Biochemistry – University of Utah

Faculty Spotlight

September 2015 saw the arrival of Erhu Cao as a new Assistant Professor of Biochemistry. In his postdoctoral fellowship with David Julius at UCSF, Erhu characterized TRP ion channels, which are key players in sensory signaling. This included collaborating with the laboratory of Yifan Cheng to determine structures at near atomic resolution. This landmark achievement heralded the cryo-EM transformation that is currently sweeping structural biology. Prior to that, Erhu received his bachelors degree from the Huazhong Agricultural University in China, followed by his Ph.D. studies at Albert Einstein College of Medicine in the labs of Steven Almo and Stanley Nathenson, where he determined crystal structures of receptors that contribute to cellular immunity, and received the Julius Marmur Research Award.

Erhus new lab at Utah is broadly interested in understanding atomic-scale mechanisms of how membrane proteins function under normal and diseased states. Membrane proteins play critical roles in nearly every aspect of physiological processes that encompass relaying signals between cells, transporting small molecules and ions across the membrane and catalyzing vital enzymatic reactions. Importantly, membrane proteins constitute ~60% of targets of currently approved drugs and thus in-depth knowledge about their inner workings is sorely needed to inform the development of effective therapeutic strategies for treating various human diseases.

Erhus current research program focuses on the structure and function of receptors, transporters, and ion channels that are implicated in polycystic kidney diseases (PKD), which is a widespread genetic disorder that affects 600,000 Americans and 12.5 million patients worldwide. He also aims to develop pharmacological tools (e.g. small chemical compounds, peptide toxins, and antibodies) to probe the function of ion channels and receptors. Importantly, such molecules may also serve as lead compounds that can potentially evolve into drugs for treating patients with PKD. To achieve these goals, Erhus lab employs a multidisciplinary approach that includes molecular biology, protein biochemistry, pharmacology, ion channel electrophysiological, X-ray crystallography, and single particle electron cryo-microscopy.

Erhu Cao Website

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Biochemistry - University of Utah

Annual Review of Biochemistry – Home

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Annual Review of Biochemistry - Home

Biochemistry – Simple English Wikipedia, the free encyclopedia

Biochemistry is the study of chemical reactions in living beings, and of biological molecules in general. It is important to cell biology and physiology. The study of biochemistry involves enzymes, nucleic acids, carbohydrates, sugars, proteins, and lipids. In the body, most of the molecules are polymers built of long chains of carbon atoms with hydrogen, oxygen and other atoms added.

The four types of large biological molecules (called macromolecules) are listed here.

Nucleic acids are long-chain carbon molecules which make DNA and RNA. Their building blocks are called nucleotides. DNA is a common type of nucleic acid, which is usually joined up in a double helix. It is the substance of heredity and holds the information for life which passes from generation to generation. RNA is the other main type of nucleic acid. It acts to make the information from DNA work inside the cells of the body. There are many different types of RNA, each of which has a function inside cells.

Proteins are polymers of amino acids. There are twenty different common types of amino acid. Broadly speaking, they have two kinds of function. The first is structural: they make up many of the body's key structures in cells and tissues. Muscle, for example, is mainly made of protein. The second is as enzymes, which are long-chain proteins which may include an inorganic group as a co-enzyme.

Enzymes are special types of protein which greatly speed up the chemical reactions in a living thing. Their function is to speed up and help chemical reactions, by lowering the enzyme's activation energy. There are a few enzymes that are not proteins but instead made of RNA, which are called ribozymes, and are in fact nucleic acids.

Carbohydrates include sugars and starches. The simplest carbohydrates are the monosaccharides, meaning "single sugar". Examples of monosaccharides are glucose and fructose. Polysaccharides are long molecules made from many units joined together. Examples are starch, glycogen, and cellulose. Carbohydrates have a number of functions, but the most important is to act as a ready source of energy for the body's metabolism. By breaking the chemical bonds in carbohydrates, energy is released and can be used by the body.

Lipids are fats, and waxes. Saturated lipids contain single bonds, and are found in butter and lard. Unsaturated lipids have one or more double bonds, and are often found in oils. The human body stores lipids as an energy source. When the body needs a large amount of energy, lipid molecules are broken down to release that energy.

