furthermore, multidisciplinary team-based approaches are increasingly important; rare cancers typically require a very high-level of specialization and collaboration primarily found at expert centers. As more rare cancers are identified, both new entities and genetically-defined rare subtypes of more common cancers, the way healthcare professionals partner together to care for a patient throughout the journey will likely evolve as well. There are likely additional paradigm shifts in store.

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Evangelicals Who Link Evolution and Racism Forget Christianity Was Used to Defend Slavery and Segregation – Patheos (blog)

David Whitney of the Institute on the Constitution believes he knows whyRichard Collins III was murdered on the University of Marylands campus in May:

Evolution is also the basis of racism, [and] many assert that racism played a role in the motivation for this murder, Whitney said. You see,evolution is essentially racist. Sowhere did Sean Urbanski learn racism? He learned it in his classes on evolutionat the local public high school that his parents sent him to and his parents funded that school by the payment of their property taxes.

This statement should be surprising, but it is not. Prominent creationist Ken Ham is well known for arguing that evolution is the root of racism, and that the solution to racism is belief in biblical creationism.

Shortly before coming upon Whitneys words, I read an Atlantic article taking on a series of myths about Robert E. Lee. I found the articles discussion of Lees Christianity an interesting counterpoint to Whitneys claims:

The war was not about slavery, Lee insisted later, but if it was about slavery, it was only out of Christian devotion that white southerners fought to keep blacks enslaved. Lee told aNew York Heraldreporter, in the midst of arguing in favor of somehow removing blacks from the South (disposed of, in his words), that unless some humane course is adopted, based on wisdom and Christian principles you do a gross wrong and injustice to the whole negro race in setting them free. And it is only this consideration that has led the wisdom, intelligence and Christianity of the South to support and defend the institution up to this time.

Lee had beaten or ordered his own slaves to be beaten for the crime of wanting to be free, he fought for the preservation of slavery, his army kidnapped free blacks at gunpoint and made them unfreebut all of this, he insisted, had occurred only because of the great Christian love the South held for blacks.

Lee claimed that slavery was Christianand his argument was a common one for his time. Whites inthe antebellum South used scripture to back up their defense of slaveryand this wasnt just limited to verses telling slaves to obey their masters. Southern whites argued that the black race was subject to the curse of Ham. They based this claimon a passage from Genesis chapter 9:

20Then Noah beganfarming and planted a vineyard.21He drank of the wine andbecame drunk, and uncovered himself inside his tent.22Ham, the father of Canaan,saw the nakedness of his father, and told his two brothers outside.23But Shem and Japheth took a garment and laid it upon both their shoulders and walked backward and covered the nakedness of their father; and their faces wereturned away, so that they did not see their fathers nakedness.24When Noah awoke from his wine, he knew what his youngest son had done to him.25So he said,

Cursed be Canaan; A servant of servants He shall be to his brothers.

26He also said,

Blessed be theLord, The God of Shem; And let Canaan behis servant. 27May God enlarge Japheth, And let him dwell in the tents of Shem; And let Canaan behis servant.

Southern whites argued that as a result of this incident the descendants of Ham were condemned to serve the descendants of Shem and Japheth, forever. The descendants of Ham, they argued, werethe black race. The descendants of Japheth were the Jews, and the descendants of Shem were the Europeans. Slavery, then, was not only passively biblical but actually explicitly commanded by God.

I should note that this belief predated even the idea of evolution. In other words, the curse of Hamwas not based on evolutionary ideas about race.

Nor did the use of the Bible to defend racialdiscrimination or racial segregation end there. During the civil rights movement in the 1950s and 1960s, many white southern pastors preached that God had commanded the separation of the races. These individuals tended to argue that different races should not intermarry, andthat God had different purposes for different races. And here, again, their concept of races was rooted inthe Bible,notevolutionary ideas.

Have a look at this excerpt from a 1960 radio address by Bob Jones:

What does God teach about the races of the world? If you will go to the seventeenth chapter of the Acts of the Apostles, you will find where Paul preached a special sermon on Mars Hill.

Paul tells us in his sermon on Mars Hill, God that made the world and all things therein, seeing that he is Lord of heaven and earth, dwelleth not in temples made with hands. Now, the statue of the Grecian goddess, Athena, was in the Parthenon; and Paul said that God did dwell in buildings made with hands. Neither is worshipped with mens hands, as though he needed any thing, seeing he giveth to all life, and breath, and all things.

Now, noticethis is an important versethe twenty-sixth verse of the seventeenth chapter of the Acts of the Apostles, And hath made of one blood all nations of men for to dwell on all the face of the earth (in some of the best original manuscripts, the word blood is not there, but it is not important anyhow, because the thoughts are the same). And hath made of one blood all nations of men for to dwell on all the face of the earth. . . . But do not stop there, . . . and hath determined the times before appointed, and the bounds of their habitation. Now, what does that say? That says that God Almighty fixed the bounds of their habitation. That is as clear as anything that was ever said.

Pastors like Bob Jones explicitlypreachedthat God had createdseparate races, giving each its own boundary and roleand they used the Bible to back up their claims. Trumpetingthese passages, Jonesvehemently opposed both interracial marriage and school desegregation.

Here, then, is the central problem faced byevangelicals like Whitney: If racism stemmed from evolution, as they claim,we should not see Christians base racist ideas on the Bible, eitherin recent generations or in thedecades before the birth of evolutionary science. And yet, we see just that. If evangelicalsaccept that racism is part of the human condition, and understand that a variety of ideasfrom evolution to Christianityhave been used to justify racism,they grow closer to reality.

Of course, they also lose a favorite anti-evolution talking point.

As an aside, both young earth creationism and evolution holdsthat humans are descended from agroup of early ancestors. Creationist Ken Ham is fond of using the one blood terminology quoted by Jones to argue that young earth creationism is anti-racist. To the extent that Hamis able to persuade his followers to reject racist ideas, great! Im just not sure Hams were all descended from the same people rhetoric is as original (or as different from that ofevolutionary scientists) as he thinks.

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Evangelicals Who Link Evolution and Racism Forget Christianity Was Used to Defend Slavery and Segregation - Patheos (blog)

Katy Perry’s Musical Evolution in 5 Acts – Radio.com Music and Entertainment News

We trace Perry's evolution from Christian beginnings to "Swish Swish." June 6, 2017 10:00 AM

By Hayden Wright

For nine years, Katy Perry has been one of pop musics most powerful forces but she was far from an overnight success. The Roar singer toiled on the Christian pop circuit for years before transitioning to the mainstreamand heralding the dawn of one of pop musics brightest careers. Perrys fifth studio album,Witness drops Friday but lets take a look at the chapters that brought her to prominence.

Christian Pop Beginnings: Katy Hudson, 2001.

For most artists, a self-titled debut album sets the blueprint for everything that comes next. Think ofMadonna orHarry Styles. That conventional wisdom couldnt be further from the truth for Katy Perrys first full-length album, a contemporary Christian record under her legal name, Katy Hudson.Katy Hudsonruns the gamut from the overtly devotional (Faith Wont Fail) to the convincingly secular (Naturally) but it was hardly a launchpad for superstardom. Instead, Perrys Christian roots (and pastor parents) supply levels of irony, conviction, and context for all her future projects.

A Subversive Debut:One of the Boys, 2008.

In our desensitized times, its easy to forget how bold and shocking the declaration I kissed a girl (and I liked it) sounded on FM radio.Well never look at cherry Chapstick the same way again.One of the Boys was a reaction againstKaty Hudson as much as it was a declaration of intent: Perrys cheeky power pop delights on tracks like Hot n Cold while Thinking of You showcased her range. On the record, Perry left her wholesome image behind and asserted herself as a burgeoning pop powerhouse.

The Mainstream Juggernaut:Teenage Dream, 2010.