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Biochemistry - Simple English Wikipedia, the free encyclopedia

Organic Biochemistry – American Chemical Society

The Forensics of Blood February 2008 (pp 4-7)

Author: Brian Rohrig Chemistry Connections: Organic/Biochemistry, Solutions Description: Describes how chemists determine if a substance at a crime scene is blood (luminol and hydrogen peroxide or phenolphthalein and hydrogen peroxide), and if so, if it is human blood (rabbit antibody clotting test). Discusses blood as a colloid. Also tells how criminal investigators can determine blood type. Discusses useful information about blood stains shape of blood droplets, transfer stains, projected stains. Two sidebars discuss the composition of blood, and the role of antibodies and antigens in determining blood type. The equation describing the reaction of luminal with hemoglobin is shown.

Author: Beth Nolte Chemistry Connections: Equilibrium, Organic/Biochemistry, Reactions, Solids/Liquids/Gases Description: Describes the nitrogen cycle and the role of excessive use of nitrogen fertilizers in polluting the environment. The chemistry of nitrogen, ammonia, oxides of nitrogen and nitrates are emphasized. Suggests that changes in farming methods can ameliorate the environmental effects. Includes sidebars on organic farming and the Haber-Bosch method of producing ammonia.

Author: Cynthia Washam Chemistry Connections: Organic/Biochemistry, Sustainability Description: Discusses the recent trend toward producing plant-based plasticscalled bioplasticsfrom plants like sugar cane, potatoes and wheat as an alternative to using petroleum. Explains two types of bioplastics, polylactide acid and polyhydroxyalkanoatepolymers made from simple sugar moleculesand includes structural formulas for these. Gives background on plastics as polymers. Discusses pros and cons of bioplasticsfor consumers and for the environment. Includes activity for students to make a compostable bioplastic.

Author: Michael Schirber Chemistry Connections: Bonding, Organic/Biochemistry, Reactions, Thermochemistry Description: Describes how molecules, like cellulose, found in plants like switchgrass and plant leftovers like corn stalks, can be made into gasoline. Uses lots of graphics to explain the use of zeolite catalysts in the process of stripping oxygen atoms from carbohydrate molecules to make hydrocarbon molecules that, in turn, make gasoline. Distinguishes green gasoline from biofuels like ethanol. Describes benefits of green gasoline.

Author: Claudia M. Caruana Chemistry Connections: History/Biography, Organic/Biochemistry, Solids/Liquids/Gases Description: Describes and explains the way in which general and local inhaled anesthetics work in the human body. Provides the reader with some history of anesthesiafrom 4200 BC to the present dayincluding nitrous oxide, ether and modern inhalation anesthetics, halogenated ethers. Discusses some biochemical mechanisms suggested to explain the effect of an anesthetic on the nervous system, although it also states the lack of a precise medical/scientific understanding of how anesthetics work.

Author: Diana Lutz Chemistry Connections: Bonding, Organic/Biochemistry, Reactions, Solids/Liquids/Gases, Thermochemistry Description: Describes how various special effects are created for movies, including fake snow, fake skin, fire and explosions. Some chemistry is detailed to explain how the materials are produced.

Author: Nadia Halim Chemistry Connections: Bonding, Organic/Biochemistry Description: Nanotechnology utilizing the elements carbon and silicon create nanostructures (1-100 nanos large) for use in electronics, medicine (drug delivery systems), clean energy production (solar cells). Three basic structures are nanotubes, nanowires, and fullerenes (Bucky balls). Construction of a nanostructure by electron beam lithography and photolithography is illustrated.

Author: Patrice Pages Chemistry Connections: Organic/Biochemistry, Reactions, Solids/Liquids/Gases, Solutions Description: Experimental cooking based on some understanding of chemistry and physics but primarily experimental using new physical forms of ingredients in the mix. Influence of color on taste perception studied; good taste influences amount eaten (savoring means less eaten).

Author: Linda Zajac Chemistry Connections: History/Biography, Organic/Biochemistry, Reactions Description: Discusses research done to discover why crystal jellyfish glow in the dark, which led to discovery of green fluorescent protein (GFP, for short). Describes how GFP genes can be inserted into DNA of other cells that can then act as tracers as they travel throughout the body. Describes the uses of other colors of fluorescent proteins that have been discovered, including: tracking viruses in plant diseases, helping to cure brain diseases, and cancer therapy studies. Might be used in class in discussion of light emission and absorption and energy and wavelength of light.

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Organic Biochemistry - American Chemical Society

Lehninger Principles of Biochemistry / Edition 6 by David …

Overview

Clear writing and illustrationsClear explanations of difficult conceptsClear communication of the ways in biochemistry is currently understood and practiced. For over 35 years, in edition after bestselling edition, Principles of Biochemistry has put those defining principles into practice, guiding students through a coherent introduction to the essentials of biochemistry without overwhelming them.