Teenage Dream was the moment everything went Technicolor for Katy Perry. Single after single hit number one on theBillboard Hot 100 chart and she earned a GRAMMY nomination for Album of the Year. Commercial performance aside,Teenage Dream is a diverse yet cohesive collection of top-drawer pop confections. Firework set the gold standard for empowerment anthems; California Gurls hit the airwaves with irresistible bubblegum force; Last Friday Night spawned Perrys most delightful video to date (and how about that sax solo?). The albums lower-key moments Teenage Dream and The One That Got Away accessed something yearning and relatable in legions of pop listeners. An album with one of these tracks would be a big dealTeenage Dream had all five and more.

Breaking the Mold: Prism, 2013.

After the explosion ofTeenage Dream, Perry waited a few years to follow it up.Prism feels like an album tailor-made for Katy Perry fans, like Lady GagasArtpop or RihannasAnti. Though it contained big, broad hits like Roar and Dark Horse, most ofPrism plays to Perrys base of KatyCats. It marked a major key change in the singers stage presence, beginning with thePrismatic World Tour and culminating at the 2015 Super Bowl Halftime Show. Perrys supersized production values incorporated new elements of nostalgia like Missy Elliotts show-stealing appearance.

Next Up:Witness, 2017.

Perrys fifth studio album will always have an asterisk next to itits technically her fourth, given how far shes come sinceKaty Hudson. Her purposeful pop promises a new dimension to the artistry weve come to expect, informed by the 2016 presidential election and subsequent resistance efforts. On Bon Appetit and Swish Swish, its clear thatWitness wont be a joyless political album but a fresh restatement of the Katy Perry brand.

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Katy Perry's Musical Evolution in 5 Acts - Radio.com Music and Entertainment News

Photo Series Shows Kids Enjoying Childhood Without Technology – Collective Evolution

Do you remember a tech-free childhood? For the most part, I do, with the exception of television. I am thankful I didnt grow up during the era of iPads and iPhones, and everything that comes with them easy access to streamed movies and TV shows,YouTube, games, andendless social media feeds. I didnt have adevice to distract meat the fancy restaurant. When I was bored, my parents told me to read, to go outside, to play with my sister.

I was a nanny for a long time as a young adult, during the emergence of iPhones, iPads, and the social media hype. I can tell youthat I saw firsthand its effects on childrens desire to go outside and play, to interact with their siblings, and to fill the void of boredom with books, board games, or even a tree outsiderather than a screen.

While there is certainly a lot of opinions on todays technology and our children, and I respect parents choices for their children, and I do believe iPhones, iPads, social media, and more are more than just unavoidable, but also beneficial in many circumstances. However, I alsobelieve in the simplicity of life; in the power of getting dirty in nature; in using your creativity to make up games with your sibling; in getting lost in a book.

It seems New Zealand photographer and mother of four Niki Boondoes too. In a series called Childhood in the Raw, she documented her childrens everyday lives, showcasing the joys of a tech-free world.

This project came into being with our decision to educate our children alternatively, at home, Boon told HuffPost.

As one might assume, there have been a lot of questions and criticism from friends, family, and strangers regarding the familys lifestyle. Boon, her husband, and their children a 12-year-old daughter and three sons, ages 7, 9, and 13 live in a rural environment without modernelectronic devices like TV and smartphones.

In the beginning, the photos served as a visual document, to record things that the children were doing in a day, to reassure both others and ourselves that there was learning taking place, Boon said.

But as time went on, I became frustrated that the pictures werent really telling the story well enough for me. It just wasnt with enough depth, she continued.

So I spent many hours and late nights trying to teach myself how to take better pictures, ones that depicted what I was seeing in front of me, and tell the story the way I saw it and things just evolved from there.

Boons tech-free childhood, in which she grew up on a farm with extended family, sparked her desire to give her children a similar experience.

Like all parents we would love our children to be strong in who they are, confident, free thinkers, proactive, independent, resilient, empathetic and happy, said Boon. I hope that, living with the land that we have, that they also gain a healthy respect for the earth, and for the animals and plants that live with us on it.

Boon hopes, if anything can be taken away from the series, it is that her children have the opportunity to look back on it and smile.

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Photo Series Shows Kids Enjoying Childhood Without Technology - Collective Evolution

CrossCode Developer Reflects At The RPG’s Six Years Of Evolution – Siliconera

By Joey Chiu . June 6, 2017 . 1:00pm

Radical Fish Gamess CrossCode feels like the type of indie game that you wish there was more of out there. As Lea, a stranger in a strange land who just lost her voice as well as her memories, log into the MMO-game-within-the-indie-game CrossWorlds to solve the mystery of her amnesia. Take an energy-ball-shooting mechanic like the egg-fling from Yoshis Island, add it to a NieR: Automata-like super-slick combat system, sprinkle in Zelda-style puzzle-solving, and mix it well in a top-down world with vibrant graphics and music that evoke 16-bit bliss. Thats CrossCode.

Siliconera met with Felix Klein of Radical Fish Games during BitSummit and got to talk about CrossCodes beginnings, its eclectic influences, and the development teams own continuing journey.

Could you please give a short introduction?

Felix Klein, Co-founder: I am Felix, also known as Lachsen, of Radical Fish Games. Were a bunch of developers from Germany, and we worked on CrossCode since the end of 2011 essentially. We are finally in Japan, presenting the game at BitSummit.

What was the origin of CrossCode?

CrossCode began long before its own development in 2011. We were all working with RPGMaker 2000, created our first prototype. It was top-down, more like a puzzle game where you could throw balls that were bouncing on walls. It quickly turned out that RPGMaker 2000s not really up to the task, there were lots of limitations, and we dropped that eventually.

I picked it up again sometime later, and I tried to develop it as a Nintendo DS homebrew title. That worked much better, but C++ is such a pain to work with, and I lost motivation. But then, HTML5 came around, and I really got in love with HTML5 for some strange reason.

A lot of people hate JavaScript, I love JavaScript, I dunno why, it just speaks to me. So I decided to try it again, this time in HTML5, and it worked. So we started with ImpactJS, thats an HTML5 engine, modified the engine, a lot of people joined the team, so we are now a team of 12 to 14 people, with 2 people working full-time, and now over this year we have created a pretty decent game. Its not finished yet, but we are getting pretty close to it.

What were some of the driving inspirations behind CrossCode?

A lot of different inspirations. You could say CrossCode is taking Yoshis Island, then you make it top-down instead of side-view, and then you turn it into an RPG. Thats more or less CrossCode. We have a big love for Terranigma, a Super Nintendo game that was actually released in Germany and not in the United States.

Also Devil May Cry, Kingdom Hearts, a little bit of the combat system is inspired by that. Xenoblade Chronicles is a big inspiration because we like the mix of JRPG with more open-world scenarios and free-roaming with quests, and a little bit of Valkyrie Profile because of the animations.

That is a wonderful myriad of influences and inspirations. What then is perhaps one singular element that you would have separate CrossCode from the rest of the indie RPG pack?

Thats a difficult one. Theres several things in CrossCode that are nice to point out as far as the abstract goes, but what I like to say is that its a nice mix of Zelda-type action-adventure with an action RPG. You actually dont have this too often.

On the other hand, you have puzzle-heavy action adventures, or combat-heavy action RPGs. We actually try to mix the whole thing, and we think it works really nice, because you actually have battles that have very puzzle-heavy mechanics. You actually use the puzzle mechanics in combat, and on the other hand you have puzzles that are really fast paced, and actually also need some shooting, it mixes those two things and is actually surprisingly unique. You dont see it too often.

Have there been any elements of the game that were either dropped or changed over the years of development?

There have been a few featured ideas that we had early on that we also dropped pretty early on in the game. There have been some features that we thought we would like to add them, but we werent 100% sure it would work out. But, in the end, they all actually worked out, stuff like party members.

We have not been 100% sure if we would manage to create party members, but it worked well enough so we added them. Theyre not extremely relevant for gameplay, theyre more for the atmosphere, but its actually pretty fun to have party members running around. In CrossCode, youre playing a network game inside a game, so not having parties would be a little bit weird. You dont play an MMO by yourself usually.

So that worked out, but otherwise we actually have a very fixed set of features. We dont adapt things too much. We did a lot of experiments in the beginning, like the technical demo, released that, got some feedback. Then we released the first demo, the feature set was actually surprisingly stable. We do small stuff like come up with some mini-games, and other small quest ideas which are based on the mechanics that we already implemented for other things. We try to reuse mechanics to use them in a different way to get some new content, but we dont invent entirely new mechanics. We try to avoid that.

This isnt your first public showing of CrossCod?

No, not entirely. We had a two year break not showing much. When we did the Indiegogo campaign, we went to SXSW, and presented it. We havent been well-known so people probably missed it back then. But, yeah, we have been there, then presented at some kind of Indie Booth, it wasnt Indie Mega Booth, it was something else.

And then a few months later, after the Indiegogo campaign, we were at Gamescom in Germany. We actually had 2 booths, one in the consumer area, one in the press area, it was- Oh my Gosh- it was so exhausting. 5 days, from 10 to 20 oclock (10am to 8pm on a 12-hour clock), 5 days in a row We kinda survived that, but then wed had enough events for some time.

But now since were getting closer to release, now we plan to show up in some more events again, show the game a bit more, and when we got the invitation to go to Japan, we definitely wanted to do that. I have been here before, actually the first time I worked on HTML5 games was on an internship here in Japan. It was in Tokyo, they actually gave us a trust to do some kinda Farmville clone based on HTML5 instead of Flash.

We never really finished that, but it was more like an experiment. But thats when I realized that HTML5 was ready to work on games. Right when I came back to Germany, a few months later, I started CrossCode, and now 6 years later, Im back again showing CrossCode in Japan. This is awesome.

Do you have any closing thoughts for fans and players looking forward to CrossCodes release?

I just really hope that we can surprise you people with some really interesting twists in the story. I hope that the story will be received well in the end, that we can surprise some of our players.

Video game stories from other sites on the web. These links leave Siliconera.

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CrossCode Developer Reflects At The RPG's Six Years Of Evolution - Siliconera

New study identifies energy metabolism adaptations linked to soft shell turtle evolution – Phys.Org

June 6, 2017

Around 250 million years ago, terrestrial-bound turtles began to explore the aquatic environments, and with it, a profound, new ability first developed.

Breathable skin, made possible by the loss of their hard shells. Losing the hard shell is a feature that evolved independently in three turtle lineages during the Late Cretaceous, providing greater swimming speed and maneuverability.

And the loss of hard shells at different evolutionary branch points resulted in adaptive changes because of changes in respiration. They could maintain aerobic respiration for longer periods of time, and sustain deeper dives.

Now, scientists Tibisay Escalona, and Agostinho Antunes from the CIIMAR research institute in Porto, Portugal, and Cameron Weadick from Sussex University in Brighton, United Kingdom have traced the origin of these adaptations to different genes that are part of the mitochondrial respiratory complex in soft shelled turtles.

"It's reasonable to hypothesize that turtle mitochondrial DNA-encoded proteins may have undergone adaptive evolutionary changes associated with the loss of shell scutes and the invasion of highly aquatic eco-physiological niches," said the authors.

Mitochondria, which are passed along solely from mothers to offspring, are known as the powerhouses of the cell, responsible for aerobic respiration and 95 percent of the cell's energy currency in the form of ATP.

The research team investigated patterns of evolution in the mitochondrial DNA (mtDNA) protein coding genes across 53 Cryptodiran turtle species (representing a total of 10 families), testing for adaptive or divergent patterns of mtDNA evolution associated with the evolution of soft-shells.

The researchers identified positively selected sites that occurred in the mitochondrial-encoded proteins of the oxidative phosphorylation system byusing various models and mapped these mutations onto the three-dimensional structures of the proteins, and predicted the severity of these structural changes on respiratory function.

They've shown that subtle amino acid changes can have large functional effects and saw the largest changes effecting complex one, the first and the largest domain of the OXPHOS pathway. Complex I, is responsible for an estimated 40 percent of the proton current that drives ATP synthase.

"Our data supports the notion that the adoption of highly aquatic lifestyles in soft-shelled turtles was associated with altered patterns of selection on mitochondrial function. Our analyses thus revealed that positive selection strongly affected mtDNA evolution along two (Trionychidae and Carettochelyidae) of the three lineages associated with the evolution of soft-shells, and that positive selection targeted multiple mtDNA genes in both cases," said the authors.

However, they did not see this adaptation in leatherback sea turtles. Why not? "This suggests that the evolution of a soft-shell in leatherbacks may have been linked to thermoregulation, not respiration, enabling the species to regulate heat gain and loss," said the authors.

Their findings highlight the valuable role of mitochondrial in the larger context of mitochondrial protein biochemistry, human diseases and turtle ecology.

Explore further: How to protect cells from selfish mitochondrial DNA

More information: Molecular Biology And Evolution (2017). DOI: 10.1093/molbev/msx167

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New study identifies energy metabolism adaptations linked to soft shell turtle evolution - Phys.Org

Theocrat Blames Evolution for Racist Murder – Patheos (blog)

A couple weeks ago a University of Maryland student who was a hardcore racist murdered a black student from another school. David Whitney from the Christian Reconstructionist group Institute on the Constitution naturally blames it all on the teaching of evolution.

As in all public schools, evolution is inculcated and it teaches that there is no Creator God and that everything in the universe came into existence by chance and mistake, accident and is wholly without purpose and without meaning of any kind, Whitney preached. He was taught that mankind, including himself, was nothing more than a long compilation of mistakes and mutations and chance occurrences.

We should not be surprised then if Sean, with that background and education, concluded that life is meaningless, without any purpose at all, he continued. Or, if there is a purpose in life, it would be to advance and further the process of evolution; a process in which the strong destroy the weak and indeed, ultimately, that is the purpose for existence. Survival of the fittest therefore has some rather dastardly consequences which we see in the murder committed by a secular humanist of a Christian young man.

Evolution is also the basis of racism, [and] many assert that racism played a role in the motivation for this murder, Whitney said. You see, evolution is essentially racist. So where did Sean Urbanski learn racism? He learned it in his classes on evolution at the local public high school that his parents sent him to and his parents funded that school by the payment of their property taxes.

Riiiiight. Thats why every other modern nation in the world, where the teaching of evolution is not the least bit controversial like it is here, has far lower rates of violent crime, particularly murder. And obviously all of those religious wars that killed millions of people before Darwin wrote On the Origin of Species were still the fault of evolution somehow. Cause and effect seems to be a very elusive concept to the wingnut mind. I mean, the murder rate among evolutionary biologists must be huge, amirite?

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Theocrat Blames Evolution for Racist Murder - Patheos (blog)

Solution: ‘Darwinian Evolution Explains Lamarckism’ – Quanta Magazine

Our May Insights puzzle was inspired by recent discoveries of some rare, intriguing patterns of inheritance that hark back to Jean-Baptiste Lamarcks theory of evolution and its emphasis on the inheritance of acquired characteristics. Elementary textbooks often present Lamarcks theory as a failed 19th-century rival to Charles Darwins theory of evolution by natural selection. But reality, as usual, is far more complicated. There is indeed a great deal of evidence that most acquired characteristics are not inherited, but as the new findings have shown, this proscription is not absolute. The famous verkalix study, for example, showed that men who were exposed to a poor food supply between the ages of 9 and 12 were found, two generations later, to have conferred a measurably lower risk of diabetes and cardiovascular death to their grandchildren. Adaptive Lamarckian inheritance does seem to be possible, and epigenetic mechanisms for it have been found. These mechanisms modify DNA in ways that differ from those of heredity.

But at a deeper level this kind of inheritance can be naturally selected for in the traditional Darwinian way, provided certain environmental conditions are satisfied. So Darwinian natural selection remains the fundamental basis of evolution and can produce Lamarckian inheritance: The theories are not rivals after all! Using simple models, our puzzles show how natural selection can sustain Lamarckian inheritance. The requirement is that environmental conditions, such as famines, follow patterns that persist across several generations and are repeated over long stretches of evolutionary time.