The new edition brings this remarkable text into a new era. Like its predecessors, Lehninger Principles of Biochemistry, Sixth Edition strikes a careful balance of current science and enduring concepts, incorporating a tremendous amount of new findings, but only those that help illustrate biochemistrys foundational principles. With this edition, students will encounter new information emerging from high throughput DNA sequencing, x-ray crystallography, and the manipulation of genes and gene expression, and other techniques. In addition, students will see how contemporary biochemistry has shifted away from exploring metabolic pathways in isolation to focusing on interactions among pathways. They will also get an updated understanding of the relevance of biochemistry to the study of human disease (especially diabetes) as well as the important role of evolutionary theory in biochemical research.

These extensive content changes, as well as new art and powerful new learning technologies make this edition of Lehninger Principles of Biochemistry the most impressive yet.

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1.The Foundations of Biochemistry 1.1 Cellular Foundations 1.2 Chemical Foundations Box 11 Molecular Weight, Molecular Mass, and Their Correct Units Box 12 Louis Pasteur and Optical Activity: In Vino, Veritas1.3 Physical Foundations Box 13 Entropy: Things Fall Apart 1.4 Genetic Foundations

2.Water 2.1 Weak Interactions inAqueousSystems 2.2Ionization of Water, Weak Acids, and Weak Bases 2.3 Buffering agains pH Changes inBiological Systems Box 2-1 Medicine:On Being One's Own Rabbit (Don't Try This at Home!) 2.4 Water as a Reactant 2.5 The Fitness of Aqueous Environment for Living Organisms 3. Amino Acids, Peptides, and Proteins 3.1 Amino Acids Box 3-1 Methods:Absorption of Light by Molecules:The Lambert-Beer Law 3.2 Peptides and Proteins 3.3 Working with Proteins 3.4 The Structure of Proteins: Primary Structure Box 32 Consensus Sequences and Sequence Logos

4. The Three-Dimensional Structure of Proteins 4.1 Overview of Protein Structure 4.2 Protein Secondary Structure Box 41 Methods: Knowing the Right Hand from the Left 4.3 Protein Tertiary and Quaternary Structures Box 42 Permanent Waving Is Biochemical Engineering Box 43 Why Sailors, Explorers, and College Students Should Eat Their Fresh Fruits and Vegetables Box 44 The Protein Data Bank Box 45 Methods: Methods for Determining the Three-Dimensional Structure of a Protein 4.4 Protein Denaturation and Folding Box 46 Medicine: Death by Misfolding: The Prion Diseases

5. Protein Function 5.1 Reversible Binding of a Protein to a Ligand: Oxygen-Binding Proteins Box 51 Medicine: Carbon Monoxide: A Stealthy Killer 5.2 Complementary Interactions between Proteins and Ligands: The Immune System and Immunoglobulins 5.3 Protein Interactions Modulated by Chemical Energy: Actin, Myosin, and Molecular Motors

6. Enzymes 6.1 An Introduction to Enzymes 6.2 How Enzymes Work 6.3 Enzyme Kinetics as an Approach to Understanding Mechanism Box 61 Transformations of the Michaelis-Menten Equation: The Double-Reciprocal Plot Box 62 Kinetic Tests for Determining Inhibition Mechanisms Box 63 Curing African Sleeping Sickness with a Biochemical Trojan Horse 6.4 Examples of Enzymatic Reactions 6.5 Regulatory Enzymes

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Lehninger Principles of Biochemistry / Edition 6 by David ...

Top New York Biochemistry Schools : Programs, Colleges …

Biochemistry Schools in New York

New York contains 50 schools that offer biochemistry programs. Columbia University in the City of New York, the highest-ranking biochemistry school in NY, has a total student population of 24,230 and is the 4th highest ranked school in America.

Of the 50 biochemistry schools in New York, only 10 have a student population over 10k. After taking into account tuition, living expenses, and financial aid, New York University comes out as the most expensive ($34,011/yr), with CUNY College of Staten Island as the lowest recorded at only $6,884/yr.

Biochemistry students from New York schools who go on to become biochemists, bioengineers, biomedical engineers, biologists, etc. have a good chance at finding employment. For example, there are 22,860 people working as biochemists and biophysicists alone in the US, and their average annual salary is $88,550. Also, Microbiologists make on average $71,980 per year and there are about 16,260 of them employed in the US today. In fact, in the New York alone, there are 830 employed microbiologists earning an average yearly salary of $70,760. Biochemists and biophysicists in this state earn $87,400/yr and there are 1,460 employed.