Imagine there exists an animal that has a new generation every year. Every normal individual has an average of 1.6 surviving offspring in a normal year, which can be defined as the animals fitness (lets call itf), after which the animal dies. During a famine year,ffalls to 1.3.Now suppose there are a bunch of smaller individuals whosefvalues are 1.5 in normal years but 1.35 in famine years: Their smaller food requirement helps them survive famines better. How long would a famine have to last for the small individuals to do better than normal ones? How many famine years before small individuals make up 90 percent of the population?

The basic mathematics of natural selection is simple. For every group, you just multiply the fitness numbers across multiple generations. You then find the ratio between the numbers you obtain for the different groups. This gives you their relative populations, assuming that the initial numbers were the same. (Note that these numbers dont signify the actual populations of each group, but they indicate their relative success. If f is larger than 1, then the product may grow extremely large after many generations. In the real world, there are many checks on the population of a species, so at equilibrium, the population is actually stable. What does change are the relative ratios between the populations of the different groups, which are accurately reflected in the above calculation.)

For Question 1, assuming we start from a normal year, we have to find a positive integer n such that 1.5 x 1.35n > 1.6 x 1.3n. You can do this analytically using logarithms or by setting up a spreadsheet and reading off the values. After two years of famine, the smaller individuals already have a population over 50 percent. (If you want to bookend the famine with normal years on either side, then it requires four years of famine for the small individuals to be ahead of the normal ones a year after the famine is over.)

As Ty Rex noted, for smalls to make up more than 90 percent of the population, the number of famine years needs to be greater than [log(9) + log(1.6/1.5)]/log(1.35/1.3) ~ 59.9. So, 60 famine years are needed for smalls to make up 90 percent of the population.

Suppose there exists an initially normal mutant group of individuals called Epi2s, whose germ cells are affected by a year of famine in such a way that their progeny changes to the small type for two generations before they revert back to normal in the third generation, through epigenetic mechanisms. Consider a 13-year period that starts and ends with normal years but has a one-year famine, two two-year famines and a three-year famine in between. Which of the three groups (normals, smalls, Epi2s) will be most successful? Are there famine patterns in which Epi2s overwhelm the other two groups over the very long term?

As a couple of commenters noted, there is an ambiguity here: What happens when Epi2s that have changed to the small type encounter a year of famine? Is their status reset and do they continue to be smalls for another two years, or do they continue on their original timetable and revert to normals two years after the original famine year? Most commenters assumed the former. I had the latter in mind, because otherwise the Epi2s behave very much like smalls in extended famines. In any case, the choice of the assumption does not change the answer to this question. As Ty Rex noted, if we start with equal populations, the ratios between the normals, smalls and Epi2s become 85.5 to 83.8 to 86.1, assuming Epi2s reset, so the Epi2s do best by a small margin. If there are no resets, then Epi2s do even better, their relative ratio going up to 87.4. With no resets, Epi2s are adapted to famines that are three years long, so the pattern NFFFNFFF gives them an even larger advantage over the other two groups. With this pattern, Epi2s will make up 90 percent of an initially evenly divided population in 329 years.

Lets add another type of animal to the above: the Epi1s, which like the Epi2s switch to small progeny after a famine, but in this case the progeny revert back to normal after just one generation. Over a period of 20 years, can you come up with a famine-year schedule such that all four types of animals (normals, smalls, Epi1s and Epi2s) exist in virtual equilibrium over this time period?

For this question, note that the numbers of the normal and the small groups are only affected by the number of famine and nonfamine years and not their temporal arrangement. So we have to find a positive number of nonfamine years n such that 1.6n1.320-n is as close as possible to 1.5n1.3520-n. This happens for seven nonfamine and 13 famine years, which gives a relative ratio of 813 to 845 for normals to smalls. How do the years need to be arranged to equalize the numbers of Epi1s and Epi2s? As noted above, without resets, Epi2s are best adapted to famines that last three years, and similarly, Epi1s are best adapted to famines that last two years. So our 20-year pattern needs to have famines of both these durations. The pattern NFF NFFF NFF NFFF NFF NFN meets all the conditions mentioned and gives relative scores of 809 for Epi1s and 817 for Epi2s on the above scale, which are both within 0.5 percent of the number for normals. This seems to be the best approach to virtual equilibrium.

So what these simple models teach us is that it is possible to come up with environmental conditions that will lead natural selection to favor epigenetic inheritance across generations if the selecting factor (here, famine) occurred frequently enough in an animals evolutionary history in the right pattern. Furthermore, there can be patterns that maintain different groups of the species at relatively constant numbers, ready to take advantage of a change in climate, rendering the species as a whole more stable and prepared for several different eventualities.

As I discussed in the puzzle column, scientists have found molecular mechanisms that can implement these transgenerational changes by suppressing the activity of certain genes through the attachment of methyl groups (DNA methylation) or through changes in the configuration of the protein that packages the DNA (histone modification). Transgenerational inheritance is even easier in small organisms that do not go through a germ cell stage, such as bacteria. These organisms can use even more efficient mechanisms that have allowed the evolution of the spectacular DNA-cutting system called CRISPR, which is currently revolutionizing genetic engineering. This system uses bits of DNA called transposons or jumping genes that can jump around from one location to another in genomes. Its amazing what natural selection can achieve in evolutionary time!

Thanks to all who participated in this Insights puzzle. I enjoyed reading your comments and especially my dialogue with Josh Mitteldorf. The Quanta T-shirt goes to Ty Rex. Congratulations!

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Solution: 'Darwinian Evolution Explains Lamarckism' - Quanta Magazine

The next evolution in office working could be employees getting implanted with a microchip – Recode

From pacemakers that keep the heart beating to swallowable sensors that can tell when someone takes their meds, people have been implanting machines into their bodies for decades.

But a growing trend in bodily implants inserting a computer chip under the skin is more about morphing people into literal cyborgs than addressing a medical condition.

Im turning the internet of things into the internet of us, said Jowan Osterlund in an interview with Recode. Osterlund is the founder of Biohax, a Swedish company that specializes in injecting small microchips, about the size of a grain of rice, under peoples skin.

The microchips, says Osterlund, can be programed to speak to other networked devices, like coffee makers, speakers or doors with electronic locks. The idea is that its more convenient to wave your hand in front of the door than use a key card.

Inserted by a syringe into the skin between the thumb and the index finger, the chips communicate with other devices using Near Field Communication. Its a wireless way of linking devices in close proximity to each other, similar to the way Bluetooth works. Contactless payment systems, like Apple Pay, also use NFC.

Last year, Microsoft invited Biohax to its TechDays conference in Sweden to implant some of the speakers at the conference, as well as a few Microsoft executives in attendance, according to Osterlund.

Scientists have been implanting animals with microchips for years to help track down lost pets or monitor endangered species. In the U.K., microchipping dogs became a mandatory practice in 2016.

The procedure for humans, though, could raise concerns about security. If hacked, microchips implanted inside the body could be read to reveal a persons location and length of time spent somewhere, as well as information about your health or any data stored on the chip.

All kinds of medical devices can be hacked, after all. In 2015, the Food and Drug Administration recommended hospitals stop using a line of drug infusion devices after a security researcher discovered how easy it would be for a hacker to commandeer the device and overdose a patient.

Biohacking has become kind of a niche community in the past few years. Companies like Dangerous Things, a biohacking supply company based in Seattle that sells microchips and all the gear needed to insert the devices under the skin, have sprouted up. Theres also Grindhouse Wetwear, a biohacking company based out of Pittsburgh, thats created a LED star that can be implanted under the skin to light up when activated by a magnet.

Elon Musk is even reportedly starting a new company, Neuralink, which will make implants for the human brain that can wirelessly interface with a computer. Though details on the new venture are thin, Musk hinted at the idea at Recodes Code Conference last year, when he described a digital layer located above the cortex, built into the brain.

Musk hopes that one day the technology, which he calls neural lace, could be used to improve brain function and help humans keep apace with rapid advancements in artificial intelligence.

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The next evolution in office working could be employees getting implanted with a microchip - Recode

Trump’s evolution on Syria didn’t happen overnight – CNN

But while the decision to strike Syrian government targets marked a sharp reversal in the President's stance on Syria -- one that called for a laser-like focus on ISIS and largely ignoring Assad -- the sharp, 180-degree turn didn't happen over a matter of days.

Months earlier, during an off-the-record holiday gathering with reporters at his opulent Mar-a-Lago estate a week before Christmas, Trump spoke at length about the carnage of the Syrian civil war, revealing that the issue was weighing on him as he prepared to take office. Trump spokeswoman Hope Hicks authorized CNN on Friday to report the contents of his remarks on the topic at the gathering, which CNN attended.

He described the slaughter of civilians in Syria as a "holocaust," and remarked on the "high pain threshold" of the population there.

Trump also described in detail a video he had seen of an elderly woman being shot multiple times in Syria, struggling as she tried to continue to walk.

And then, he acknowledged that the US had a "responsibility" over the devastating Syrian conflict -- the same word he would use months later before approving the launch of 59 Tomahawk cruise missiles to target a Syrian Air Force base.

"I now have responsibility. And I will have that responsibility and carry it very proudly, I will tell you that. It is now my responsibility," Trump said Wednesday during a White House news conference one day before approving the airstrike.

Trump said that the chemical weapons attack "crossed a lot of lines for me," a telling comment that signaled his shifting willingness to strike the Syrian regime.

But even as he spoke broadly during the December cocktail gathering about a US responsibility over the horrors taking place in Syria, he was clearly undergoing a shift in his approach to the conflict there as his moral responsibility as the US President and "leader of the free world" began to sink in.

It was clear Trump was giving more thought to the Syrian conflict that he would soon inherit as president, and he indicated he would be weighing different ways the US could act to stop the atrocities that continued to unfold in Syria.

He declined to say if he would take military action, parroting his oft-repeated line that the US should act first and talk later, rather than telegraph military actions in advance.

Trump spoke at length about the "tragedy" unfolding in Syria and the atrocities the world had grown all too accustomed to seeing and his demeanor and thoughtfulness as he addressed the topic struck reporters who had covered Trump's campaign since its early days as a crucial piece of insight into how Trump was becoming more clearly aware of the real world implications of his startling election victory.

With his strikes against a Syrian government target on Thursday night, Trump made clear that his Middle East policy won't just be driven by a single-minded focus on terrorist groups like ISIS or core national security threats -- but could be expanded to address the United States' moral responsibility in the world.

That's not something Trump spoke about during his campaign for president. Rather, Trump touted an "America First" philosophy that he said would drive his domestic and foreign policy. He decried the Iraq War as a "stupid" decision that had led to needlessly spilled blood and treasure in the Middle East.

Trump called for keeping US military action in the Middle East singularly focused on eliminating ISIS and argued that the US had "bigger problems" than Syrian President Bashar al-Assad.

"We cannot be the world's policeman," Trump said at his first presidential debate against former secretary of state Hillary Clinton, whom Trump called out for her role in some of the very foreign interventions Trump railed against on the stump.

Trump's internal shift didn't translate into US policy until this week after the latest images of the Assad regime's horrific violence against civilians were broadcast around the world.

Secretary of State Rex Tillerson insisted that the decision to strike was not triggered by an "emotional reaction," but made clear the decision was driven by Trump's refusal to "turn a blind eye" to the Syrian violence.

The chemical weapons attacks that prompted Trump to strike had happened "on his watch," Tillerson said of Trump.

As recently as last week, the administration's top officials continued to articulate Trump's realpolitik view of the Syrian civil war as he articulated it on the campaign.

"With respect to Assad, there is a political reality that we have to accept," White House press secretary Sean Spicer said last week. "The United States has profound priorities in Syria and Iraq, and we've made it clear that counterterrorism -- particularly the defeat of ISIS -- is foremost among those priorities."

Thursday night's strike sent a clear message that Trump was willing to act beyond those counterterrorism priorities, but US officials made clear that the strike was meant to send a message -- not fundamentally alter US policy in the region.

"I would not in any way attempt to extrapolate that to a change in our policy or posture relative to our military activities in Syria today. There has been no change in that status," Tillerson told reporters after the cruise missiles had struck their targets.

Lt. Gen. H.R. McMaster, the president's national security adviser, said the strike "should" shift Assad's calculus on chemical weapons.

Still, he acknowledged that the strike did not eliminate Assad's capacity to conduct the ghastly attacks.

CNN's Noah Gray contributed to this report.

Excerpt from:

Trump's evolution on Syria didn't happen overnight - CNN

Dissent with Modification: Soothing EvolutionReligion Tensions in … – Scientific American

On topics ranging from astrophysics to public health, rejections of scientific consensus can prove quite inflexible when bolstered by religious doctrine. Buta new approach to teaching evolutionary biology appears to ease such tensions. It involves airing perceived conflicts between religion and evolution in the classroom rather than simply presenting a mountain of evidence for evolution. Such a curriculum could help biologists (most of whom claim to hold no religious beliefs) more effectively prepare students (most of whom profess belief in God) to meet the nations growing need for scientists and technologists.

During a two-week module on evolution that was part of an introductory biology course at Arizona State University, the instructor explored a variety of viewpoints about the relation between some religious beliefs and the development and diversification of life, ranging from evolution without the involvement of a deity to various types of creationismincluding theistic evolution. Students were encouraged to express their opinions and concerns.

Surveys filled out by 60 students before and after the module revealed that the number of students who perceived a sense of a conflict between religion and evolution at the start was cut in half by the end. An analysis of the results is detailed in the February issue of the American Biology Teacher.

In response to instructors concerns about limited classroom time, a follow-up project compressed the two-week module to six minutes. Remarkably, unpublished results suggest this brief exposure also proved effective at reducing students perception of a conflict. If we encourage national policy documents that promote these teaching practices, says study co-author Elizabeth Barnes of Arizona State, perhaps we can increase acceptance of evolution among our students, future teachers and future political leaders.

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Dissent with Modification: Soothing EvolutionReligion Tensions in ... - Scientific American

Syria strikes: The story behind Trump’s ’72-hour evolution’ – Fox News

As President Trump was wrapping up his dinner with Chinese President Xi Jinping at Mar-a-Lago a hearty menu that included pan-seared Dover sole and dry-aged New York strip steak, paired with California wines he delivered the news: The U.S. had launched strikes on Syria.

By this point, the first of 59 missiles already had started to rain down on the Assad airbase alleged to have been used to carry out this weeks deadly chemical attack. Planning for a U.S. response had been underway since Tuesday but the final decision to order missile strikes, and the militarys execution of that directive, took place over the course of just a few hours Thursday evening.

The timeline of the presidents decision-making and the mission itself was detailed late Friday by White House Press Secretary Sean Spicer and other U.S. officials. The presidents top spokesman described the course of events as a 72-hour evolution that involved updates and options and refinements before a final decision.

OBAMA OFFICIALS UNDER FIRE FOR CHEMICAL WEAPONS CLAIMS

Hes not going to telegraph his next move, Spicer cautioned, but described Thursdays actions as carefully planned, decisive and justified.

According to Spicer and other officials, the timeline played out as follows:

Tuesday at 10:30 a.m. ET: Trump was informed during his daily briefing about the suspected chemical weapons attack in Syria. Trump asked his team for more information. The team developed initial options.

Tuesday at 8 p.m.: Preliminary options were presented and refined.

Wednesday morning: Another restricted principals meeting was held where options were further reviewed and refined.

Wednesday at 3 p.m.: Trump was briefed on updated options at a national security meeting. He reviewed them, asked questions, and requested more information including options for strikes on Syria.

Thursday at 1:30 p.m.: En route to Florida, Trump convened his national security team aboard Air Force One.

Thursday at 4 p.m.: Trump, Secretary of State Rex Tillerson, Secretary of Defense Jim Mattis, National Security Adviser H.R. McMaster and others met in a secure room in Palm Beach. The president gave the okay to move ahead. This decision was made at about 4:30 p.m.

Thursday at 7:40 p.m.: Navy destroyers in the Mediterranean launched Tomahawk missiles into Syria.