Also, within the biochemistry schools in New York, the average student population is 2,856 and average student-to-faculty ratio is 16 to 1. Aside from biochemistry, there are 10195 total degree (or certificate) programs in the state, with 3,318 people on average applying for a school. Undergraduate tuition costs are normally around $4,933, but can vary widely depending on the type of school.

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New York Interesting Facts

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Top New York Biochemistry Schools : Programs, Colleges ...

American Society for Biochemistry and Molecular Biology

Grad students and postdocs: Tell us what resources you need and enter to win a $150 Amazon gift card. Take the survey. July 24: Membrane-Anchored Serine Proteases Symposium late breaking deadline. Kinases and Pseudokinases Symposium: Now accepting abstracts for oral programming consideration. JBC Thematic Minireview Series - Metals at the Host-Pathogen Interface

June 9, 2015This seventh Metals in Biology Thematic Series deals with the metal-based interactions of mammalian hosts with pathogens. Both pathogens and host have complex regulatory systems for metal homeostasis. Understanding these provides strategies for fighting pathogens, either by excluding essential metals from the microbes, by delivery of excess metals to cause toxicity, or by complexing metals in microorganisms. Intervention is possible by delivery of complexing reagents or by targeting the microbial regulatory apparatus.

Read all of the articles in this series here

May 15, 2015The study of cytoskeletal polymers has been an active area of research for more than 70 years. Yet, despite decades of pioneering work by some of the brightest scientists in biochemistry, cell biology and physiology, many central questions regarding the polymers themselves are only now starting to be answered. In this thematic series of mini-reviews, these topics are covered by some of the very same scientists who generated these recent insights, thereby providing us with an overview of the State of the Cytoskeleton in 2015.

Read all of the articles in this series here

The Howard Hughes Medical Institute (HHMI) announced 15 scientist-educators who have been named HHMI professors. Each will receive $1 million over five years "to create activities that integrate their research with student learning in ways that enhance students' understanding of science." Forty scientists have been named HHMI professors since the program began in 2002.

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American Society for Biochemistry and Molecular Biology

Oxidative Decarboxylation of Pyruvate, Biochemistry (B.Sc. & M.Sc. Biotechnology) GuruKpo – Video


Oxidative Decarboxylation of Pyruvate, Biochemistry (B.Sc. M.Sc. Biotechnology) GuruKpo
Ms. Rajshri Nagar, Biyani Girls college, Jaipur, explains about Oxidative Decarboxylation of Pyruvate. By this process, pyruvate is converted into Acetyl Co-A. It is a link between Glycolysis...

By: Guru Kpo

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Oxidative Decarboxylation of Pyruvate, Biochemistry (B.Sc. & M.Sc. Biotechnology) GuruKpo - Video

What is Glycolysis, Biochemistry (B.Sc. & M.Sc. Biotechnology) GuruKpo – Video


What is Glycolysis, Biochemistry (B.Sc. M.Sc. Biotechnology) GuruKpo
Ms. Rajshri Nagar, Biyani Girls college, Jaipur, explains about Glycolysis which play important role in respiration. It is the process of conversion of glucose into pyruvate to form energy....

By: Guru Kpo

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What is Glycolysis, Biochemistry (B.Sc. & M.Sc. Biotechnology) GuruKpo - Video

www.asell.org

Posted on Feb 08 2013 by Sam Priest, Natalie Williamson

Ion exchange chromatography is a critical analytical technique routinely used for the separation of compounds based on their charge for a wide range of purposes. This experiment provides students with experience executing the technique, and also builds knowledge of the theory behind how the process works by using ion exchange columns to identify products of hydrolysed copper complexes. In so doing students are also exposed to and gain an understanding of the relationships between the strength of reaction conditions and products produced as a consequence. /span>

Initially, students are asked to identify three complex salts from a mixture by charge and colour using an ion exchange column. Once they have developed a level of confidence in the process of identification, students then expose carbanato bisethylenediamine cobalt (III) chloride to varying conditions of hydrolysis; dilute hydrochloric acid, concentrated hydrochloric acid and hot concentrated hydrochloric acid; and are asked to identify the different species produced in each case. Hydrolysis removes the carbonato ligand from the complex, and students can expect to see the two coordination sites replaced by water or chloride ions to give diaquo, aquochloro and/or dichloro bisethylenediamine cobalt (III) chloride as products, the presence of each being dependant on the availability of chloride ions in comparison to water in each of the three reaction conditions. Students are expected to identify which species are present in each case based on characteristic colour and charge, and answer a series of questions concerning identification methods and reasons the products differ in each case.