Thursday at 8:30 p.m.: Foreign leaders and congressional leaders started to be notified. Around that time, the first missiles were hitting. Trump informed President Xi as their dinner was ending. According to Spicer, all 59 missiles hit their target. After dinner, Trump held a secure call with the Joint Chiefs.

He asked about reaction from the world community as well as congressional leaders and was informed that there was fairly unanimous praise for the decision and the actions the president took, Spicer said.

Trump mostly has won bipartisan praise on Capitol Hill for the response, though some have warned that he must seek congressional authorization going forward. The strikes also fueled a fiery U.N. Security Council session on Friday, where Syrias allies condemned the action.

The strikes took some by surprise, considering Trumps past criticism of intervention in Syria. Spicer, and the president himself, say he was moved by the horrific images of victims of this weeks chemical attack.

It was very disturbing and tragic and moving to him, Spicer said.

Fox News Judson Berger, Lucas Tomlinson and Lesa Jansen contributed to this report.

The rest is here:

Syria strikes: The story behind Trump's '72-hour evolution' - Fox News

College Hockey News: Adaptation and Evolution – College Hockey News

April 7, 2017 PRINT

by Avash Kalra/Senior Writer (@AvashKalra)

(photo: Todd Pavlack)

CHICAGO The Denver players and coaching staff have been asked about last season's NCAA Frozen Four semifinal loss to eventual champion North Dakota over and over.

And over and over again.

That loss has been a black cloud hovering perhaps fueling each of Denver's accomplishments this season. The Pioneers' nation-best 32 wins. Their 13-game winning streak from Jan. 21 to Mar. 11. Their NCHC regular season title. And now their long-awaited return to the national championship game, an all-NCHC tilt between Denver and Minnesota-Duluth set for Saturday night.

Denver sophomore Dylan Gambrell has been asked about that loss, too.

But the memory is vivid without the constant reminders.

"It's always in the back of your mind that feeling," Gambrell said before the final practice of Denver's season on Friday.

In reality, Gambrell has faced plenty of mental challenges over the past 12 months. Physical challenges, too.

A year ago, Gambrell was one-third of Denver's vaunted Pacific Rim line, which helped propel the Pioneers to last season's Frozen Four. Danton Heinen and Trevor Moore left during the offseason, leaving Gambrell with his 17 goals and 30 assists as a freshman as the potential focal point of the Pioneers' offense this season.

That was the burden he held before the puck even dropped on this 2016-17 season, long before Denver's dominant march to this year's title game.

But those plans seemingly changed during Denver's season-opening exhibition against Mount Royal on the first day of October. Gambrell suffered an upper body injury, tried to play the following weekend, but knew he had to be shut down for a time.

"He was our best player going into the year, and I'm talking about training camp," said head coach Jim Montgomery, the Spencer Penrose Award winner as the national coach of the year. "I'm not talking about just because of what he did last year. And then he got hurt in our exhibition game. He's a tough kid, a team player, played with three torn ligaments through the first weekend. Then we found out he needed to get surgery."

Gambrell missed only four games much less than originally expected. His return sparked Denver's lineup, but the sophomore forward had to adjust his game immediately.

"People don't know this. He played with a cast," Montgomery said. "He couldn't handle passes. So he had to try and adapt his game. He's a great team guy. He's really grown this year. He is still a huge focal point for our team. We don't win if he's not going and he knows that. His pace and his relentlessness adds skill to our group that not a lot of players possess."

Entering last night's national semifinal with Notre Dame, Gambrell hadn't scored in eight games the longest goalless streak of his career so far. He still averaged an assist per game during that stretch, though, playing a pivotal role alongside classmate Troy Terry on Denver's top line.

Against the Fighting Irish, Gambrell finally broke through, scoring two goals in the Pioneers' 6-1 win the first on a heads-up wraparound play to put Denver up 4-0 and in cruise control late in the second period

"I didn't feel any pressure," said the San Jose Sharks prospect. "I felt that as long as I'm doing the right things with the puck, and helping my team in any way that I can and we're having success and other guys are scoring and everyone's contributing, it doesn't really matter who gets the credit. As long as we're scoring and winning games.

"Personally, I feel like I've rounded out my game a little more and really honed in on my defensive zone play being on the right side of the puck and just doing the things away from the puck that are going to help the team."

Added Montgomery, "I didn't even know that he hadn't scored in eight games until you said that. That's how our team is built. We're built on the team having success. In my mind, he had been playing really well. He just hadn't scored. We did talk to him about getting into the tougher scoring areas inside the dots. We felt like he was getting a little too much from the outside. Last night, he went to tough areas."

Despite all the hurdles, Gambrell's 13 goals this season are still tied for third on the team, with Jarid Lukosevicius. Terry and freshman Henrik Borgstrom each have 22 goals to lead the team.

Borgstrom battled food poisoning the night before the NCAA tournament began. Terry dealt with almost unreasonably high expectations after willing Team USA to the gold medal in January at the World Junior Championships.

In each situation, the Denver players learned to adapt.

As a result, they've evolved into a team that isn't defined by last year's Frozen Four loss, into a team that's balanced throughout the lineup, and yes, into the team to beat all tournament.

Now, there's one hurdle remaining. And that's the Saturday night showdown with Minnesota-Duluth, with the NCAA trophy awaiting the winner.

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College Hockey News: Adaptation and Evolution - College Hockey News

Camila Cabello’s Beauty Evolution – TeenVogue.com

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Camila Cabello's Beauty Evolution - TeenVogue.com

Meteorologist applies biological evolution to forecasting – Science Daily


Science Daily
Meteorologist applies biological evolution to forecasting
Science Daily
So Roebber applied a mathematical equivalent of Charles Darwin's theory of evolution to the problem. He devised a method in which one computer program sorts 10,000 other ones, improving itself over time using strategies, such as heredity, mutation and ...

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Evolution – Salon.com

They don't believe in science, and pander to evangelicals -- as a result, the Republicans remain a party of stupid

The skeptics fall short for the same reason the creationists can't overturn evolution. Their doubts are unfounded

A University of California cognitive scientist believes we learned to see things as they are as a means of survival

It's easy to mock and criticize the Creation Museum. We also need to understand the worldview of those who visit

Mayhem and chaos at a Kansas theater when a genius takes his gun and permit to the movies, then shoots himself VIDEO

Exclusive: We talk with sparring partner Richard Dawkins about New Atheism, Twitter & why he sees Ahmed as a fraud

No one yet knows where the newly discovered Homo naledi fits in the complicated story of hominids on Earth

Hide your children, hide your scalps

Research suggests the disease is linked to changes in brain size on the evolutionary road from ape to man

The justice claims to be an originalist, but his real loyalty is to religion and a phony man in the sky

Louisianans can now get a 19th Century education to accompany their 19th century economy

The young scientist was stuck on the concept of species. Then something amazing happened to energize his thoughts

The Manx, the Munchkin -- without fancy cats, we'd have no memes. Tip your hat to the genius of evolution

Pigs provided meat, and also solved public health problems in ancient days. Here's how evolution worked

They hope this attempt will fare better than the last four failed ones.

Who would've thought a few extra inches could make it easier to survive a frigid winter? VIDEO

Evolution and the "sexy geek" syndrome: What if humans could re-evolve and be perfect?

A fascinating new study offers fresh clues about the origins of mankind -- and his home planet

Who knew evolution could be so orgasmic?

Tyson, Richard Dawkins and Bill Nye discuss evolution on "StarTalk Live!" VIDEO

Page 1 of 10 in Evolution

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Full Moon In Virgo: Seeking Solutions For Our Limitations, Wounds & Blockages – Collective Evolution

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We are having a Full Moon in Virgo on March 12th, however, for those in the Western part of the world it will appear the fullest on the night of March 11th. Full Moons are the peak of the Moon cycle when both the Sun and Moon are in opposite signs, with this case being Virgo and Pisces.

The opposition between the two signs can bring up situations in which we need to learn to work with both sides of the polarity, and in many situations it can be in a challenging or emotionally charged way. In this case, however, the South Node is in Pisces (where we also had the last solar eclipse) and the North Node is in Virgo, which started in November 2015 and will finish in May.