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The Guardian is the latest old-line publisher to reach outside the business for a CEO – Digiday

Publishers are increasingly looking outside of their own immediate publishing spheres for new chief executive hires, in the hopes of bringing in fresh thinking from a related industry.

This week the Guardian announced that neuroscientist and former academic publisher Annette Thomas would be its new CEO. In September U.K. newspaper group Reach appointed as its new chiefJim Mullen, the former boss of gambling firm Ladbrokes Coral.And in AprilRoger Lynch joined Cond Nast from Pandora, the music streaming service provider. And at the start of last year, USA Todays owner Gannett had instructed its headhunting firm to search beyond the newspaper industry for CEO candidates.

The rationale behind for each publishers deliberations is unique, of course, but the changing (and challenging) nature of the publishing industry is a significant factor. Many of the skills required of a modern publishing executive building consumer revenue, managing the sophisticated use of data and driving workplace cultural change are not readily found among the tried-and-true candidates found within internal ranks or at competitors.

Thomas is a case in point. Many media observers seized on her scientific qualifications her Harvard undergraduate degree in biochemistry and biophysics (achieved with honors) and Yale doctorate in cell biology and neuroscience. But her background in academic publishing might be her most important credential.

In 2007, Thomas became chief executive of Macmillan Publishers, a leading science and education publishing group; she oversaw Macmillans merger with Springer Science and Business Media. And after she spent 23 years helming Macmillan, she became CEO of higher education data business Web of Science Group. Thomas has been lauded for her overall strong leadership skills, after leading both Macmillan and Web of Science through mergers and in the latter case, even a public listing. As one former colleague of Thomas said, shes terrific and [Guardian Media Group needs] a new leadership style.

The Guardians critical membership business will rely on Thomas experience with growing the number of subscriptions and managing churn, observers said.

Thomas will bring fresh thinking, but still, how do you persuade consumers to donate in order to drive meaningful subscription revenue? asked independent media analyst Alex DeGroote. The Guardian is at an inflection point. Its had years of fairly fierce cost cutting; breaking even is not the same is growing. What strategy will she bring to the table?

The appointment of Thomas represents a shift in the leadership at Guardian. She succeeds David Pemsel, who ascended to the CEO post in 2015 after working for the Guardian five years and also performing other media roles, including working at a broadcaster (ITV), a production shop (Shine) and an advertising agency (Ogilvy). Pemsel was responsible for steering the Guardian out of the red and into slim profitabilitythrough heavy cost cutting after two decades of financial losses.During Pemsels CEO tenure, the publisher diversified its revenue model so as to rely more on reader-derived revenue than advertising. Industry onlookers had pegged for the top job strong internal candidates like chief customer officer Anna Bateson,who leads the Guardians membership strategy.

An exclusive, inside look at whats actually happening in the video industry, including original reporting, analysis of important stories and interviews with interesting executives and other newsmakers.

Annette Thomas is a strong appointment because of her substantial experience in global publishing, in all things digital, and in M&A, deals and fundraising, said independent media consultant Colin Morrison. Those strengths point toward what I believe is the Guardians future in using partnerships, joint ventures and strategic alliances to become a truly global and 100% digital news media group.

While Jim Mullens CEO appointment at Reach raised some eyebrows, media observers say the former gambling firm boss has brought his knowledge of how to run a digitally sophisticated, consumer-facing marketing business with an understanding of how people behave. Indeed he is not a newcomer to publishing: From 2006 to 2010, Mullen worked at News UK as director of digital strategy.

And with Roger Lynchs arrival last year at Cond Nast after serving as CEO of Pandora as well as an executive for streaming service provider Sling TV, he brought something quite different than conventional magazine publishing experience: expertise in managing large complex organizations, as well as key growth areas like subscriptions and over-the-top video.

Nonetheless, even though Gannett instructed its headhunting firm to consider CEO candidates with digital or e-commerce backgrounds outside the newspaper industry as possible change agents for USA Today, in AugustGannett ended up appointing Paul Bascobert, a former president of media and technology company XO Group.

But in the Guardians case, the hiring of an executive who has worked outside the consumer publishing business represents a careful balancing act a move to grow the organization in new directions all without losing sight of its core values, according to Douglas McCabe, CEO at Enders Analysis. The CEO of the Guardian needs to be someone who is highly sensitive to the culture of the organization, which has a more complex agenda than most commercial news businesses, but without drowning in it, McCabe said. Annettes experience looks a perfect fit, balancing experience managing the complex culture of a comparable set of industry challenges with commercial nous, data analytics and expertise in planning for long-term, structural, industry change.

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The Guardian is the latest old-line publisher to reach outside the business for a CEO - Digiday