The month of Pisces (Feb 19 Mar 20) is generally one of the more magical periods of the year, and a good time to explore and participate in anything that involves spirituality, creativity, and healing. However, because the South Node is in Pisces, and we had the recent eclipse there, we are also being called to release any negative qualities of Pisces we may have. This energy is still playing out over the coming months. (You can read more about it here.)

During this Full Moon, we are being reminded of the evolutionary push we need to make towards the Virgo energies that we are lacking, which the Universe is calling on us to embrace. Virgo is about being grounded, realistic, attentive, organized, clean, pure, and productive. Taking care of our physical bodies and living a functional life is important when we are dealing with the Virgo sector of the zodiac. In situations like this, sometimes challenges come up that push us to be able to adapt to lifes challenges in a better and more efficient way.

Venus started its retrograde just 8 days prior to this Full Moon. This is shaking things up and pushing us to reflect on our relationships, values, money, and how we express and receive love. This may or may not be directly related to this Full Moon for everyone, however, it is still an important part of the backdrop until April/May.

The Sun is applying towards a conjunction to Chiron with Mercury close by. Chiron is somewhat of an asteroid associated with our blocks, wounds, traumas, as well as healing. Any situations or challenges that come up during this Full Moon could be associated with the need to heal and/or move beyond what is holding us back. The Sun will be making an exact alignment with Chiron on March 14th.

The Sun, Chiron, and Mercury with the Moon opposing them are all forming a square aspect with Saturn in Sagittarius. We may face obstacles, limitations, or perhaps the need to get real about a certain perspective around something related to the Virgo-Pisces opposition. The Sun will make an exact square to Saturn on March 17th/18th that will bring up some of these things.

Mercury has been in Pisces since February 25th/26th and will be going into Aries a day after this Full Moon on the 13th/14th. This could lead us to be more imaginative and perhaps more psychic, but due to being somewhat mentally absent. Mercury here can make our communication less direct and confusing and easier to overlook details and more challenges with left-brained activities. Once it goes into Aries our minds and communication will be quicker and more direct.

What are your limitations, blockages, and wounds showing you about what you need to change? What can you do to be more healthy, efficient, and productive?

Interestingly, daylight savings time starts on the day of the Full Moon in North America. I would imagine that many people will face challenges as a result of not paying attention to it even though it is a Sunday. This is a great example of the Virgo-Pisces polarity at play.

Since Virgo is associated with health and the Full and waning Moon is associated with release, this can be a good time to do some sort of cleanse/detox up until the next New Moon in two weeks. This is especially so since we will be transitioning from Winter to Spring, which is generally the best time to do a cleanse. This can also be a good time to get an early start on your spring cleaning.

The exact time of the Full Moon will be 2:54pm Universal Time; you can find out what that is in your time zone by clicking here.

Have you ever had an astrology reading based on your specific birth time?Get a more detailed personalized reading with astrologer Carmen Di Luccio based on your exact birth date, time, and location.Click here for more information.

Your life path number can tell you A LOT about you.

With the ancient science of Numerology you can find out accurate and revealing information just from your name and birth date.

Get your free numerology reading and learn more about how you can use numerology in your life to find out more about your path and journey. Get Your free reading.

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Full Moon In Virgo: Seeking Solutions For Our Limitations, Wounds & Blockages - Collective Evolution

Teaching of evolution, climate change at stake in Byron Donalds’ bill – Naples Daily News

Byron Donalds(Photo: Submitted)

Its been more than three years since a school board meeting in Volusia County was cancelled after a heated dispute over what some considered to be pro-Islam content in a history textbook raised safety concerns over potential violence. Dozens of protesters gathered before the meeting, holding signs with messages such as Stop Teaching Lies.

But the battle over what should be taught in classrooms is still raging, and its expanded to the state level.

Last week state Rep. Byron Donalds, R-Naples, introduced House Bill 989, which specifiescriteria classroom materials must meet. It states these materials must provide a noninflammatory, objective, and balanced viewpoint on issues, be free of pornography, and be age appropriate. If passed, the bill would also give all taxpayersthe right to dispute these materials in front of a school board. In Donaldshometown in Collier County that right is reserved for parents only.

Donalds, whose three sons attend a charter school in Southwest Florida, said the bill is intended to ensure children are exposed to quality instructional material that adheres to Florida standards and to provide an easily accessible avenue for the public to vet classroom materials.

Donalds assured the purpose of his bill is not to accomplish a defined outcome.

His critics and there are many argue the bill gives evolution and climate change skeptics a platform to influence how these subjects are taught in classrooms, or if theyll be taught at all.

In the extreme case, is that possible? Yes, Donalds said. But (these critics) are trying to read down a slippery slope that doesnt exist.

Donalds emphasized such changes could only be made if approved by a school board.

Collier's school board is currently made up of three moderate and two conservative members, one of which is Donalds'wife, Erika. If the bill is passed, significantmodificationsto thecurriculum would be highly unlikely. However three seats will be up for election in 2018, and if those are won by conservatives, the county could witness major changes in what students are being taught.

Many districts in Florida are conservative, and those values and ideologies may alreadybe reflected in their elected school board members.

This has caused a chilling effect on teachers, said Brandon Haught, a high school biology and environmental science teacher in Orange City, Florida, and a founding member of Florida Citizens for Science, a group that describes their mission as defending against attacks on science education from lawmakers.

Haught pointed out many people find the teaching of evolution and climate change inflammatory and unbalanced, thus any person visiting Florida who pays tax on a cup of coffee could make the case for teaching creationism and non-human induced climate change in front of a school board. If the majority of the board agrees, those topics would be integrated into the curriculum of each public school in that district.

We would definitely not want that being taught in a science classroom, because, well, its not science, Haught said.

Keith Flaugh, co-director of the Florida Citizens Alliance, a conservative group that helped write the language for the bill, doesnt deny the possibility of that outcome.

So long as the material is presented in a balanced way, thats fair game, he said. We want kids to get a balanced view of the world, not an indoctrinated view of the world.

Mike Mogil, co-owner of Mathworks Tutoring in Naples and a former meteorologist, said if the bill is passed he would use the opportunity as a non-parent to challenge how climate change is taught.

On a scale of 1 to 10, 6,000 I would be there in front of the school board, he said. If were going to teach climate change, lets teach it in the context of geological changes. Not to say that humans are great stewards of planet Earth we are not but CO2 produced by humans is not the primary cause.

But Flaugh assured that exposing children to these types of alternative views isnt the intention of the bill.

Our kids should not be pawns between the Rs and the Ds, he said.

Flaugh said he identified 60 textbooks used in several Florida counties that he believes violate Florida standards because they contain abusive material.

This is not just about pornography. This is not just about religious indoctrination. This is not just about political indoctrination. This is about the total rewriting of our constitutional values, he said.

Andrea Messina, executive director of the Florida School Board Association, said she thinks teachers and administrators do a good job of vetting school materials and ensuring they comply with Florida standards.

People dont just randomly bring in books for no reason, she said.

However, Messina embraces the idea of opening up the materials vetting process to taxpayers. She said it would encourage parents to become more involved and open up an important dialogue that would make us be more intentional about what we use and why we use it.

State Sen. Kathleen Passidomo, R-Naples, disagrees. She said the bill has good policy intent but that the vetting process shouldnt be left up to all taxpayers.

The whole random nature of it would make it chaotic. I dont think theyre accomplishing what they intended to, she said.

Donalds said part of the reason he hopes to expand vetting rights to the public is to help relieve parents of that responsibility.

If you have two or three children and you work all day and take your kids to extracurricular activities and put food on the table, its so incredibly difficult to find the time to sit there and go through that process, he said. We should let the public, who funds education, have a seat at the table.

In Collier County, that process requires a parent to go directly to their childs teacher to address their concerns. If a solution isnt reached with the teacher, the problem would be put forth to the principal, then the districts curriculum specialist and then the school board.

Collier County school board vice chairwoman Erika Donalds said shes not happy with the status quo.

Theres excessive red tape. The process really discourages anyone from bringing up an issue, she said.

Furthermore, she notes some Florida counties dont have a defined process for how parents can challenge their childs curriculum in front of a school board.

Though anyone has the right to voice their opinion during the public comments portion of a school board meeting, many proponents of the bill argue these speakers arent taken seriously.

The school board has the purview to largely ignore them, Byron Donalds said. We all know that doesnt actually put you in the game.

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Oskar Sundqvist’s ‘evolution’ brings call-up from Wilkes-Barre/Scranton – Pittsburgh Post-Gazette

EDMONTON, Alberta Thursday was a bit of a travel day for Oskar Sundqvist.

He got word in the afternoon that he was getting called up from the American Hockey Leagues Wilkes-Barre Scranton Penguins to the big-league club.

The only problem? The Penguins were in Edmonton, getting ready to play the Oilers. Believe it or not, there arent direct flights from Wilkes-Barre/Scranton to Edmonton.

So Sundqvist went from Wilkes-Barre to New York, New York to Toronto and Toronto to Edmonton, arriving at the team hotel late Thursday.

It took a while, he said after the Penguins morning skate Friday. A lot of running through airports.

The call-up itself has also been a bit of a long time coming for Sundqvist, who played in 18 regular season games and two playoff contests for the Penguins last year. This season, though, he has spent the whole year in Wilkes-Barre, scoring 16 goals and notching 23 assists in 53 games.

You need a little bit of luck, Sundqvist said. When I went on a hot streak down there, everyone was healthy up here, then I went down a little bit. You need a little bit of luck for when it comes. I havent been thinking about it too much. Just been trying to find my game and play my game down there.

After Sundqvists stint in the NHL last year, during which he recorded one goal and three assists, he and Penguins brass both agreed his offensive game needed some refining before he could claim a regular spot on the big-league roster.

Thats precisely what he has tried to focus on in Wilkes-Barre this season. It didnt take long for Sundqvist to start producing results, either, with 30 points in his first 28 AHL games this season.

I played in a lot of offensive situations down in Wilkes, Sundqvist said. It gave me a lot of confidence, especially in the offensive zone.

His offensive production has cooled a bit recently, partially due to some injuries, but Wilkes-Barre/Scranton coach Clark Donatelli said he can see the progress Sundqvist has made this season.

At 6-foot-3, the rangy Sundqvists defensive length will likely always been his greatest asset, but if he wants to fill the third-line center role the Penguins envision for him, he has to be able to contribute on the offensive end, as well.

We wanted him to play well defensively, but also when he gets a chance, to take advantage of the offensive abilities he has, Donatelli said. To challenge defensemen offensively, challenge them in the [offensive] zone. Hes done that. Hes answered the bell.

Given his size, one of the best ways Sundqvist can contribute offensively is by getting to the front of the net and wreaking havoc for opposing goalies, and Donatelli said he even could be a net-front man on the power play if called upon.

Its unlikely the Penguins will use him in that capacity, at least right away, but coach Mike Sullivan agreed with Donatellis assessment of Sundqvist. His natural defensive ability is still there, but the improved offensive game is what has the Penguins bullish on Sundqvists prospects for this season and beyond.

We knew that [defense was] the strength of his game, Sullivan said. We can use him in a checking capacity, hes a good penalty killer, hes got good awareness away from the puck.

But really, the evolution in his game this year has been on the offensive side. Hes turned into a good playmaker. Hes going to the net, hes scoring goals. Thats great for us. Its great for him, and its great for us, to see his complete game develop down there.

Dave Molinari contributed. Sam Werner: swerner@post-gazette.com and Twitter @SWernerPG

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Synthetic Yeast Chromosomes Help Probe Mysteries of Evolution – Scientific American

Evolutionary biologist Stephen Jay Gould once pondered what would happen if the cassette tape of life were rewound and played again. Synthetic biologists have tested one aspect of this notion by engineering chromosomes from scratch, sticking them into yeast and seeing whether the modified organisms can still function normally.

They do, according to seven papers published today inSciencethat describe the creation, testing and refining of five redesigned yeast chromosomes. Together witha sixth previously synthesized chromosome, they represent more than one-third of the genome of the bakers yeastSaccharomycescerevisiae.An international consortium of more than 200 researchers that created the chromosomes expects to complete a fully synthetic yeast genome by the end of the year.

The work the team has already done could help to optimizethe creation of microbes to pump out alcohol, drugs, fragrances and fuel. And it serves as a guide for future research on how genomes evolve and function.

The amazing thing here is that they are figuring out how to tweak the genomenot just synthesize itthrough a design-build-test-learn cycle, says Jack Newman, co-founder of Amyris Biotechnologies in Emeryville, California. The approach is similar to one that computer scientists might take when trying to understand a computer code written a decade ago, he adds, although the task is much harder with genomes that have undergone millions of years of evolution. Yeast originated more than 50 million years ago, when theSaccharomyceslineage branched off from other fungi.

In 2010, geneticist Craig Venter and his team revealedthe first synthetic genome, a stripped-down version of the genetic code from a bacterial parasite,Mycoplasma mycoides. Four years later, a team led by Jef Boeke, a yeast geneticist at New York University Langone Medical Center in New York City, synthesizeda chromosome from yeast, a more complex organism that is classified as a eukaryotea group that also includes plants, worms and people.

Venters goal was to realizethe smallest genome needed to sustain life, but Boeke sought to explore fundamental questions about evolution, such as whether yeasts could have evolved through alternate routes. He turned the query into a hypothesis testable with synthetic biology: how much can you change a genome and still have a working organism?

To look for an answer, Boeke assigned each ofS. cerevisiaes 16 chromosomes to teams of collaborators, spread across the United States, United Kingdom, China, Singapore and Australia. Each was to create a chromosome that was stable yet evolvable, and would keep yeast functioning as usual.

The teams used computer programs to design the codes of their respective chromosomes. They omitted some sequences found in naturally occurring yeast chromosomes, such as repetitive parts of the genome, in hopes of increasing the stability of the synthetic versions. And they endowed their creations with a mechanism that mimics the random variation that drives evolution. When this scrambling system is triggered, it can shuffle, duplicate and delete genes at random.

A team led by researchers at the Pasteur Institute in Paris documented dramatic structural changes in the nucleus of the synthetic yeasteven as it continued to thrive, making proteins and reproducing. It seems like we can really kind of torture the genome in complicated ways and frequently the yeast shrugs its shoulders and grows like normal, Boeke says.

Some teams in the consortium invented techniques to rapidly identify errors in synthetic chromosomes. Another group, led researchers at Tianjin University in China, optimized techniques to remove bugs in the genetic sequences of the chromosomes, in one instance by using the gene-editing tool CRISPRCas9.

Considering that they synthesized 536,024 base pairs in that chromosome and only used CRISPR to mess around with 45 of them is kind of refreshing, says George Church, a geneticist at Harvard University in Cambridge, Massachusetts. It makes you feel like maybe this is the next big thing.

Genome synthesis is unlikely to displace tools such as CRISPR, which allow scientists to add or subtract a limited number of genes in an organism, he says. But it may become the favoured method for applications that require complicated genetic changes. This includes engineering yeast and other microbes to produce fragrances and other materials; manufacturers that rely on such microbes could use synthetic genomes to make those organisms more resilient to harmful viruses, for example.

If you took those [microbe] strains offline and reprogrammed their code, then put them back in, the viruses would be so far out of touch they couldnt come back, Church says. It would be like going back to the Middle Ages and giving one country hydrogen bombs.

Several groups have launched efforts to synthesize genomes from species such as the bacteriumEscherichia coliand from people. Boeke is confident that his consortium will create a fully synthetic yeast genome by the years end. The team has already created several additional chromosomes, and is debugging and testing them.

The groups latest results will encourage others to dream big, Church says: Theyve been able to induce radical changes in the code, so it emboldens you to be even more radical.

This article is reproduced with permission and wasfirst publishedon March 9, 2017.

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